Protein–RNA interactions for Protein: Q9H9J4

USP42, Ubiquitin carboxyl-terminal hydrolase 42, humanhuman

Known RBP Predictions only

Length 1,324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP42Q9H9J4 ZNF92P1Y-201ENST00000415010 1191 ntBASIC2.78□□□□□ -1.96
USP42Q9H9J4 MORF4L1P6-201ENST00000418771 268 ntBASIC2.78□□□□□ -1.96
USP42Q9H9J4 AC073310.1-201ENST00000423226 1033 ntBASIC2.78□□□□□ -1.96
USP42Q9H9J4 C1orf195-201ENST00000424792 255 ntTSL 2 BASIC2.78□□□□□ -1.96
USP42Q9H9J4 AC233728.2-201ENST00000425348 757 ntBASIC2.78□□□□□ -1.96
USP42Q9H9J4 CR769767.1-201ENST00000436337 346 ntBASIC2.78□□□□□ -1.96
USP42Q9H9J4 LINC01359-202ENST00000436350 710 ntTSL 3 BASIC2.78□□□□□ -1.96
USP42Q9H9J4 AC007677.1-201ENST00000445757 515 ntBASIC2.78□□□□□ -1.96
USP42Q9H9J4 CNTN4-AS2-201ENST00000447256 426 ntTSL 3 BASIC2.78□□□□□ -1.96
USP42Q9H9J4 MTCO1P18-201ENST00000455518 1419 ntBASIC2.78□□□□□ -1.96
USP42Q9H9J4 MLLT10P2-201ENST00000506434 249 ntBASIC2.78□□□□□ -1.96
USP42Q9H9J4 AC126768.3-201ENST00000514519 560 ntTSL 4 BASIC2.78□□□□□ -1.96
USP42Q9H9J4 LINC01216-201ENST00000515728 824 ntTSL 5 BASIC2.78□□□□□ -1.96
USP42Q9H9J4 RNA5SP200-201ENST00000516360 103 ntBASIC2.78□□□□□ -1.96
USP42Q9H9J4 SCARNA16.3-201ENST00000516595 184 ntBASIC2.78□□□□□ -1.96
USP42Q9H9J4 SNRPGP16-201ENST00000533275 226 ntBASIC2.78□□□□□ -1.96
USP42Q9H9J4 AC087241.2-201ENST00000535801 324 ntBASIC2.78□□□□□ -1.96
USP42Q9H9J4 ZRANB2-AS2-212ENST00000590186 686 ntTSL 5 BASIC2.78□□□□□ -1.96
USP42Q9H9J4 AL355812.1-201ENST00000603215 216 ntBASIC2.78□□□□□ -1.96
USP42Q9H9J4 AL355802.4-201ENST00000607635 548 ntBASIC2.78□□□□□ -1.96
USP42Q9H9J4 AC112503.2-201ENST00000609005 552 ntBASIC2.78□□□□□ -1.96
USP42Q9H9J4 CDKN2B-AS_3.1-201ENST00000617587 144 ntBASIC2.78□□□□□ -1.96
USP42Q9H9J4 KCNIP4-IT1-201ENST00000627566 9848 ntBASIC2.78□□□□□ -1.96
USP42Q9H9J4 SATB1-AS1-266ENST00000630271 813 ntTSL 5 BASIC2.78□□□□□ -1.96
USP42Q9H9J4 CCDC68-201ENST00000337363 1457 ntAPPRIS P1 TSL 2 BASIC2.78□□□□□ -1.96
USP42Q9H9J4 WDFY3-AS2-202ENST00000451762 5814 ntTSL 3 BASIC2.78□□□□□ -1.96
USP42Q9H9J4 MGAT4C-211ENST00000621808 2582 ntAPPRIS P1 TSL 1 (best) BASIC2.78□□□□□ -1.96
USP42Q9H9J4 CEP70-211ENST00000484888 1993 ntAPPRIS P3 TSL 5 BASIC2.78□□□□□ -1.96
USP42Q9H9J4 SAMSN1-202ENST00000400564 1382 ntTSL 1 (best) BASIC2.77□□□□□ -1.97
USP42Q9H9J4 SNORA26.9-201ENST00000391322 122 ntBASIC2.77□□□□□ -1.97
USP42Q9H9J4 PAICSP7-201ENST00000419829 962 ntBASIC2.77□□□□□ -1.97
USP42Q9H9J4 AC079780.1-201ENST00000428259 207 ntBASIC2.77□□□□□ -1.97
USP42Q9H9J4 ZNF965P-201ENST00000432501 817 ntBASIC2.77□□□□□ -1.97
USP42Q9H9J4 MAP3K13-207ENST00000438798 388 ntTSL 2 BASIC2.77□□□□□ -1.97
USP42Q9H9J4 AL139230.1-201ENST00000440094 425 ntTSL 3 BASIC2.77□□□□□ -1.97
USP42Q9H9J4 AC064874.1-202ENST00000440101 287 ntTSL 3 BASIC2.77□□□□□ -1.97
USP42Q9H9J4 LINC02118-201ENST00000505899 407 ntTSL 3 BASIC2.77□□□□□ -1.97
USP42Q9H9J4 AC104986.1-201ENST00000517978 436 ntBASIC2.77□□□□□ -1.97
USP42Q9H9J4 SKP1-208ENST00000521216 899 ntAPPRIS ALT1 TSL 5 BASIC2.77□□□□□ -1.97
USP42Q9H9J4 AC138907.2-201ENST00000561479 866 ntTSL 3 BASIC2.77□□□□□ -1.97
USP42Q9H9J4 AC145350.4-201ENST00000562827 866 ntTSL 3 BASIC2.77□□□□□ -1.97
USP42Q9H9J4 AC133485.5-201ENST00000563407 866 ntTSL 3 BASIC2.77□□□□□ -1.97
USP42Q9H9J4 AC021549.1-201ENST00000580937 433 ntTSL 3 BASIC2.77□□□□□ -1.97
USP42Q9H9J4 AL355810.1-201ENST00000614629 552 ntBASIC2.77□□□□□ -1.97
USP42Q9H9J4 KLRF1-207ENST00000617793 1096 ntTSL 1 (best) BASIC2.77□□□□□ -1.97
USP42Q9H9J4 AC010378.1-201ENST00000619270 362 ntBASIC2.77□□□□□ -1.97
USP42Q9H9J4 AC091046.2-201ENST00000620775 665 ntBASIC2.77□□□□□ -1.97
USP42Q9H9J4 SMIM18-202ENST00000626298 114 ntTSL 5 BASIC2.77□□□□□ -1.97
USP42Q9H9J4 Clostridiales-1.2-201ENST00000636724 160 ntBASIC2.77□□□□□ -1.97
USP42Q9H9J4 MTND2P41-201ENST00000637599 773 ntBASIC2.77□□□□□ -1.97
USP42Q9H9J4 AC011460.1-201ENST00000636268 1834 ntBASIC2.77□□□□□ -1.97
USP42Q9H9J4 AC022336.2-201ENST00000568966 2538 ntBASIC2.77□□□□□ -1.97
USP42Q9H9J4 AGTR1-205ENST00000461609 1545 ntAPPRIS P1 TSL 3 BASIC2.77□□□□□ -1.97
USP42Q9H9J4 SEPT7-205ENST00000432293 1362 ntTSL 1 (best) BASIC2.77□□□□□ -1.97
USP42Q9H9J4 LCORL-202ENST00000382224 4984 ntAPPRIS ALT2 TSL 5 BASIC2.76□□□□□ -1.97
USP42Q9H9J4 STATH-201ENST00000246895 598 ntAPPRIS P1 TSL 1 (best) BASIC2.76□□□□□ -1.97
USP42Q9H9J4 AL161781.1-201ENST00000354277 403 ntBASIC2.76□□□□□ -1.97
USP42Q9H9J4 RNU6-1151P-201ENST00000384684 107 ntBASIC2.76□□□□□ -1.97
USP42Q9H9J4 RNU2-2P-201ENST00000410396 191 ntBASIC2.76□□□□□ -1.97
USP42Q9H9J4 RNA5SP247-201ENST00000411181 105 ntBASIC2.76□□□□□ -1.97
USP42Q9H9J4 HMGB1P11-201ENST00000413899 637 ntBASIC2.76□□□□□ -1.97
USP42Q9H9J4 AL035410.1-201ENST00000427409 427 ntBASIC2.76□□□□□ -1.97
USP42Q9H9J4 AC104332.2-201ENST00000429959 156 ntBASIC2.76□□□□□ -1.97
USP42Q9H9J4 AC093579.1-201ENST00000439455 352 ntTSL 2 BASIC2.76□□□□□ -1.97
USP42Q9H9J4 RPS26P30-201ENST00000443431 335 ntBASIC2.76□□□□□ -1.97
USP42Q9H9J4 LINC01309-201ENST00000444795 492 ntTSL 3 BASIC2.76□□□□□ -1.97
USP42Q9H9J4 AL031183.1-201ENST00000457667 207 ntBASIC2.76□□□□□ -1.97
USP42Q9H9J4 AC072039.1-201ENST00000477611 581 ntBASIC2.76□□□□□ -1.97
USP42Q9H9J4 RPS27P23-201ENST00000487608 251 ntBASIC2.76□□□□□ -1.97
USP42Q9H9J4 AC117522.2-201ENST00000510049 657 ntBASIC2.76□□□□□ -1.97
USP42Q9H9J4 AC012625.1-201ENST00000515153 625 ntTSL 5 BASIC2.76□□□□□ -1.97
USP42Q9H9J4 AC109466.1-214ENST00000522762 583 ntTSL 2 BASIC2.76□□□□□ -1.97
USP42Q9H9J4 OSBPL9P3-201ENST00000534523 595 ntBASIC2.76□□□□□ -1.97
USP42Q9H9J4 AC012379.1-201ENST00000558304 406 ntTSL 3 BASIC2.76□□□□□ -1.97
USP42Q9H9J4 AC025918.2-201ENST00000558683 763 ntBASIC2.76□□□□□ -1.97
USP42Q9H9J4 AC010320.2-202ENST00000599125 595 ntTSL 4 BASIC2.76□□□□□ -1.97
USP42Q9H9J4 AC245517.5-201ENST00000611529 162 ntBASIC2.76□□□□□ -1.97
USP42Q9H9J4 U2.15-201ENST00000611544 191 ntBASIC2.76□□□□□ -1.97
USP42Q9H9J4 U2.16-201ENST00000613119 191 ntBASIC2.76□□□□□ -1.97
USP42Q9H9J4 MIR6845-201ENST00000613182 61 ntBASIC2.76□□□□□ -1.97
USP42Q9H9J4 U2.12-201ENST00000613778 191 ntBASIC2.76□□□□□ -1.97
USP42Q9H9J4 U2.20-201ENST00000613956 192 ntBASIC2.76□□□□□ -1.97
USP42Q9H9J4 U2.9-201ENST00000615427 191 ntBASIC2.76□□□□□ -1.97
USP42Q9H9J4 U2.11-201ENST00000616345 191 ntBASIC2.76□□□□□ -1.97
USP42Q9H9J4 U2.2-201ENST00000616535 191 ntBASIC2.76□□□□□ -1.97
USP42Q9H9J4 U2.3-201ENST00000617785 191 ntBASIC2.76□□□□□ -1.97
USP42Q9H9J4 U2.19-201ENST00000618602 191 ntBASIC2.76□□□□□ -1.97
USP42Q9H9J4 RNU2-1-201ENST00000618664 191 ntBASIC2.76□□□□□ -1.97
USP42Q9H9J4 U2.6-201ENST00000619225 191 ntBASIC2.76□□□□□ -1.97
USP42Q9H9J4 U2.5-201ENST00000619465 191 ntBASIC2.76□□□□□ -1.97
USP42Q9H9J4 U2.10-201ENST00000620268 191 ntBASIC2.76□□□□□ -1.97
USP42Q9H9J4 AC009831.4-201ENST00000620744 325 ntBASIC2.76□□□□□ -1.97
USP42Q9H9J4 AC097372.4-201ENST00000625025 466 ntBASIC2.76□□□□□ -1.97
USP42Q9H9J4 AC093591.3-201ENST00000634516 308 ntBASIC2.76□□□□□ -1.97
USP42Q9H9J4 AC103988.1-201ENST00000566382 2177 ntBASIC2.76□□□□□ -1.97
USP42Q9H9J4 SNORA14A-201ENST00000364773 135 ntBASIC2.75□□□□□ -1.97
USP42Q9H9J4 RNA5SP38-201ENST00000410750 119 ntBASIC2.75□□□□□ -1.97
USP42Q9H9J4 HMGB3P31-201ENST00000413333 595 ntBASIC2.75□□□□□ -1.97
USP42Q9H9J4 TATDN1P1-201ENST00000414123 891 ntBASIC2.75□□□□□ -1.97
USP42Q9H9J4 AL078590.2-202ENST00000422736 568 ntTSL 3 BASIC2.75□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 105.7 ms