Protein–RNA interactions for Protein: Q9GZZ0

HOXD1, Homeobox protein Hox-D1, humanhuman

Predictions only

Length 328 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD1Q9GZZ0 PTMAP2-201ENST00000397627 327 ntBASIC3.18□□□□□ -1.9
HOXD1Q9GZZ0 ZNF705D-201ENST00000400078 925 ntAPPRIS P1 TSL 2 BASIC3.18□□□□□ -1.9
HOXD1Q9GZZ0 RN7SKP266-201ENST00000410232 287 ntBASIC3.18□□□□□ -1.9
HOXD1Q9GZZ0 RN7SKP123-201ENST00000410732 291 ntBASIC3.18□□□□□ -1.9
HOXD1Q9GZZ0 MTCO1P17-201ENST00000411522 491 ntBASIC3.18□□□□□ -1.9
HOXD1Q9GZZ0 AC091705.1-201ENST00000412197 209 ntTSL 5 BASIC3.18□□□□□ -1.9
HOXD1Q9GZZ0 AC016907.1-201ENST00000419483 435 ntBASIC3.18□□□□□ -1.9
HOXD1Q9GZZ0 ATP2B2-IT2-201ENST00000419591 507 ntTSL 2 BASIC3.18□□□□□ -1.9
HOXD1Q9GZZ0 BBS9-205ENST00000425508 1252 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
HOXD1Q9GZZ0 AC244035.1-201ENST00000430042 390 ntBASIC3.18□□□□□ -1.9
HOXD1Q9GZZ0 AL353705.1-201ENST00000433468 480 ntBASIC3.18□□□□□ -1.9
HOXD1Q9GZZ0 AC073063.1-201ENST00000434352 607 ntBASIC3.18□□□□□ -1.9
HOXD1Q9GZZ0 AL117341.1-201ENST00000437213 373 ntTSL 5 BASIC3.18□□□□□ -1.9
HOXD1Q9GZZ0 AL590399.3-201ENST00000438072 543 ntTSL 5 BASIC3.18□□□□□ -1.9
HOXD1Q9GZZ0 AL591721.1-201ENST00000439849 751 ntTSL 3 BASIC3.18□□□□□ -1.9
HOXD1Q9GZZ0 AL121957.1-201ENST00000441532 338 ntTSL 2 BASIC3.18□□□□□ -1.9
HOXD1Q9GZZ0 RPL21P23-201ENST00000446654 460 ntBASIC3.18□□□□□ -1.9
HOXD1Q9GZZ0 AP000936.2-201ENST00000447151 681 ntBASIC3.18□□□□□ -1.9
HOXD1Q9GZZ0 AC239367.2-201ENST00000447309 705 ntBASIC3.18□□□□□ -1.9
HOXD1Q9GZZ0 AC008264.1-201ENST00000447612 367 ntBASIC3.18□□□□□ -1.9
HOXD1Q9GZZ0 AL442647.1-201ENST00000449485 481 ntTSL 5 BASIC3.18□□□□□ -1.9
HOXD1Q9GZZ0 RBMY2UP-201ENST00000453474 324 ntBASIC3.18□□□□□ -1.9
HOXD1Q9GZZ0 AC104563.1-201ENST00000476147 376 ntBASIC3.18□□□□□ -1.9
HOXD1Q9GZZ0 LNX1-AS2-201ENST00000502410 347 ntTSL 5 BASIC3.18□□□□□ -1.9
HOXD1Q9GZZ0 AC092608.1-201ENST00000503505 267 ntTSL 2 BASIC3.18□□□□□ -1.9
HOXD1Q9GZZ0 LINC01861-201ENST00000509568 537 ntTSL 4 BASIC3.18□□□□□ -1.9
HOXD1Q9GZZ0 MTCO3P28-201ENST00000513351 515 ntBASIC3.18□□□□□ -1.9
HOXD1Q9GZZ0 RN7SKP13-201ENST00000515933 244 ntBASIC3.18□□□□□ -1.9
HOXD1Q9GZZ0 AC107934.2-201ENST00000518653 310 ntBASIC3.18□□□□□ -1.9
HOXD1Q9GZZ0 AC245166.1-201ENST00000521012 253 ntBASIC3.18□□□□□ -1.9
HOXD1Q9GZZ0 AC009597.1-201ENST00000521215 584 ntTSL 4 BASIC3.18□□□□□ -1.9
HOXD1Q9GZZ0 AP002373.1-201ENST00000544347 729 ntAPPRIS P1 TSL 3 BASIC3.18□□□□□ -1.9
HOXD1Q9GZZ0 AC126177.3-201ENST00000551839 688 ntBASIC3.18□□□□□ -1.9
HOXD1Q9GZZ0 AC118755.1-201ENST00000572923 195 ntTSL 3 BASIC3.18□□□□□ -1.9
HOXD1Q9GZZ0 AC090615.1-201ENST00000577519 154 ntBASIC3.18□□□□□ -1.9
HOXD1Q9GZZ0 AP001021.1-201ENST00000577704 244 ntTSL 3 BASIC3.18□□□□□ -1.9
HOXD1Q9GZZ0 AC012669.1-201ENST00000603209 283 ntBASIC3.18□□□□□ -1.9
HOXD1Q9GZZ0 AP001981.2-201ENST00000603241 418 ntBASIC3.18□□□□□ -1.9
HOXD1Q9GZZ0 AC135507.1-201ENST00000607214 561 ntBASIC3.18□□□□□ -1.9
HOXD1Q9GZZ0 MIR6798-201ENST00000612887 67 ntBASIC3.18□□□□□ -1.9
HOXD1Q9GZZ0 AC243312.2-201ENST00000623340 601 ntBASIC3.18□□□□□ -1.9
HOXD1Q9GZZ0 AC004777.1-201ENST00000624317 287 ntBASIC3.18□□□□□ -1.9
HOXD1Q9GZZ0 hsa-mir-4776-1.1-201ENST00000636364 80 ntBASIC3.18□□□□□ -1.9
HOXD1Q9GZZ0 OSBPL9P4-201ENST00000371707 1800 ntBASIC3.18□□□□□ -1.9
HOXD1Q9GZZ0 FAM35CP-201ENST00000554755 2470 ntBASIC3.18□□□□□ -1.9
HOXD1Q9GZZ0 AC093908.1-201ENST00000623125 8092 ntBASIC3.18□□□□□ -1.9
HOXD1Q9GZZ0 MIPOL1-206ENST00000545536 2073 ntTSL 5 BASIC3.18□□□□□ -1.9
HOXD1Q9GZZ0 RAD21-210ENST00000523986 2506 ntTSL 2 BASIC3.18□□□□□ -1.9
HOXD1Q9GZZ0 MTND5P7-201ENST00000413558 1798 ntBASIC3.17□□□□□ -1.9
HOXD1Q9GZZ0 SCFD1-207ENST00000544052 2058 ntTSL 2 BASIC3.17□□□□□ -1.9
HOXD1Q9GZZ0 LRRTM2-201ENST00000274711 6017 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
HOXD1Q9GZZ0 RNA5SP124-201ENST00000362739 110 ntBASIC3.17□□□□□ -1.9
HOXD1Q9GZZ0 U3.4-201ENST00000363352 213 ntBASIC3.17□□□□□ -1.9
HOXD1Q9GZZ0 Y_RNA.126-201ENST00000363382 111 ntBASIC3.17□□□□□ -1.9
HOXD1Q9GZZ0 RNU6-853P-201ENST00000364306 107 ntBASIC3.17□□□□□ -1.9
HOXD1Q9GZZ0 C1orf105-203ENST00000367727 985 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
HOXD1Q9GZZ0 RNU6-629P-201ENST00000384061 103 ntBASIC3.17□□□□□ -1.9
HOXD1Q9GZZ0 RNU6-1207P-201ENST00000384343 107 ntBASIC3.17□□□□□ -1.9
HOXD1Q9GZZ0 RNU6-769P-201ENST00000384407 104 ntBASIC3.17□□□□□ -1.9
HOXD1Q9GZZ0 AL356421.1-201ENST00000403255 413 ntBASIC3.17□□□□□ -1.9
HOXD1Q9GZZ0 LIMS1-AS1-201ENST00000411710 477 ntTSL 3 BASIC3.17□□□□□ -1.9
HOXD1Q9GZZ0 DBIP2-201ENST00000419076 262 ntBASIC3.17□□□□□ -1.9
HOXD1Q9GZZ0 BX842559.1-201ENST00000419615 532 ntBASIC3.17□□□□□ -1.9
HOXD1Q9GZZ0 SEPT2P1-201ENST00000419651 180 ntBASIC3.17□□□□□ -1.9
HOXD1Q9GZZ0 AC244098.2-201ENST00000422068 99 ntBASIC3.17□□□□□ -1.9
HOXD1Q9GZZ0 TEX41-204ENST00000423031 491 ntTSL 4 BASIC3.17□□□□□ -1.9
HOXD1Q9GZZ0 AL590378.1-201ENST00000426818 303 ntTSL 3 BASIC3.17□□□□□ -1.9
HOXD1Q9GZZ0 AL596220.1-202ENST00000429768 314 ntTSL 3 BASIC3.17□□□□□ -1.9
HOXD1Q9GZZ0 AC007285.2-201ENST00000433088 518 ntTSL 3 BASIC3.17□□□□□ -1.9
HOXD1Q9GZZ0 AC098826.1-201ENST00000433943 471 ntBASIC3.17□□□□□ -1.9
HOXD1Q9GZZ0 MTCO2P16-201ENST00000436962 677 ntBASIC3.17□□□□□ -1.9
HOXD1Q9GZZ0 AC091862.1-201ENST00000438016 1100 ntBASIC3.17□□□□□ -1.9
HOXD1Q9GZZ0 KATNBL1P3-201ENST00000443475 909 ntBASIC3.17□□□□□ -1.9
HOXD1Q9GZZ0 DARS-AS1-205ENST00000444649 558 ntTSL 3 BASIC3.17□□□□□ -1.9
HOXD1Q9GZZ0 GDI2P2-201ENST00000445131 608 ntBASIC3.17□□□□□ -1.9
HOXD1Q9GZZ0 COX6CP12-201ENST00000446748 202 ntBASIC3.17□□□□□ -1.9
HOXD1Q9GZZ0 AC009961.3-201ENST00000449832 765 ntBASIC3.17□□□□□ -1.9
HOXD1Q9GZZ0 AC112229.2-201ENST00000456683 476 ntTSL 5 BASIC3.17□□□□□ -1.9
HOXD1Q9GZZ0 RPL31P3-201ENST00000458430 332 ntBASIC3.17□□□□□ -1.9
HOXD1Q9GZZ0 snoU13.8-201ENST00000458890 104 ntBASIC3.17□□□□□ -1.9
HOXD1Q9GZZ0 RN7SL542P-201ENST00000467147 294 ntBASIC3.17□□□□□ -1.9
HOXD1Q9GZZ0 AP001025.2-201ENST00000490908 477 ntBASIC3.17□□□□□ -1.9
HOXD1Q9GZZ0 AL139147.1-201ENST00000502413 1156 ntTSL 2 BASIC3.17□□□□□ -1.9
HOXD1Q9GZZ0 LINC02469-201ENST00000506460 741 ntTSL 3 BASIC3.17□□□□□ -1.9
HOXD1Q9GZZ0 FCF1P8-201ENST00000510322 597 ntBASIC3.17□□□□□ -1.9
HOXD1Q9GZZ0 AF131216.2-201ENST00000512316 564 ntBASIC3.17□□□□□ -1.9
HOXD1Q9GZZ0 AC116347.2-201ENST00000514912 523 ntBASIC3.17□□□□□ -1.9
HOXD1Q9GZZ0 RNU6-714P-201ENST00000516963 103 ntBASIC3.17□□□□□ -1.9
HOXD1Q9GZZ0 AC023632.4-201ENST00000517783 191 ntBASIC3.17□□□□□ -1.9
HOXD1Q9GZZ0 AC026403.1-201ENST00000518938 295 ntBASIC3.17□□□□□ -1.9
HOXD1Q9GZZ0 AC107909.2-201ENST00000520844 493 ntTSL 3 BASIC3.17□□□□□ -1.9
HOXD1Q9GZZ0 IGKV2D-19-201ENST00000523346 262 ntBASIC3.17□□□□□ -1.9
HOXD1Q9GZZ0 AP002833.1-201ENST00000530572 566 ntTSL 3 BASIC3.17□□□□□ -1.9
HOXD1Q9GZZ0 AC239802.1-201ENST00000531288 406 ntTSL 5 BASIC3.17□□□□□ -1.9
HOXD1Q9GZZ0 AC026894.1-202ENST00000533843 477 ntTSL 5 BASIC3.17□□□□□ -1.9
HOXD1Q9GZZ0 AC068587.4-201ENST00000533893 186 ntBASIC3.17□□□□□ -1.9
HOXD1Q9GZZ0 LINC02235-201ENST00000534675 466 ntTSL 5 BASIC3.17□□□□□ -1.9
HOXD1Q9GZZ0 AP002993.1-201ENST00000538624 210 ntTSL 5 BASIC3.17□□□□□ -1.9
HOXD1Q9GZZ0 AL163153.1-201ENST00000554223 283 ntBASIC3.17□□□□□ -1.9
HOXD1Q9GZZ0 MIR4307-201ENST00000582802 84 ntBASIC3.17□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 100.6 ms