Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 AC007342.9-201ENST00000623877 1385 ntBASIC2.34□□□□□ -2.04
CCDC42Q96M95 SCFD1-207ENST00000544052 2058 ntTSL 2 BASIC2.33□□□□□ -2.04
CCDC42Q96M95 AC130650.2-201ENST00000618736 2403 ntBASIC2.33□□□□□ -2.04
CCDC42Q96M95 AGTR1-205ENST00000461609 1545 ntAPPRIS P1 TSL 3 BASIC2.33□□□□□ -2.04
CCDC42Q96M95 SLC39A10-201ENST00000359634 5322 ntAPPRIS P1 TSL 1 (best) BASIC2.33□□□□□ -2.04
CCDC42Q96M95 SNORA5B-201ENST00000363786 132 ntBASIC2.33□□□□□ -2.04
CCDC42Q96M95 RNU6-173P-201ENST00000364215 104 ntBASIC2.33□□□□□ -2.04
CCDC42Q96M95 U3.29-201ENST00000391296 212 ntBASIC2.33□□□□□ -2.04
CCDC42Q96M95 ATF1P1-201ENST00000406040 927 ntBASIC2.33□□□□□ -2.04
CCDC42Q96M95 RNU6-193P-201ENST00000410977 107 ntBASIC2.33□□□□□ -2.04
CCDC42Q96M95 HMGB3P31-201ENST00000413333 595 ntBASIC2.33□□□□□ -2.04
CCDC42Q96M95 AL365496.1-201ENST00000426885 215 ntBASIC2.33□□□□□ -2.04
CCDC42Q96M95 AC004866.2-201ENST00000438285 481 ntBASIC2.33□□□□□ -2.04
CCDC42Q96M95 SDR42E1P3-201ENST00000438345 502 ntBASIC2.33□□□□□ -2.04
CCDC42Q96M95 IPO7P1-201ENST00000442031 636 ntBASIC2.33□□□□□ -2.04
CCDC42Q96M95 AL591848.2-201ENST00000442712 522 ntTSL 3 BASIC2.33□□□□□ -2.04
CCDC42Q96M95 DPPA3P1-201ENST00000448050 469 ntBASIC2.33□□□□□ -2.04
CCDC42Q96M95 DNAJC19P8-201ENST00000452887 259 ntBASIC2.33□□□□□ -2.04
CCDC42Q96M95 AC092798.1-201ENST00000458542 409 ntBASIC2.33□□□□□ -2.04
CCDC42Q96M95 AL162742.2-201ENST00000472915 244 ntTSL 5 BASIC2.33□□□□□ -2.04
CCDC42Q96M95 RNA5SP281-201ENST00000516504 135 ntBASIC2.33□□□□□ -2.04
CCDC42Q96M95 RNU1-40P-201ENST00000516816 164 ntBASIC2.33□□□□□ -2.04
CCDC42Q96M95 RNU1-97P-201ENST00000516872 164 ntBASIC2.33□□□□□ -2.04
CCDC42Q96M95 ZFPM2-AS1-204ENST00000520433 748 ntTSL 3 BASIC2.33□□□□□ -2.04
CCDC42Q96M95 AP005357.1-201ENST00000520749 476 ntTSL 3 BASIC2.33□□□□□ -2.04
CCDC42Q96M95 LINC02378-201ENST00000540399 1003 ntTSL 5 BASIC2.33□□□□□ -2.04
CCDC42Q96M95 AL133166.1-201ENST00000551040 1034 ntTSL 4 BASIC2.33□□□□□ -2.04
CCDC42Q96M95 AC004217.3-201ENST00000551552 878 ntBASIC2.33□□□□□ -2.04
CCDC42Q96M95 AC010546.1-201ENST00000569391 485 ntBASIC2.33□□□□□ -2.04
CCDC42Q96M95 MIR5002-201ENST00000584713 97 ntBASIC2.33□□□□□ -2.04
CCDC42Q96M95 AC055876.5-201ENST00000605667 259 ntBASIC2.33□□□□□ -2.04
CCDC42Q96M95 AC021851.1-201ENST00000608537 1082 ntBASIC2.33□□□□□ -2.04
CCDC42Q96M95 LINC01090-203ENST00000632331 466 ntTSL 5 BASIC2.33□□□□□ -2.04
CCDC42Q96M95 TECRL-202ENST00000507440 2876 ntTSL 5 BASIC2.33□□□□□ -2.04
CCDC42Q96M95 SEC63P2-201ENST00000503863 1939 ntBASIC2.32□□□□□ -2.04
CCDC42Q96M95 MS4A14-202ENST00000395001 3401 ntTSL 5 BASIC2.32□□□□□ -2.04
CCDC42Q96M95 APCS-201ENST00000255040 926 ntAPPRIS P1 TSL 1 (best) BASIC2.32□□□□□ -2.04
CCDC42Q96M95 SNORA27.3-201ENST00000364937 134 ntBASIC2.32□□□□□ -2.04
CCDC42Q96M95 SNAPC3-201ENST00000380799 753 ntTSL 3 BASIC2.32□□□□□ -2.04
CCDC42Q96M95 TRAJ59-201ENST00000390480 54 ntAPPRIS P1 BASIC2.32□□□□□ -2.04
CCDC42Q96M95 AC234781.2-201ENST00000426370 994 ntBASIC2.32□□□□□ -2.04
CCDC42Q96M95 RPP40P1-201ENST00000426762 456 ntBASIC2.32□□□□□ -2.04
CCDC42Q96M95 AL591719.1-201ENST00000444669 744 ntBASIC2.32□□□□□ -2.04
CCDC42Q96M95 AP000477.2-201ENST00000447405 778 ntTSL 3 BASIC2.32□□□□□ -2.04
CCDC42Q96M95 AL121970.1-201ENST00000447557 929 ntTSL 1 (best) BASIC2.32□□□□□ -2.04
CCDC42Q96M95 AC002383.1-201ENST00000448260 671 ntTSL 5 BASIC2.32□□□□□ -2.04
CCDC42Q96M95 AC025033.1-201ENST00000463883 194 ntBASIC2.32□□□□□ -2.04
CCDC42Q96M95 AC004924.1-201ENST00000480160 781 ntBASIC2.32□□□□□ -2.04
CCDC42Q96M95 RPS15AP34-201ENST00000487776 387 ntBASIC2.32□□□□□ -2.04
CCDC42Q96M95 RPS27P26-201ENST00000494583 239 ntBASIC2.32□□□□□ -2.04
CCDC42Q96M95 AC008696.2-201ENST00000503323 825 ntTSL 3 BASIC2.32□□□□□ -2.04
CCDC42Q96M95 AC097467.3-212ENST00000512269 568 ntTSL 3 BASIC2.32□□□□□ -2.04
CCDC42Q96M95 AC109329.2-201ENST00000519658 482 ntBASIC2.32□□□□□ -2.04
CCDC42Q96M95 SRP54-AS1-203ENST00000556355 603 ntTSL 5 BASIC2.32□□□□□ -2.04
CCDC42Q96M95 UBE2Q2P2-203ENST00000613592 761 ntBASIC2.32□□□□□ -2.04
CCDC42Q96M95 CU459211.1-201ENST00000635667 749 ntBASIC2.32□□□□□ -2.04
CCDC42Q96M95 Clostridiales-1.3-201ENST00000637703 147 ntBASIC2.32□□□□□ -2.04
CCDC42Q96M95 CEP57L1-203ENST00000368970 1680 ntAPPRIS ALT2 TSL 5 BASIC2.31□□□□□ -2.04
CCDC42Q96M95 FTLP6-201ENST00000355274 422 ntBASIC2.31□□□□□ -2.04
CCDC42Q96M95 RNU6-198P-201ENST00000384258 104 ntBASIC2.31□□□□□ -2.04
CCDC42Q96M95 RNU6-301P-201ENST00000384277 107 ntBASIC2.31□□□□□ -2.04
CCDC42Q96M95 SNORA36C-201ENST00000384289 132 ntBASIC2.31□□□□□ -2.04
CCDC42Q96M95 RPS4XP8-201ENST00000402039 771 ntBASIC2.31□□□□□ -2.04
CCDC42Q96M95 AL513475.1-201ENST00000406602 315 ntBASIC2.31□□□□□ -2.04
CCDC42Q96M95 ACTR3BP6-201ENST00000422332 1241 ntBASIC2.31□□□□□ -2.04
CCDC42Q96M95 LINC01318-201ENST00000423593 597 ntTSL 4 BASIC2.31□□□□□ -2.04
CCDC42Q96M95 AC006946.1-201ENST00000429106 328 ntBASIC2.31□□□□□ -2.04
CCDC42Q96M95 AC069540.2-201ENST00000441776 351 ntTSL 3 BASIC2.31□□□□□ -2.04
CCDC42Q96M95 AL021397.1-201ENST00000451806 248 ntBASIC2.31□□□□□ -2.04
CCDC42Q96M95 RNU6-717P-201ENST00000459076 104 ntBASIC2.31□□□□□ -2.04
CCDC42Q96M95 AC108734.3-201ENST00000481241 1165 ntBASIC2.31□□□□□ -2.04
CCDC42Q96M95 AC113155.1-201ENST00000511141 769 ntBASIC2.31□□□□□ -2.04
CCDC42Q96M95 AC109927.1-202ENST00000511951 282 ntTSL 3 BASIC2.31□□□□□ -2.04
CCDC42Q96M95 RNU6-760P-201ENST00000516078 97 ntBASIC2.31□□□□□ -2.04
CCDC42Q96M95 AC074051.3-201ENST00000570238 358 ntBASIC2.31□□□□□ -2.04
CCDC42Q96M95 AC011260.1-201ENST00000578420 472 ntBASIC2.31□□□□□ -2.04
CCDC42Q96M95 SNORD53-201ENST00000579969 78 ntBASIC2.31□□□□□ -2.04
CCDC42Q96M95 OR1M4P-201ENST00000589199 287 ntBASIC2.31□□□□□ -2.04
CCDC42Q96M95 AL590227.1-201ENST00000622616 315 ntTSL 5 BASIC2.31□□□□□ -2.04
CCDC42Q96M95 AP006248.3-201ENST00000623580 594 ntBASIC2.31□□□□□ -2.04
CCDC42Q96M95 EBAG9-210ENST00000620557 2186 ntAPPRIS P1 TSL 3 BASIC2.31□□□□□ -2.04
CCDC42Q96M95 ZBED5-201ENST00000413761 2512 ntAPPRIS P1 TSL 1 (best) BASIC2.31□□□□□ -2.04
CCDC42Q96M95 ERBIN-202ENST00000380935 6692 ntTSL 5 BASIC2.31□□□□□ -2.04
CCDC42Q96M95 C1D-201ENST00000355848 2233 ntAPPRIS P1 TSL 1 (best) BASIC2.3□□□□□ -2.04
CCDC42Q96M95 OR5W2-201ENST00000344514 933 ntAPPRIS P1 BASIC2.3□□□□□ -2.04
CCDC42Q96M95 RNU4-52P-201ENST00000384209 138 ntBASIC2.3□□□□□ -2.04
CCDC42Q96M95 DEFB130A-201ENST00000400079 240 ntAPPRIS P1 TSL 1 (best) BASIC2.3□□□□□ -2.04
CCDC42Q96M95 TAF9BP2-201ENST00000400856 499 ntBASIC2.3□□□□□ -2.04
CCDC42Q96M95 AL513331.1-201ENST00000411908 397 ntBASIC2.3□□□□□ -2.04
CCDC42Q96M95 LINC01201-201ENST00000412420 294 ntTSL 3 BASIC2.3□□□□□ -2.04
CCDC42Q96M95 HNRNPDLP1-201ENST00000412834 550 ntBASIC2.3□□□□□ -2.04
CCDC42Q96M95 CFLAR-AS1-201ENST00000415011 1072 ntTSL 1 (best) BASIC2.3□□□□□ -2.04
CCDC42Q96M95 RPL27AP8-201ENST00000424277 446 ntBASIC2.3□□□□□ -2.04
CCDC42Q96M95 AP001599.1-201ENST00000426771 361 ntTSL 3 BASIC2.3□□□□□ -2.04
CCDC42Q96M95 AC009414.1-201ENST00000427200 443 ntBASIC2.3□□□□□ -2.04
CCDC42Q96M95 DEFB130B-201ENST00000437818 240 ntAPPRIS P1 TSL 1 (best) BASIC2.3□□□□□ -2.04
CCDC42Q96M95 AL831737.1-201ENST00000441288 271 ntBASIC2.3□□□□□ -2.04
CCDC42Q96M95 AL589880.1-201ENST00000448271 287 ntBASIC2.3□□□□□ -2.04
CCDC42Q96M95 AL118520.1-201ENST00000450770 291 ntBASIC2.3□□□□□ -2.04
CCDC42Q96M95 PNPLA4P1-201ENST00000458328 305 ntBASIC2.3□□□□□ -2.04
Retrieved 100 of 98,524 protein–RNA pairs in 101.3 ms