Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 AC147055.4-201ENST00000504399 745 ntBASIC3.1□□□□□ -1.91
VPS39Q96JC1 CCNG1-203ENST00000504553 732 ntTSL 3 BASIC3.1□□□□□ -1.91
VPS39Q96JC1 LINC02198-202ENST00000505371 526 ntTSL 5 BASIC3.1□□□□□ -1.91
VPS39Q96JC1 LINC01846-201ENST00000505908 651 ntTSL 5 BASIC3.1□□□□□ -1.91
VPS39Q96JC1 POU5F1P7-201ENST00000508759 541 ntBASIC3.1□□□□□ -1.91
VPS39Q96JC1 AC113385.1-201ENST00000511468 563 ntTSL 4 BASIC3.1□□□□□ -1.91
VPS39Q96JC1 AC087311.2-201ENST00000549660 320 ntTSL 4 BASIC3.1□□□□□ -1.91
VPS39Q96JC1 AC091534.1-202ENST00000549953 468 ntTSL 5 BASIC3.1□□□□□ -1.91
VPS39Q96JC1 AL132857.1-201ENST00000555180 708 ntBASIC3.1□□□□□ -1.91
VPS39Q96JC1 AC090695.1-201ENST00000561269 1222 ntBASIC3.1□□□□□ -1.91
VPS39Q96JC1 AL132657.2-201ENST00000564417 358 ntBASIC3.1□□□□□ -1.91
VPS39Q96JC1 AC079411.1-201ENST00000565441 795 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
VPS39Q96JC1 MTND1P8-201ENST00000571424 950 ntBASIC3.1□□□□□ -1.91
VPS39Q96JC1 CCDC58P3-201ENST00000590792 430 ntBASIC3.1□□□□□ -1.91
VPS39Q96JC1 PRELID3BP8-201ENST00000604148 295 ntBASIC3.1□□□□□ -1.91
VPS39Q96JC1 ELOCP35-201ENST00000604289 336 ntBASIC3.1□□□□□ -1.91
VPS39Q96JC1 AC019159.1-201ENST00000605094 187 ntBASIC3.1□□□□□ -1.91
VPS39Q96JC1 AC069545.1-201ENST00000605671 358 ntBASIC3.1□□□□□ -1.91
VPS39Q96JC1 AC084757.4-201ENST00000616350 526 ntBASIC3.1□□□□□ -1.91
VPS39Q96JC1 AC138932.5-201ENST00000617759 563 ntBASIC3.1□□□□□ -1.91
VPS39Q96JC1 AL596245.1-201ENST00000618994 362 ntBASIC3.1□□□□□ -1.91
VPS39Q96JC1 AC006386.1-201ENST00000619436 415 ntBASIC3.1□□□□□ -1.91
VPS39Q96JC1 AC012314.7-201ENST00000619693 93 ntBASIC3.1□□□□□ -1.91
VPS39Q96JC1 PPP2R2A-224ENST00000640787 318 ntTSL 5 BASIC3.1□□□□□ -1.91
VPS39Q96JC1 MGAT4C-211ENST00000621808 2582 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
VPS39Q96JC1 DCLRE1A-202ENST00000369305 4241 ntAPPRIS P1 TSL 5 BASIC3.1□□□□□ -1.91
VPS39Q96JC1 KIAA1841-211ENST00000612149 4202 ntTSL 5 BASIC3.1□□□□□ -1.91
VPS39Q96JC1 AGTR1-204ENST00000418473 2071 ntTSL 5 BASIC3.1□□□□□ -1.91
VPS39Q96JC1 PCDH11Y-201ENST00000215473 4595 ntAPPRIS ALT2 TSL 1 (best) BASIC3.1□□□□□ -1.91
VPS39Q96JC1 AC005832.2-201ENST00000538921 1430 ntBASIC3.1□□□□□ -1.91
VPS39Q96JC1 FILIP1L-206ENST00000471562 2854 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
VPS39Q96JC1 MBNL3-205ENST00000370857 8760 ntTSL 5 BASIC3.09□□□□□ -1.91
VPS39Q96JC1 IGSF11-AS1-201ENST00000477009 1604 ntTSL 2 BASIC3.09□□□□□ -1.91
VPS39Q96JC1 AC021237.1-201ENST00000504175 1643 ntTSL 2 BASIC3.09□□□□□ -1.91
VPS39Q96JC1 RPL23AP57-201ENST00000332361 466 ntBASIC3.09□□□□□ -1.91
VPS39Q96JC1 RNU4-68P-201ENST00000364314 141 ntBASIC3.09□□□□□ -1.91
VPS39Q96JC1 LGI1-201ENST00000371413 1247 ntTSL 1 (best) BASIC3.09□□□□□ -1.91
VPS39Q96JC1 RNU6-76P-201ENST00000384060 104 ntBASIC3.09□□□□□ -1.91
VPS39Q96JC1 RNU6-906P-201ENST00000384700 70 ntBASIC3.09□□□□□ -1.91
VPS39Q96JC1 MIR23B-201ENST00000384832 97 ntBASIC3.09□□□□□ -1.91
VPS39Q96JC1 RNU6ATAC40P-201ENST00000408580 137 ntBASIC3.09□□□□□ -1.91
VPS39Q96JC1 RNU6-584P-201ENST00000410350 95 ntBASIC3.09□□□□□ -1.91
VPS39Q96JC1 AL117337.1-201ENST00000412789 444 ntTSL 3 BASIC3.09□□□□□ -1.91
VPS39Q96JC1 MTATP6P20-201ENST00000414147 562 ntBASIC3.09□□□□□ -1.91
VPS39Q96JC1 AC109583.1-201ENST00000432156 268 ntBASIC3.09□□□□□ -1.91
VPS39Q96JC1 AC129850.1-201ENST00000436203 508 ntBASIC3.09□□□□□ -1.91
VPS39Q96JC1 PATE1-202ENST00000437148 457 ntAPPRIS ALT2 TSL 1 (best) BASIC3.09□□□□□ -1.91
VPS39Q96JC1 ARPC3P1-201ENST00000437218 533 ntBASIC3.09□□□□□ -1.91
VPS39Q96JC1 USP9YP22-201ENST00000438971 294 ntBASIC3.09□□□□□ -1.91
VPS39Q96JC1 PRSS3P4-201ENST00000453323 162 ntBASIC3.09□□□□□ -1.91
VPS39Q96JC1 AC092155.2-201ENST00000454675 477 ntBASIC3.09□□□□□ -1.91
VPS39Q96JC1 AL139260.1-202ENST00000456813 441 ntTSL 3 BASIC3.09□□□□□ -1.91
VPS39Q96JC1 USP9YP25-201ENST00000457708 443 ntBASIC3.09□□□□□ -1.91
VPS39Q96JC1 GRM7-AS3-209ENST00000458713 454 ntTSL 3 BASIC3.09□□□□□ -1.91
VPS39Q96JC1 AC091212.1-201ENST00000474798 395 ntTSL 5 BASIC3.09□□□□□ -1.91
VPS39Q96JC1 AC109925.1-201ENST00000478069 331 ntBASIC3.09□□□□□ -1.91
VPS39Q96JC1 HSPE1P6-201ENST00000479457 291 ntBASIC3.09□□□□□ -1.91
VPS39Q96JC1 MTCYBP17-201ENST00000503579 789 ntBASIC3.09□□□□□ -1.91
VPS39Q96JC1 TMEM251P1-201ENST00000503717 318 ntBASIC3.09□□□□□ -1.91
VPS39Q96JC1 AC114981.1-201ENST00000503897 678 ntBASIC3.09□□□□□ -1.91
VPS39Q96JC1 AC008948.1-201ENST00000506058 325 ntTSL 2 BASIC3.09□□□□□ -1.91
VPS39Q96JC1 AC114322.1-201ENST00000506771 926 ntBASIC3.09□□□□□ -1.91
VPS39Q96JC1 RNY4P37-201ENST00000516225 96 ntBASIC3.09□□□□□ -1.91
VPS39Q96JC1 AC023632.5-201ENST00000521010 491 ntTSL 3 BASIC3.09□□□□□ -1.91
VPS39Q96JC1 NRG1-IT1-202ENST00000521463 742 ntTSL 1 (best) BASIC3.09□□□□□ -1.91
VPS39Q96JC1 AP001458.1-201ENST00000532626 92 ntTSL 3 BASIC3.09□□□□□ -1.91
VPS39Q96JC1 LINC02309-201ENST00000553679 207 ntTSL 3 BASIC3.09□□□□□ -1.91
VPS39Q96JC1 AMZ2P1-203ENST00000565833 850 ntBASIC3.09□□□□□ -1.91
VPS39Q96JC1 HMGB1P6-201ENST00000569046 646 ntBASIC3.09□□□□□ -1.91
VPS39Q96JC1 AC104564.2-201ENST00000581240 270 ntTSL 3 BASIC3.09□□□□□ -1.91
VPS39Q96JC1 AC007673.1-201ENST00000590604 1100 ntTSL 5 BASIC3.09□□□□□ -1.91
VPS39Q96JC1 AL670729.3-201ENST00000602345 574 ntTSL 4 BASIC3.09□□□□□ -1.91
VPS39Q96JC1 AL450472.3-201ENST00000615578 367 ntBASIC3.09□□□□□ -1.91
VPS39Q96JC1 OR1S1-201ENST00000624470 978 ntBASIC3.09□□□□□ -1.91
VPS39Q96JC1 AL356473.1-201ENST00000406203 1408 ntBASIC3.09□□□□□ -1.92
VPS39Q96JC1 NEDD4-208ENST00000508342 7235 ntTSL 1 (best) BASIC3.09□□□□□ -1.92
VPS39Q96JC1 NEBL-202ENST00000377122 9216 ntTSL 1 (best) BASIC3.09□□□□□ -1.92
VPS39Q96JC1 CDR1-202ENST00000625883 1485 ntBASIC3.09□□□□□ -1.92
VPS39Q96JC1 ZNF519P1-201ENST00000449011 1626 ntBASIC3.08□□□□□ -1.92
VPS39Q96JC1 SLC30A6-202ENST00000357055 4758 ntTSL 2 BASIC3.08□□□□□ -1.92
VPS39Q96JC1 MUC7-202ENST00000413702 2540 ntAPPRIS P2 TSL 4 BASIC3.08□□□□□ -1.92
VPS39Q96JC1 GYPA-201ENST00000324022 751 ntAPPRIS ALT2 TSL 1 (best) BASIC3.08□□□□□ -1.92
VPS39Q96JC1 NACA3P-201ENST00000359690 648 ntBASIC3.08□□□□□ -1.92
VPS39Q96JC1 RPL7P25-201ENST00000404151 721 ntBASIC3.08□□□□□ -1.92
VPS39Q96JC1 RNU4-47P-201ENST00000410876 114 ntBASIC3.08□□□□□ -1.92
VPS39Q96JC1 SSR1P2-201ENST00000415208 787 ntBASIC3.08□□□□□ -1.92
VPS39Q96JC1 AL513477.1-202ENST00000417061 214 ntBASIC3.08□□□□□ -1.92
VPS39Q96JC1 RPL7P10-201ENST00000417407 739 ntBASIC3.08□□□□□ -1.92
VPS39Q96JC1 DIAPH3-AS1-201ENST00000422052 428 ntTSL 3 BASIC3.08□□□□□ -1.92
VPS39Q96JC1 AL513175.2-201ENST00000422071 443 ntBASIC3.08□□□□□ -1.92
VPS39Q96JC1 NDUFB4P7-201ENST00000423198 363 ntBASIC3.08□□□□□ -1.92
VPS39Q96JC1 TAAR7P-201ENST00000436141 242 ntBASIC3.08□□□□□ -1.92
VPS39Q96JC1 AC006028.1-201ENST00000438379 402 ntBASIC3.08□□□□□ -1.92
VPS39Q96JC1 GYG2-AS1-201ENST00000445107 515 ntTSL 5 BASIC3.08□□□□□ -1.92
VPS39Q96JC1 AL358232.1-201ENST00000448030 501 ntBASIC3.08□□□□□ -1.92
VPS39Q96JC1 AL163192.1-201ENST00000448858 708 ntTSL 5 BASIC3.08□□□□□ -1.92
VPS39Q96JC1 AC108751.4-201ENST00000462931 1001 ntTSL 2 BASIC3.08□□□□□ -1.92
VPS39Q96JC1 RN7SL20P-201ENST00000488827 297 ntBASIC3.08□□□□□ -1.92
VPS39Q96JC1 AC114912.1-201ENST00000503394 546 ntTSL 3 BASIC3.08□□□□□ -1.92
VPS39Q96JC1 CTD-2350J17.1-201ENST00000509228 362 ntTSL 2 BASIC3.08□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 102.3 ms