Protein–RNA interactions for Protein: Q96BD8

SKA1, Spindle and kinetochore-associated protein 1, humanhuman

Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1Q96BD8 MTCYBP39-201ENST00000437562 491 ntBASIC3.82□□□□□ -1.8
SKA1Q96BD8 LINC01698-201ENST00000443636 727 ntTSL 3 BASIC3.82□□□□□ -1.8
SKA1Q96BD8 RPL7P36-201ENST00000444633 681 ntBASIC3.82□□□□□ -1.8
SKA1Q96BD8 RANP8-201ENST00000444720 713 ntBASIC3.82□□□□□ -1.8
SKA1Q96BD8 FGF14-AS1-202ENST00000451630 321 ntTSL 2 BASIC3.82□□□□□ -1.8
SKA1Q96BD8 NHS-AS1-201ENST00000452788 366 ntTSL 3 BASIC3.82□□□□□ -1.8
SKA1Q96BD8 LINC01611-203ENST00000454981 504 ntTSL 3 BASIC3.82□□□□□ -1.8
SKA1Q96BD8 AL034349.1-201ENST00000458367 549 ntTSL 5 BASIC3.82□□□□□ -1.8
SKA1Q96BD8 AC114967.1-201ENST00000504890 259 ntBASIC3.82□□□□□ -1.8
SKA1Q96BD8 AC112198.1-201ENST00000505369 1220 ntBASIC3.82□□□□□ -1.8
SKA1Q96BD8 AC111000.2-201ENST00000507775 550 ntBASIC3.82□□□□□ -1.8
SKA1Q96BD8 TEMN3-AS1-201ENST00000510211 401 ntTSL 3 BASIC3.82□□□□□ -1.8
SKA1Q96BD8 AC010261.1-201ENST00000514411 457 ntTSL 5 BASIC3.82□□□□□ -1.8
SKA1Q96BD8 AC104232.2-201ENST00000519680 769 ntTSL 5 BASIC3.82□□□□□ -1.8
SKA1Q96BD8 CCDC179-202ENST00000532798 791 ntAPPRIS P1 TSL 2 BASIC3.82□□□□□ -1.8
SKA1Q96BD8 AC004024.1-201ENST00000549244 247 ntBASIC3.82□□□□□ -1.8
SKA1Q96BD8 AL133166.1-201ENST00000551040 1034 ntTSL 4 BASIC3.82□□□□□ -1.8
SKA1Q96BD8 AF038458.1-201ENST00000588406 262 ntBASIC3.82□□□□□ -1.8
SKA1Q96BD8 TPMTP1-201ENST00000592307 737 ntBASIC3.82□□□□□ -1.8
SKA1Q96BD8 SRGNP1-201ENST00000603392 451 ntBASIC3.82□□□□□ -1.8
SKA1Q96BD8 AC013553.2-201ENST00000604244 589 ntBASIC3.82□□□□□ -1.8
SKA1Q96BD8 AC091965.4-201ENST00000607691 587 ntBASIC3.82□□□□□ -1.8
SKA1Q96BD8 AC112204.3-201ENST00000623822 332 ntBASIC3.82□□□□□ -1.8
SKA1Q96BD8 AL139220.2-223ENST00000625982 921 ntTSL 5 BASIC3.82□□□□□ -1.8
SKA1Q96BD8 AC068544.1-201ENST00000635064 248 ntTSL 5 BASIC3.82□□□□□ -1.8
SKA1Q96BD8 SLC39A10-202ENST00000409086 5432 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
SKA1Q96BD8 RNF38-203ENST00000353739 4945 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
SKA1Q96BD8 KIAA0586-215ENST00000619722 5597 ntAPPRIS ALT2 TSL 2 BASIC3.82□□□□□ -1.8
SKA1Q96BD8 FKTN-204ENST00000448551 1700 ntTSL 2 BASIC3.81□□□□□ -1.8
SKA1Q96BD8 NDST3-201ENST00000296499 5961 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
SKA1Q96BD8 AC103988.1-201ENST00000566382 2177 ntBASIC3.81□□□□□ -1.8
SKA1Q96BD8 LINC00670-201ENST00000313495 2953 ntTSL 2 BASIC3.81□□□□□ -1.8
SKA1Q96BD8 DPPA3-201ENST00000345088 1079 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
SKA1Q96BD8 MIR199A2-201ENST00000385289 110 ntBASIC3.81□□□□□ -1.8
SKA1Q96BD8 TAS2R15P-201ENST00000390674 928 ntBASIC3.81□□□□□ -1.8
SKA1Q96BD8 CFHR3-203ENST00000391985 1043 ntTSL 2 BASIC3.81□□□□□ -1.8
SKA1Q96BD8 MS4A4E-202ENST00000398986 522 ntAPPRIS P1 TSL 5 BASIC3.81□□□□□ -1.8
SKA1Q96BD8 AL357500.1-201ENST00000413004 279 ntTSL 3 BASIC3.81□□□□□ -1.8
SKA1Q96BD8 MRPL50P2-201ENST00000416821 482 ntBASIC3.81□□□□□ -1.8
SKA1Q96BD8 AL390023.1-201ENST00000428836 262 ntBASIC3.81□□□□□ -1.8
SKA1Q96BD8 AC091286.1-201ENST00000431233 461 ntBASIC3.81□□□□□ -1.8
SKA1Q96BD8 AC012070.1-201ENST00000442062 427 ntTSL 3 BASIC3.81□□□□□ -1.8
SKA1Q96BD8 AL360089.1-201ENST00000442260 436 ntTSL 5 BASIC3.81□□□□□ -1.8
SKA1Q96BD8 RNU6-420P-201ENST00000458780 107 ntBASIC3.81□□□□□ -1.8
SKA1Q96BD8 DNAJC12-205ENST00000483798 769 ntTSL 3 BASIC3.81□□□□□ -1.8
SKA1Q96BD8 RPL23AP41-201ENST00000484754 458 ntBASIC3.81□□□□□ -1.8
SKA1Q96BD8 RPS15AP36-201ENST00000492022 382 ntBASIC3.81□□□□□ -1.8
SKA1Q96BD8 PCBP2P3-201ENST00000509726 843 ntBASIC3.81□□□□□ -1.8
SKA1Q96BD8 CDC42P4-201ENST00000510507 563 ntBASIC3.81□□□□□ -1.8
SKA1Q96BD8 AC010468.2-201ENST00000511981 438 ntTSL 2 BASIC3.81□□□□□ -1.8
SKA1Q96BD8 RN7SKP209-201ENST00000516888 304 ntBASIC3.81□□□□□ -1.8
SKA1Q96BD8 AC025524.2-207ENST00000520097 506 ntTSL 3 BASIC3.81□□□□□ -1.8
SKA1Q96BD8 IGHV3-76-201ENST00000522465 295 ntBASIC3.81□□□□□ -1.8
SKA1Q96BD8 AP000926.4-201ENST00000527351 454 ntBASIC3.81□□□□□ -1.8
SKA1Q96BD8 AP000442.2-202ENST00000531311 601 ntTSL 3 BASIC3.81□□□□□ -1.8
SKA1Q96BD8 AC010183.2-202ENST00000546791 382 ntTSL 3 BASIC3.81□□□□□ -1.8
SKA1Q96BD8 AC012229.1-201ENST00000558699 499 ntTSL 4 BASIC3.81□□□□□ -1.8
SKA1Q96BD8 AC093515.1-201ENST00000567103 445 ntTSL 5 BASIC3.81□□□□□ -1.8
SKA1Q96BD8 AC068790.3-201ENST00000602988 553 ntBASIC3.81□□□□□ -1.8
SKA1Q96BD8 BCRP9-201ENST00000605312 388 ntBASIC3.81□□□□□ -1.8
SKA1Q96BD8 AC063944.3-201ENST00000609969 533 ntBASIC3.81□□□□□ -1.8
SKA1Q96BD8 AC010133.1-201ENST00000615809 842 ntBASIC3.81□□□□□ -1.8
SKA1Q96BD8 CCDC110-202ENST00000393540 2722 ntAPPRIS ALT2 TSL 1 (best) BASIC3.81□□□□□ -1.8
SKA1Q96BD8 RNMT-206ENST00000589866 1879 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
SKA1Q96BD8 TRIM36-201ENST00000282369 4050 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
SKA1Q96BD8 NEB-201ENST00000172853 20634 ntAPPRIS ALT2 TSL 1 (best) BASIC3.81□□□□□ -1.8
SKA1Q96BD8 KIAA1524-206ENST00000491772 3877 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
SKA1Q96BD8 TRIQK-214ENST00000521988 3672 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
SKA1Q96BD8 GEN1-201ENST00000317402 9854 ntAPPRIS P1 TSL 2 BASIC3.8□□□□□ -1.8
SKA1Q96BD8 RNU6-283P-201ENST00000364788 107 ntBASIC3.8□□□□□ -1.8
SKA1Q96BD8 TMCO2-201ENST00000372766 739 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
SKA1Q96BD8 NFIB-202ENST00000380924 840 ntTSL 5 BASIC3.8□□□□□ -1.8
SKA1Q96BD8 U8.11-201ENST00000384699 133 ntBASIC3.8□□□□□ -1.8
SKA1Q96BD8 U8.12-201ENST00000384701 133 ntBASIC3.8□□□□□ -1.8
SKA1Q96BD8 TRAJ59-201ENST00000390480 54 ntAPPRIS P1 BASIC3.8□□□□□ -1.8
SKA1Q96BD8 AC007066.1-201ENST00000392902 381 ntBASIC3.8□□□□□ -1.8
SKA1Q96BD8 AC110754.1-201ENST00000399740 601 ntBASIC3.8□□□□□ -1.8
SKA1Q96BD8 RAP1BP1-201ENST00000412709 553 ntBASIC3.8□□□□□ -1.8
SKA1Q96BD8 AC007179.1-201ENST00000415159 438 ntTSL 3 BASIC3.8□□□□□ -1.8
SKA1Q96BD8 HSPE1P1-201ENST00000421494 318 ntBASIC3.8□□□□□ -1.8
SKA1Q96BD8 AL355303.1-201ENST00000428920 680 ntTSL 3 BASIC3.8□□□□□ -1.8
SKA1Q96BD8 HSPD1P21-201ENST00000436541 245 ntBASIC3.8□□□□□ -1.8
SKA1Q96BD8 AL731568.1-201ENST00000445111 434 ntTSL 2 BASIC3.8□□□□□ -1.8
SKA1Q96BD8 AL365318.1-201ENST00000453128 705 ntTSL 3 BASIC3.8□□□□□ -1.8
SKA1Q96BD8 LINC01445-202ENST00000458615 679 ntTSL 2 BASIC3.8□□□□□ -1.8
SKA1Q96BD8 U8.18-201ENST00000459285 133 ntBASIC3.8□□□□□ -1.8
SKA1Q96BD8 AC084198.1-201ENST00000477747 402 ntBASIC3.8□□□□□ -1.8
SKA1Q96BD8 AC107021.1-202ENST00000480247 555 ntTSL 5 BASIC3.8□□□□□ -1.8
SKA1Q96BD8 THAP6-205ENST00000504190 1004 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
SKA1Q96BD8 AC110768.1-201ENST00000509222 400 ntBASIC3.8□□□□□ -1.8
SKA1Q96BD8 SUMO2P20-201ENST00000520803 283 ntBASIC3.8□□□□□ -1.8
SKA1Q96BD8 AP000857.1-201ENST00000532151 543 ntBASIC3.8□□□□□ -1.8
SKA1Q96BD8 SOX9-AS1-214ENST00000540802 578 ntTSL 4 BASIC3.8□□□□□ -1.8
SKA1Q96BD8 AC093012.1-203ENST00000548437 450 ntTSL 2 BASIC3.8□□□□□ -1.8
SKA1Q96BD8 MEG8-215ENST00000555354 469 ntTSL 3 BASIC3.8□□□□□ -1.8
SKA1Q96BD8 AC079203.2-201ENST00000559867 387 ntTSL 2 BASIC3.8□□□□□ -1.8
SKA1Q96BD8 ACTR3BP3-201ENST00000565577 979 ntBASIC3.8□□□□□ -1.8
SKA1Q96BD8 AC127024.3-201ENST00000582841 460 ntTSL 3 BASIC3.8□□□□□ -1.8
SKA1Q96BD8 LINC01928-201ENST00000591029 504 ntTSL 3 BASIC3.8□□□□□ -1.8
SKA1Q96BD8 AC010320.2-202ENST00000599125 595 ntTSL 4 BASIC3.8□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 102.1 ms