Protein–RNA interactions for Protein: Q6UVK1

CSPG4, Chondroitin sulfate proteoglycan 4, humanhuman

Predictions only

Length 2,322 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4Q6UVK1 AC123767.1-201ENST00000519537 1439 ntTSL 5 BASIC1.39□□□□□ -2.19
CSPG4Q6UVK1 RNU6-174P-201ENST00000410406 106 ntBASIC1.39□□□□□ -2.19
CSPG4Q6UVK1 AL049637.1-201ENST00000424664 503 ntTSL 5 BASIC1.39□□□□□ -2.19
CSPG4Q6UVK1 AC092813.2-201ENST00000434540 399 ntTSL 3 BASIC1.39□□□□□ -2.19
CSPG4Q6UVK1 AC005703.2-201ENST00000453339 343 ntTSL 2 BASIC1.39□□□□□ -2.19
CSPG4Q6UVK1 PCCA-AS1-203ENST00000455958 356 ntTSL 3 BASIC1.39□□□□□ -2.19
CSPG4Q6UVK1 AC034222.1-201ENST00000494052 532 ntBASIC1.39□□□□□ -2.19
CSPG4Q6UVK1 AB015752.1-201ENST00000521975 578 ntTSL 5 BASIC1.39□□□□□ -2.19
CSPG4Q6UVK1 AC055720.2-201ENST00000537724 172 ntTSL 3 BASIC1.39□□□□□ -2.19
CSPG4Q6UVK1 AC025682.1-201ENST00000582389 437 ntTSL 5 BASIC1.39□□□□□ -2.19
CSPG4Q6UVK1 AC008687.2-201ENST00000597865 520 ntBASIC1.39□□□□□ -2.19
CSPG4Q6UVK1 AL645939.4-201ENST00000604495 135 ntBASIC1.39□□□□□ -2.19
CSPG4Q6UVK1 RNF219-AS1-205ENST00000605996 792 ntTSL 5 BASIC1.39□□□□□ -2.19
CSPG4Q6UVK1 AC005156.1-201ENST00000613371 573 ntBASIC1.39□□□□□ -2.19
CSPG4Q6UVK1 HPVC1-201ENST00000629899 1198 ntBASIC1.39□□□□□ -2.19
CSPG4Q6UVK1 AL133216.2-202ENST00000634512 349 ntBASIC1.39□□□□□ -2.19
CSPG4Q6UVK1 ALG6-201ENST00000263440 1895 ntAPPRIS ALT1 TSL 5 BASIC1.39□□□□□ -2.19
CSPG4Q6UVK1 CCDC158-202ENST00000434846 1728 ntTSL 1 (best) BASIC1.39□□□□□ -2.19
CSPG4Q6UVK1 CADM2-AS1-201ENST00000476021 2656 ntTSL 1 (best) BASIC1.39□□□□□ -2.19
CSPG4Q6UVK1 CXADR-205ENST00000400169 1445 ntAPPRIS ALT2 TSL 5 BASIC1.38□□□□□ -2.19
CSPG4Q6UVK1 RNU1-42P-201ENST00000364033 160 ntBASIC1.38□□□□□ -2.19
CSPG4Q6UVK1 HSPE1P26-201ENST00000405341 275 ntBASIC1.38□□□□□ -2.19
CSPG4Q6UVK1 USP9YP27-201ENST00000418455 438 ntBASIC1.38□□□□□ -2.19
CSPG4Q6UVK1 LINC01611-201ENST00000428896 477 ntTSL 5 BASIC1.38□□□□□ -2.19
CSPG4Q6UVK1 AC010976.1-211ENST00000454503 644 ntTSL 2 BASIC1.38□□□□□ -2.19
CSPG4Q6UVK1 RNU6-717P-201ENST00000459076 104 ntBASIC1.38□□□□□ -2.19
CSPG4Q6UVK1 RNA5SP476-201ENST00000516613 103 ntBASIC1.38□□□□□ -2.19
CSPG4Q6UVK1 AC022634.1-201ENST00000520765 532 ntBASIC1.38□□□□□ -2.19
CSPG4Q6UVK1 AC016957.1-201ENST00000534895 309 ntBASIC1.38□□□□□ -2.19
CSPG4Q6UVK1 AL353770.2-201ENST00000620024 78 ntBASIC1.38□□□□□ -2.19
CSPG4Q6UVK1 OR4G1P-203ENST00000641984 1631 ntBASIC1.38□□□□□ -2.19
CSPG4Q6UVK1 RBBP8P1-201ENST00000449447 1844 ntBASIC1.38□□□□□ -2.19
CSPG4Q6UVK1 MTCO1P6-201ENST00000481192 1384 ntBASIC1.38□□□□□ -2.19
CSPG4Q6UVK1 RNU4-41P-201ENST00000364426 143 ntBASIC1.38□□□□□ -2.19
CSPG4Q6UVK1 RNU6-516P-201ENST00000411381 104 ntBASIC1.38□□□□□ -2.19
CSPG4Q6UVK1 RNU6-603P-201ENST00000411403 107 ntBASIC1.38□□□□□ -2.19
CSPG4Q6UVK1 ARPC3P1-201ENST00000437218 533 ntBASIC1.38□□□□□ -2.19
CSPG4Q6UVK1 RPL23AP7-203ENST00000449021 469 ntBASIC1.38□□□□□ -2.19
CSPG4Q6UVK1 PTGES3P5-201ENST00000455109 434 ntBASIC1.38□□□□□ -2.19
CSPG4Q6UVK1 AC092451.1-201ENST00000480211 153 ntBASIC1.38□□□□□ -2.19
CSPG4Q6UVK1 AC090071.1-201ENST00000507713 644 ntBASIC1.38□□□□□ -2.19
CSPG4Q6UVK1 AC090751.1-201ENST00000566966 267 ntBASIC1.38□□□□□ -2.19
CSPG4Q6UVK1 AC090398.1-202ENST00000580403 457 ntTSL 2 BASIC1.38□□□□□ -2.19
CSPG4Q6UVK1 OR6C2-202ENST00000641202 2105 ntAPPRIS P1 BASIC1.38□□□□□ -2.19
CSPG4Q6UVK1 AC010680.1-201ENST00000590024 3590 ntBASIC1.37□□□□□ -2.19
CSPG4Q6UVK1 AL512283.1-201ENST00000606756 1384 ntBASIC1.37□□□□□ -2.19
CSPG4Q6UVK1 EFTUD1P2-201ENST00000514817 1603 ntBASIC1.37□□□□□ -2.19
CSPG4Q6UVK1 HAS2-201ENST00000303924 4190 ntAPPRIS P1 TSL 1 (best) BASIC1.37□□□□□ -2.19
CSPG4Q6UVK1 Y_RNA.68-201ENST00000362881 102 ntBASIC1.37□□□□□ -2.19
CSPG4Q6UVK1 EIF1AXP1-201ENST00000419267 435 ntBASIC1.37□□□□□ -2.19
CSPG4Q6UVK1 LINC00368-201ENST00000422994 650 ntTSL 1 (best) BASIC1.37□□□□□ -2.19
CSPG4Q6UVK1 AC099060.1-201ENST00000427806 448 ntTSL 3 BASIC1.37□□□□□ -2.19
CSPG4Q6UVK1 AL354977.1-201ENST00000438147 679 ntTSL 5 BASIC1.37□□□□□ -2.19
CSPG4Q6UVK1 AL590664.1-201ENST00000448065 339 ntBASIC1.37□□□□□ -2.19
CSPG4Q6UVK1 AL121584.1-201ENST00000453972 519 ntTSL 3 BASIC1.37□□□□□ -2.19
CSPG4Q6UVK1 LNX1-AS1-202ENST00000510785 550 ntTSL 2 BASIC1.37□□□□□ -2.19
CSPG4Q6UVK1 FABP5P5-201ENST00000515537 406 ntBASIC1.37□□□□□ -2.19
CSPG4Q6UVK1 HDAC2-AS2-206ENST00000517965 850 ntTSL 3 BASIC1.37□□□□□ -2.19
CSPG4Q6UVK1 PTP4A1P6-201ENST00000531034 478 ntBASIC1.37□□□□□ -2.19
CSPG4Q6UVK1 SULT1C2P1-202ENST00000562418 459 ntBASIC1.37□□□□□ -2.19
CSPG4Q6UVK1 MIR4421-201ENST00000578133 69 ntBASIC1.37□□□□□ -2.19
CSPG4Q6UVK1 AC015908.2-202ENST00000585243 756 ntTSL 3 BASIC1.37□□□□□ -2.19
CSPG4Q6UVK1 AF230666.1-202ENST00000608375 870 ntTSL 5 BASIC1.37□□□□□ -2.19
CSPG4Q6UVK1 POLK-204ENST00000504026 1484 ntTSL 1 (best) BASIC1.37□□□□□ -2.19
CSPG4Q6UVK1 CCDC54-201ENST00000261058 1444 ntAPPRIS P1 BASIC1.37□□□□□ -2.19
CSPG4Q6UVK1 FSIP2-202ENST00000424728 20788 ntAPPRIS P2 TSL 5 BASIC1.37□□□□□ -2.19
CSPG4Q6UVK1 MFF-206ENST00000392059 1710 ntTSL 5 BASIC1.37□□□□□ -2.19
CSPG4Q6UVK1 HMGB1P13-201ENST00000406019 642 ntBASIC1.37□□□□□ -2.19
CSPG4Q6UVK1 RNU6ATAC20P-201ENST00000408436 127 ntBASIC1.37□□□□□ -2.19
CSPG4Q6UVK1 GNGT1-202ENST00000428834 731 ntTSL 3 BASIC1.37□□□□□ -2.19
CSPG4Q6UVK1 MTCYBP45-201ENST00000435243 565 ntBASIC1.37□□□□□ -2.19
CSPG4Q6UVK1 MYCBP2-AS1-203ENST00000450627 349 ntTSL 3 BASIC1.37□□□□□ -2.19
CSPG4Q6UVK1 HMGB3P30-201ENST00000457863 606 ntBASIC1.37□□□□□ -2.19
CSPG4Q6UVK1 snoU109.4-201ENST00000458953 143 ntBASIC1.37□□□□□ -2.19
CSPG4Q6UVK1 AP000873.1-201ENST00000463987 400 ntBASIC1.37□□□□□ -2.19
CSPG4Q6UVK1 AC135999.1-201ENST00000478962 479 ntBASIC1.37□□□□□ -2.19
CSPG4Q6UVK1 AC012170.1-201ENST00000495139 359 ntBASIC1.37□□□□□ -2.19
CSPG4Q6UVK1 MTCO1P30-201ENST00000515244 580 ntBASIC1.37□□□□□ -2.19
CSPG4Q6UVK1 AC022039.1-201ENST00000527110 488 ntTSL 2 BASIC1.37□□□□□ -2.19
CSPG4Q6UVK1 AC020978.4-201ENST00000569088 460 ntTSL 3 BASIC1.37□□□□□ -2.19
CSPG4Q6UVK1 AP001029.2-202ENST00000588197 739 ntTSL 3 BASIC1.37□□□□□ -2.19
CSPG4Q6UVK1 AL591030.1-201ENST00000626131 627 ntTSL 3 BASIC1.37□□□□□ -2.19
CSPG4Q6UVK1 G3BP1-214ENST00000627077 114 ntTSL 5 BASIC1.37□□□□□ -2.19
CSPG4Q6UVK1 Y_RNA.458-201ENST00000384240 102 ntBASIC1.36□□□□□ -2.19
CSPG4Q6UVK1 AC009302.1-201ENST00000417147 390 ntBASIC1.36□□□□□ -2.19
CSPG4Q6UVK1 AC015971.1-202ENST00000439077 514 ntTSL 3 BASIC1.36□□□□□ -2.19
CSPG4Q6UVK1 AL021397.1-201ENST00000451806 248 ntBASIC1.36□□□□□ -2.19
CSPG4Q6UVK1 AC114801.2-201ENST00000503825 781 ntBASIC1.36□□□□□ -2.19
CSPG4Q6UVK1 AC087286.1-201ENST00000560712 568 ntTSL 3 BASIC1.36□□□□□ -2.19
CSPG4Q6UVK1 AC012640.5-201ENST00000623897 319 ntBASIC1.36□□□□□ -2.19
CSPG4Q6UVK1 TDRD15-202ENST00000622654 5805 ntAPPRIS P1 BASIC1.36□□□□□ -2.19
CSPG4Q6UVK1 AGTR1-208ENST00000475347 1669 ntAPPRIS P1 TSL 3 BASIC1.36□□□□□ -2.19
CSPG4Q6UVK1 MIR124-3-201ENST00000384866 87 ntBASIC1.35□□□□□ -2.19
CSPG4Q6UVK1 TRAJ49-201ENST00000390488 56 ntAPPRIS P1 BASIC1.35□□□□□ -2.19
CSPG4Q6UVK1 AL158834.2-201ENST00000415731 696 ntTSL 2 BASIC1.35□□□□□ -2.19
CSPG4Q6UVK1 SLC44A3-AS1-205ENST00000424505 612 ntBASIC1.35□□□□□ -2.19
CSPG4Q6UVK1 HMGB1P47-201ENST00000511281 589 ntBASIC1.35□□□□□ -2.19
CSPG4Q6UVK1 MIR4419B-201ENST00000577260 68 ntBASIC1.35□□□□□ -2.19
CSPG4Q6UVK1 AC006270.2-201ENST00000578523 652 ntBASIC1.35□□□□□ -2.19
CSPG4Q6UVK1 LIVAR-201ENST00000578633 384 ntTSL 3 BASIC1.35□□□□□ -2.19
Retrieved 100 of 98,524 protein–RNA pairs in 107.1 ms