Protein–RNA interactions for Protein: Q68DE3

USF3, Basic helix-loop-helix domain-containing protein USF3, humanhuman

Predictions only

Length 2,245 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF3Q68DE3 HDAC2-AS2-206ENST00000517965 850 ntTSL 3 BASIC1.44□□□□□ -2.18
USF3Q68DE3 SMARCE1P4-201ENST00000523647 241 ntBASIC1.44□□□□□ -2.18
USF3Q68DE3 NDUFA5P6-201ENST00000542110 379 ntBASIC1.44□□□□□ -2.18
USF3Q68DE3 MT-CO3-201ENST00000362079 784 ntAPPRIS P1 BASIC1.43□□□□□ -2.18
USF3Q68DE3 RNA5SP189-201ENST00000364920 115 ntBASIC1.43□□□□□ -2.18
USF3Q68DE3 XKRYP4-201ENST00000414395 483 ntBASIC1.43□□□□□ -2.18
USF3Q68DE3 IFNA20P-201ENST00000436840 528 ntBASIC1.43□□□□□ -2.18
USF3Q68DE3 XKRYP5-201ENST00000449659 483 ntBASIC1.43□□□□□ -2.18
USF3Q68DE3 RPS29P12-201ENST00000460178 152 ntBASIC1.43□□□□□ -2.18
USF3Q68DE3 AC080013.2-201ENST00000460866 323 ntBASIC1.43□□□□□ -2.18
USF3Q68DE3 MTCYBP17-201ENST00000503579 789 ntBASIC1.43□□□□□ -2.18
USF3Q68DE3 LDHBP3-201ENST00000514909 822 ntBASIC1.43□□□□□ -2.18
USF3Q68DE3 RNA5SP480-201ENST00000516840 109 ntBASIC1.43□□□□□ -2.18
USF3Q68DE3 PLSCR5-201ENST00000443512 1969 ntAPPRIS P1 TSL 1 (best) BASIC1.43□□□□□ -2.18
USF3Q68DE3 CFH-202ENST00000367429 4127 ntAPPRIS P1 TSL 1 (best) BASIC1.43□□□□□ -2.18
USF3Q68DE3 NTS-201ENST00000256010 1237 ntAPPRIS P1 TSL 1 (best) BASIC1.43□□□□□ -2.18
USF3Q68DE3 HMGB1-201ENST00000326004 821 ntTSL 3 BASIC1.43□□□□□ -2.18
USF3Q68DE3 RNA5SP167-201ENST00000365461 116 ntBASIC1.43□□□□□ -2.18
USF3Q68DE3 AC009987.1-201ENST00000446888 806 ntTSL 5 BASIC1.43□□□□□ -2.18
USF3Q68DE3 AC092798.1-201ENST00000458542 409 ntBASIC1.43□□□□□ -2.18
USF3Q68DE3 RNU1-123P-201ENST00000458950 160 ntBASIC1.43□□□□□ -2.18
USF3Q68DE3 OR4P1P-201ENST00000530808 1136 ntBASIC1.43□□□□□ -2.18
USF3Q68DE3 PTP4A1P6-201ENST00000531034 478 ntBASIC1.43□□□□□ -2.18
USF3Q68DE3 AC079907.1-201ENST00000552707 374 ntTSL 3 BASIC1.43□□□□□ -2.18
USF3Q68DE3 AC114546.1-201ENST00000560140 473 ntTSL 3 BASIC1.43□□□□□ -2.18
USF3Q68DE3 SNORD53B-201ENST00000577887 78 ntBASIC1.43□□□□□ -2.18
USF3Q68DE3 MYL12B-204ENST00000584539 1064 ntAPPRIS P1 TSL 3 BASIC1.43□□□□□ -2.18
USF3Q68DE3 SEL1L2-201ENST00000284951 2224 ntAPPRIS P1 TSL 5 BASIC1.42□□□□□ -2.18
USF3Q68DE3 AL137159.1-201ENST00000452808 512 ntBASIC1.42□□□□□ -2.18
USF3Q68DE3 AMD1P1-201ENST00000457220 922 ntBASIC1.42□□□□□ -2.18
USF3Q68DE3 PPP1R2P5-201ENST00000457256 603 ntBASIC1.42□□□□□ -2.18
USF3Q68DE3 FAM104B-204ENST00000472571 1109 ntAPPRIS ALT2 TSL 1 (best) BASIC1.42□□□□□ -2.18
USF3Q68DE3 MTATP6P22-201ENST00000507369 598 ntBASIC1.42□□□□□ -2.18
USF3Q68DE3 MTND2P13-201ENST00000577438 1039 ntBASIC1.42□□□□□ -2.18
USF3Q68DE3 AC012493.3-201ENST00000604494 112 ntBASIC1.42□□□□□ -2.18
USF3Q68DE3 AC010200.2-201ENST00000605098 235 ntBASIC1.42□□□□□ -2.18
USF3Q68DE3 ZNF33CP-201ENST00000432492 2030 ntBASIC1.42□□□□□ -2.18
USF3Q68DE3 TAS2R15P-201ENST00000390674 928 ntBASIC1.42□□□□□ -2.18
USF3Q68DE3 AL445123.1-201ENST00000422023 446 ntTSL 2 BASIC1.42□□□□□ -2.18
USF3Q68DE3 RPS7P2-201ENST00000435134 607 ntBASIC1.42□□□□□ -2.18
USF3Q68DE3 AC010683.1-201ENST00000473673 378 ntBASIC1.42□□□□□ -2.18
USF3Q68DE3 MTCO2P9-201ENST00000503214 694 ntBASIC1.42□□□□□ -2.18
USF3Q68DE3 RAC1P5-201ENST00000512182 576 ntBASIC1.42□□□□□ -2.18
USF3Q68DE3 TET2-AS1-201ENST00000515414 537 ntTSL 5 BASIC1.42□□□□□ -2.18
USF3Q68DE3 RNA5SP364-201ENST00000516938 78 ntBASIC1.42□□□□□ -2.18
USF3Q68DE3 AC087441.2-201ENST00000529141 262 ntBASIC1.42□□□□□ -2.18
USF3Q68DE3 HSPE1P20-201ENST00000538133 289 ntBASIC1.42□□□□□ -2.18
USF3Q68DE3 AL354943.1-201ENST00000572103 781 ntBASIC1.42□□□□□ -2.18
USF3Q68DE3 CERS6-AS1-202ENST00000594898 499 ntTSL 5 BASIC1.42□□□□□ -2.18
USF3Q68DE3 HSPE1P14-201ENST00000605812 302 ntBASIC1.42□□□□□ -2.18
USF3Q68DE3 CERS6-AS1-209ENST00000609766 642 ntTSL 5 BASIC1.42□□□□□ -2.18
USF3Q68DE3 AL391987.6-201ENST00000305671 199 ntBASIC1.41□□□□□ -2.18
USF3Q68DE3 DEFB107A-201ENST00000335021 389 ntAPPRIS P1 TSL 1 (best) BASIC1.41□□□□□ -2.18
USF3Q68DE3 DEFB107B-201ENST00000355602 389 ntAPPRIS P1 TSL 1 (best) BASIC1.41□□□□□ -2.18
USF3Q68DE3 AC004965.1-201ENST00000413033 213 ntBASIC1.41□□□□□ -2.18
USF3Q68DE3 VN1R31P-201ENST00000417498 730 ntBASIC1.41□□□□□ -2.18
USF3Q68DE3 AC013268.2-201ENST00000420753 337 ntBASIC1.41□□□□□ -2.18
USF3Q68DE3 AC009237.2-201ENST00000421358 284 ntBASIC1.41□□□□□ -2.18
USF3Q68DE3 GTF2IP7-202ENST00000436677 309 ntBASIC1.41□□□□□ -2.18
USF3Q68DE3 AC093110.1-201ENST00000456363 602 ntTSL 2 BASIC1.41□□□□□ -2.18
USF3Q68DE3 AGBL4-IT1-201ENST00000457061 514 ntTSL 3 BASIC1.41□□□□□ -2.18
USF3Q68DE3 AC006148.2-201ENST00000467017 650 ntTSL 2 BASIC1.41□□□□□ -2.18
USF3Q68DE3 RPL23AP41-201ENST00000484754 458 ntBASIC1.41□□□□□ -2.18
USF3Q68DE3 C4orf33-204ENST00000502887 1126 ntTSL 1 (best) BASIC1.41□□□□□ -2.18
USF3Q68DE3 AC008427.1-201ENST00000503102 655 ntBASIC1.41□□□□□ -2.18
USF3Q68DE3 OR4V1P-201ENST00000525394 1140 ntBASIC1.41□□□□□ -2.18
USF3Q68DE3 WISP1-OT1-201ENST00000602893 642 ntBASIC1.41□□□□□ -2.18
USF3Q68DE3 AC123768.3-201ENST00000613733 523 ntTSL 3 BASIC1.41□□□□□ -2.18
USF3Q68DE3 C3orf49-203ENST00000616659 876 ntAPPRIS ALT2 TSL 5 BASIC1.41□□□□□ -2.18
USF3Q68DE3 hsa-mir-3158-1.1-201ENST00000637571 81 ntBASIC1.41□□□□□ -2.18
USF3Q68DE3 AGTR1-205ENST00000461609 1545 ntAPPRIS P1 TSL 3 BASIC1.41□□□□□ -2.18
USF3Q68DE3 TMEM68-218ENST00000617782 2477 ntAPPRIS P1 TSL 5 BASIC1.41□□□□□ -2.18
USF3Q68DE3 FAR1-204ENST00000532502 5820 ntTSL 2 BASIC1.41□□□□□ -2.18
USF3Q68DE3 UBE2L2-201ENST00000254302 429 ntBASIC1.4□□□□□ -2.18
USF3Q68DE3 IL36B-202ENST00000327407 1052 ntAPPRIS P1 TSL 1 (best) BASIC1.4□□□□□ -2.18
USF3Q68DE3 SNORA7.1-201ENST00000363750 139 ntBASIC1.4□□□□□ -2.18
USF3Q68DE3 LINC01780-201ENST00000420059 442 ntTSL 2 BASIC1.4□□□□□ -2.18
USF3Q68DE3 AC073359.1-201ENST00000486545 521 ntTSL 2 BASIC1.4□□□□□ -2.18
USF3Q68DE3 AC079203.1-201ENST00000487972 404 ntBASIC1.4□□□□□ -2.18
USF3Q68DE3 AC034234.1-202ENST00000508696 339 ntTSL 3 BASIC1.4□□□□□ -2.18
USF3Q68DE3 AC091906.1-201ENST00000511310 391 ntTSL 2 BASIC1.4□□□□□ -2.18
USF3Q68DE3 RNU6-943P-201ENST00000516960 98 ntBASIC1.4□□□□□ -2.18
USF3Q68DE3 LINC02378-201ENST00000540399 1003 ntTSL 5 BASIC1.4□□□□□ -2.18
USF3Q68DE3 AC006065.5-201ENST00000623427 349 ntBASIC1.4□□□□□ -2.18
USF3Q68DE3 PABPC1P7-201ENST00000413177 1513 ntBASIC1.4□□□□□ -2.18
USF3Q68DE3 NEDD4-205ENST00000506154 6751 ntTSL 1 (best) BASIC1.4□□□□□ -2.19
USF3Q68DE3 DMD-201ENST00000288447 3856 ntTSL 1 (best) BASIC1.4□□□□□ -2.19
USF3Q68DE3 SSR1P1-201ENST00000407630 814 ntBASIC1.4□□□□□ -2.19
USF3Q68DE3 IQCA1-AS1-201ENST00000413353 489 ntTSL 3 BASIC1.4□□□□□ -2.19
USF3Q68DE3 AL591721.1-201ENST00000439849 751 ntTSL 3 BASIC1.4□□□□□ -2.19
USF3Q68DE3 RNU6-1218P-201ENST00000458990 108 ntBASIC1.4□□□□□ -2.19
USF3Q68DE3 LINC02241-202ENST00000512688 467 ntTSL 3 BASIC1.4□□□□□ -2.19
USF3Q68DE3 AC015468.3-201ENST00000518967 417 ntTSL 2 BASIC1.4□□□□□ -2.19
USF3Q68DE3 AC011363.1-201ENST00000524198 458 ntTSL 5 BASIC1.4□□□□□ -2.19
USF3Q68DE3 AC026894.1-202ENST00000533843 477 ntTSL 5 BASIC1.4□□□□□ -2.19
USF3Q68DE3 AC007495.2-202ENST00000564102 535 ntTSL 4 BASIC1.4□□□□□ -2.19
USF3Q68DE3 AC112503.2-201ENST00000609005 552 ntBASIC1.4□□□□□ -2.19
USF3Q68DE3 AL110115.1-201ENST00000614396 364 ntBASIC1.4□□□□□ -2.19
USF3Q68DE3 ZGRF1-212ENST00000612287 2176 ntTSL 1 (best) BASIC1.39□□□□□ -2.19
USF3Q68DE3 AC110792.3-201ENST00000595906 1614 ntBASIC1.39□□□□□ -2.19
Retrieved 100 of 98,524 protein–RNA pairs in 99.3 ms