Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 DYNLT3P1-201ENST00000378574 347 ntBASIC1.53□□□□□ -2.17
CHD9Q3L8U1 AC012370.1-201ENST00000419244 530 ntTSL 3 BASIC1.53□□□□□ -2.17
CHD9Q3L8U1 AC106901.1-201ENST00000425086 698 ntBASIC1.53□□□□□ -2.17
CHD9Q3L8U1 HMGN1P33-201ENST00000432945 451 ntBASIC1.53□□□□□ -2.17
CHD9Q3L8U1 AC090774.1-201ENST00000435925 246 ntBASIC1.53□□□□□ -2.17
CHD9Q3L8U1 AC010406.1-201ENST00000507948 555 ntTSL 3 BASIC1.53□□□□□ -2.17
CHD9Q3L8U1 SLC7A11-AS1-201ENST00000510066 817 ntTSL 2 BASIC1.53□□□□□ -2.17
CHD9Q3L8U1 AC011124.1-204ENST00000522265 562 ntTSL 4 BASIC1.53□□□□□ -2.17
CHD9Q3L8U1 LINC02546-202ENST00000528119 801 ntTSL 5 BASIC1.53□□□□□ -2.17
CHD9Q3L8U1 AC007513.1-201ENST00000548740 379 ntTSL 3 BASIC1.53□□□□□ -2.17
CHD9Q3L8U1 AC006254.3-201ENST00000603353 884 ntBASIC1.53□□□□□ -2.17
CHD9Q3L8U1 ZNF209P-201ENST00000593450 2304 ntBASIC1.52□□□□□ -2.17
CHD9Q3L8U1 ZNF271P-202ENST00000465539 1970 ntBASIC1.52□□□□□ -2.17
CHD9Q3L8U1 RNU6-146P-201ENST00000384602 108 ntBASIC1.52□□□□□ -2.17
CHD9Q3L8U1 LINC01661-201ENST00000415910 708 ntTSL 3 BASIC1.52□□□□□ -2.17
CHD9Q3L8U1 AC068058.1-201ENST00000435782 389 ntTSL 5 BASIC1.52□□□□□ -2.17
CHD9Q3L8U1 AP002345.1-201ENST00000456493 928 ntBASIC1.52□□□□□ -2.17
CHD9Q3L8U1 snoU13.3-201ENST00000459441 104 ntBASIC1.52□□□□□ -2.17
CHD9Q3L8U1 ARL2BPP4-201ENST00000506854 471 ntBASIC1.52□□□□□ -2.17
CHD9Q3L8U1 AC021146.8-201ENST00000507455 733 ntBASIC1.52□□□□□ -2.17
CHD9Q3L8U1 AC109446.2-201ENST00000567872 497 ntBASIC1.52□□□□□ -2.17
CHD9Q3L8U1 CERS6-AS1-202ENST00000594898 499 ntTSL 5 BASIC1.52□□□□□ -2.17
CHD9Q3L8U1 CERS6-AS1-209ENST00000609766 642 ntTSL 5 BASIC1.52□□□□□ -2.17
CHD9Q3L8U1 MIR6734-201ENST00000621166 68 ntBASIC1.52□□□□□ -2.17
CHD9Q3L8U1 AL158801.5-201ENST00000623123 465 ntBASIC1.52□□□□□ -2.17
CHD9Q3L8U1 LIPI-201ENST00000344577 1652 ntAPPRIS P2 TSL 1 (best) BASIC1.52□□□□□ -2.17
CHD9Q3L8U1 AC242426.3-202ENST00000607149 2397 ntTSL 5 BASIC1.52□□□□□ -2.17
CHD9Q3L8U1 DEFB129-201ENST00000246105 698 ntAPPRIS P1 TSL 1 (best) BASIC1.52□□□□□ -2.17
CHD9Q3L8U1 SNORA31-201ENST00000362607 130 ntBASIC1.52□□□□□ -2.17
CHD9Q3L8U1 RPL17P12-201ENST00000413391 526 ntBASIC1.52□□□□□ -2.17
CHD9Q3L8U1 MTND2P2-201ENST00000434633 945 ntBASIC1.52□□□□□ -2.17
CHD9Q3L8U1 TIPARP-AS1-202ENST00000478005 554 ntTSL 4 BASIC1.52□□□□□ -2.17
CHD9Q3L8U1 AP003123.1-201ENST00000526041 333 ntTSL 2 BASIC1.52□□□□□ -2.17
CHD9Q3L8U1 MIR3618-201ENST00000580330 88 ntBASIC1.52□□□□□ -2.17
CHD9Q3L8U1 AC068944.2-201ENST00000610373 403 ntBASIC1.52□□□□□ -2.17
CHD9Q3L8U1 AC067852.7-201ENST00000623270 535 ntBASIC1.52□□□□□ -2.17
CHD9Q3L8U1 EYS-202ENST00000342421 2168 ntTSL 1 (best) BASIC1.51□□□□□ -2.17
CHD9Q3L8U1 RPL5P19-201ENST00000404228 893 ntBASIC1.51□□□□□ -2.17
CHD9Q3L8U1 SEC63P1-201ENST00000425785 1258 ntBASIC1.51□□□□□ -2.17
CHD9Q3L8U1 MTND4LP12-201ENST00000448237 295 ntBASIC1.51□□□□□ -2.17
CHD9Q3L8U1 AL353148.1-201ENST00000449761 463 ntTSL 2 BASIC1.51□□□□□ -2.17
CHD9Q3L8U1 AC022431.1-201ENST00000450941 438 ntBASIC1.51□□□□□ -2.17
CHD9Q3L8U1 AL023584.2-201ENST00000454411 444 ntTSL 5 BASIC1.51□□□□□ -2.17
CHD9Q3L8U1 COX6CP14-201ENST00000469580 174 ntBASIC1.51□□□□□ -2.17
CHD9Q3L8U1 AC104350.1-201ENST00000518750 877 ntTSL 3 BASIC1.51□□□□□ -2.17
CHD9Q3L8U1 MUC15-202ENST00000436318 3118 ntTSL 5 BASIC1.51□□□□□ -2.17
CHD9Q3L8U1 ERBIN-212ENST00000508515 4374 ntTSL 5 BASIC1.51□□□□□ -2.17
CHD9Q3L8U1 MIR373-201ENST00000362273 69 ntBASIC1.51□□□□□ -2.17
CHD9Q3L8U1 RNU6-461P-201ENST00000364195 107 ntBASIC1.51□□□□□ -2.17
CHD9Q3L8U1 TRAJ49-201ENST00000390488 56 ntAPPRIS P1 BASIC1.51□□□□□ -2.17
CHD9Q3L8U1 LINC00368-201ENST00000422994 650 ntTSL 1 (best) BASIC1.51□□□□□ -2.17
CHD9Q3L8U1 KCNJ6-AS1-201ENST00000435001 357 ntTSL 5 BASIC1.51□□□□□ -2.17
CHD9Q3L8U1 IFNWP4-201ENST00000453148 294 ntBASIC1.51□□□□□ -2.17
CHD9Q3L8U1 AC117386.2-202ENST00000472821 522 ntTSL 3 BASIC1.51□□□□□ -2.17
CHD9Q3L8U1 AC097521.1-201ENST00000505488 567 ntTSL 3 BASIC1.51□□□□□ -2.17
CHD9Q3L8U1 AP001804.3-201ENST00000525146 880 ntBASIC1.51□□□□□ -2.17
CHD9Q3L8U1 CACNA1C-IT2-201ENST00000541871 589 ntTSL 2 BASIC1.51□□□□□ -2.17
CHD9Q3L8U1 AC025043.1-201ENST00000558047 625 ntTSL 2 BASIC1.51□□□□□ -2.17
CHD9Q3L8U1 AC022960.1-201ENST00000582269 348 ntTSL 3 BASIC1.51□□□□□ -2.17
CHD9Q3L8U1 AP001029.3-201ENST00000588063 596 ntBASIC1.51□□□□□ -2.17
CHD9Q3L8U1 CGGBP1-202ENST00000398392 5298 ntAPPRIS P1 BASIC1.5□□□□□ -2.17
CHD9Q3L8U1 AL139081.1-201ENST00000452207 382 ntTSL 3 BASIC1.5□□□□□ -2.17
CHD9Q3L8U1 AC021242.2-203ENST00000521842 687 ntTSL 3 BASIC1.5□□□□□ -2.17
CHD9Q3L8U1 CMC2-208ENST00000564249 890 ntAPPRIS P1 TSL 5 BASIC1.5□□□□□ -2.17
CHD9Q3L8U1 AC023813.2-201ENST00000564321 469 ntBASIC1.5□□□□□ -2.17
CHD9Q3L8U1 MIR3935-201ENST00000583472 104 ntBASIC1.5□□□□□ -2.17
CHD9Q3L8U1 MIR3660-201ENST00000584845 100 ntBASIC1.5□□□□□ -2.17
CHD9Q3L8U1 AC104365.1-201ENST00000588835 394 ntTSL 5 BASIC1.5□□□□□ -2.17
CHD9Q3L8U1 AC012321.1-201ENST00000561622 1588 ntBASIC1.5□□□□□ -2.17
CHD9Q3L8U1 AL139294.1-201ENST00000435739 512 ntTSL 2 BASIC1.5□□□□□ -2.17
CHD9Q3L8U1 GTF2IP7-202ENST00000436677 309 ntBASIC1.5□□□□□ -2.17
CHD9Q3L8U1 AL138830.2-202ENST00000446358 786 ntTSL 2 BASIC1.5□□□□□ -2.17
CHD9Q3L8U1 AL049830.2-201ENST00000480072 201 ntBASIC1.5□□□□□ -2.17
CHD9Q3L8U1 RPS29P20-201ENST00000489592 171 ntBASIC1.5□□□□□ -2.17
CHD9Q3L8U1 RNU1-40P-201ENST00000516816 164 ntBASIC1.5□□□□□ -2.17
CHD9Q3L8U1 RNU1-97P-201ENST00000516872 164 ntBASIC1.5□□□□□ -2.17
CHD9Q3L8U1 AC084364.2-201ENST00000546924 395 ntBASIC1.5□□□□□ -2.17
CHD9Q3L8U1 AC012493.3-201ENST00000604494 112 ntBASIC1.5□□□□□ -2.17
CHD9Q3L8U1 MIR98-201ENST00000606724 119 ntBASIC1.5□□□□□ -2.17
CHD9Q3L8U1 AC011124.2-201ENST00000518739 3222 ntTSL 1 (best) BASIC1.5□□□□□ -2.17
CHD9Q3L8U1 AC110774.1-201ENST00000623567 2018 ntBASIC1.5□□□□□ -2.17
CHD9Q3L8U1 AC026347.1-201ENST00000463255 474 ntTSL 3 BASIC1.49□□□□□ -2.17
CHD9Q3L8U1 AC034234.1-202ENST00000508696 339 ntTSL 3 BASIC1.49□□□□□ -2.17
CHD9Q3L8U1 AC008728.1-201ENST00000512730 691 ntTSL 2 BASIC1.49□□□□□ -2.17
CHD9Q3L8U1 MTCYBP19-201ENST00000517463 1124 ntBASIC1.49□□□□□ -2.17
CHD9Q3L8U1 AP000907.2-201ENST00000530827 353 ntBASIC1.49□□□□□ -2.17
CHD9Q3L8U1 AP001001.1-201ENST00000532422 826 ntTSL 3 BASIC1.49□□□□□ -2.17
CHD9Q3L8U1 AL049838.1-201ENST00000563647 981 ntBASIC1.49□□□□□ -2.17
CHD9Q3L8U1 FAM106DP-201ENST00000586416 501 ntBASIC1.49□□□□□ -2.17
CHD9Q3L8U1 AC011518.1-202ENST00000592668 407 ntTSL 5 BASIC1.49□□□□□ -2.17
CHD9Q3L8U1 VN1R79P-201ENST00000593540 513 ntBASIC1.49□□□□□ -2.17
CHD9Q3L8U1 AL590426.2-201ENST00000607287 786 ntTSL 3 BASIC1.49□□□□□ -2.17
CHD9Q3L8U1 JMJD1C-212ENST00000639129 7901 ntAPPRIS ALT2 TSL 5 BASIC1.49□□□□□ -2.17
CHD9Q3L8U1 UEVLD-208ENST00000535484 1963 ntTSL 2 BASIC1.49□□□□□ -2.17
CHD9Q3L8U1 AL049637.1-201ENST00000424664 503 ntTSL 5 BASIC1.49□□□□□ -2.17
CHD9Q3L8U1 OR10R1P-201ENST00000441524 1141 ntBASIC1.49□□□□□ -2.17
CHD9Q3L8U1 AC008885.2-201ENST00000509506 930 ntBASIC1.49□□□□□ -2.17
CHD9Q3L8U1 AP006295.1-201ENST00000532605 585 ntTSL 5 BASIC1.49□□□□□ -2.17
CHD9Q3L8U1 LINC02378-201ENST00000540399 1003 ntTSL 5 BASIC1.49□□□□□ -2.17
CHD9Q3L8U1 AC069228.1-202ENST00000550272 737 ntTSL 3 BASIC1.49□□□□□ -2.17
Retrieved 100 of 98,524 protein–RNA pairs in 81.3 ms