Protein–RNA interactions for Protein: Q12946

FOXF1, Forkhead box protein F1, humanhuman

Predictions only

Length 379 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXF1Q12946 OR4R2P-201ENST00000530815 597 ntBASIC2.07□□□□□ -2.08
FOXF1Q12946 AC011611.5-201ENST00000552477 578 ntBASIC2.07□□□□□ -2.08
FOXF1Q12946 AL356804.1-201ENST00000553791 448 ntTSL 5 BASIC2.07□□□□□ -2.08
FOXF1Q12946 AC019183.1-201ENST00000580524 505 ntTSL 3 BASIC2.07□□□□□ -2.08
FOXF1Q12946 AC008962.1-201ENST00000605729 304 ntBASIC2.07□□□□□ -2.08
FOXF1Q12946 AC026523.1-201ENST00000617221 490 ntTSL 5 BASIC2.07□□□□□ -2.08
FOXF1Q12946 HIKESHI-208ENST00000618164 499 ntTSL 5 BASIC2.07□□□□□ -2.08
FOXF1Q12946 ATXN3L-202ENST00000622204 837 ntTSL 5 BASIC2.07□□□□□ -2.08
FOXF1Q12946 AL160394.1-201ENST00000624765 724 ntBASIC2.07□□□□□ -2.08
FOXF1Q12946 SATB1-AS1-243ENST00000627546 589 ntTSL 5 BASIC2.07□□□□□ -2.08
FOXF1Q12946 SOX2-OT-255ENST00000630150 649 ntTSL 5 BASIC2.07□□□□□ -2.08
FOXF1Q12946 FGF7-206ENST00000614567 3936 ntAPPRIS P1 TSL 1 (best) BASIC2.07□□□□□ -2.08
FOXF1Q12946 Z99496.1-201ENST00000469424 1477 ntBASIC2.07□□□□□ -2.08
FOXF1Q12946 AC244517.1-201ENST00000606030 2086 ntBASIC2.06□□□□□ -2.08
FOXF1Q12946 AC130466.1-201ENST00000636354 4683 ntTSL 5 BASIC2.06□□□□□ -2.08
FOXF1Q12946 RAPGEF6-210ENST00000512052 3535 ntTSL 2 BASIC2.06□□□□□ -2.08
FOXF1Q12946 NACA3P-201ENST00000359690 648 ntBASIC2.06□□□□□ -2.08
FOXF1Q12946 CD24P4-201ENST00000382840 243 ntBASIC2.06□□□□□ -2.08
FOXF1Q12946 OR5H15-201ENST00000383696 930 ntBASIC2.06□□□□□ -2.08
FOXF1Q12946 RNU6-730P-201ENST00000383954 104 ntBASIC2.06□□□□□ -2.08
FOXF1Q12946 RNU6-481P-201ENST00000384194 107 ntBASIC2.06□□□□□ -2.08
FOXF1Q12946 TMSB4XP8-201ENST00000402089 135 ntBASIC2.06□□□□□ -2.08
FOXF1Q12946 MTCO2P31-201ENST00000402702 684 ntBASIC2.06□□□□□ -2.08
FOXF1Q12946 BTF3P7-201ENST00000407097 488 ntBASIC2.06□□□□□ -2.08
FOXF1Q12946 CTNNA2-204ENST00000409266 432 ntTSL 3 BASIC2.06□□□□□ -2.08
FOXF1Q12946 RNU4-53P-201ENST00000410828 140 ntBASIC2.06□□□□□ -2.08
FOXF1Q12946 RNU2-25P-201ENST00000411041 191 ntBASIC2.06□□□□□ -2.08
FOXF1Q12946 AL365184.1-201ENST00000413801 572 ntTSL 3 BASIC2.06□□□□□ -2.08
FOXF1Q12946 AL445183.3-201ENST00000414168 502 ntBASIC2.06□□□□□ -2.08
FOXF1Q12946 TMSB4XP6-201ENST00000415187 135 ntBASIC2.06□□□□□ -2.08
FOXF1Q12946 BX664727.1-201ENST00000416024 466 ntBASIC2.06□□□□□ -2.08
FOXF1Q12946 AC099677.1-201ENST00000420575 175 ntBASIC2.06□□□□□ -2.08
FOXF1Q12946 TMSB4XP1-201ENST00000424567 135 ntBASIC2.06□□□□□ -2.08
FOXF1Q12946 RPP40P1-201ENST00000426762 456 ntBASIC2.06□□□□□ -2.08
FOXF1Q12946 AC018634.1-201ENST00000437554 401 ntBASIC2.06□□□□□ -2.08
FOXF1Q12946 LSM1P1-201ENST00000438629 273 ntBASIC2.06□□□□□ -2.08
FOXF1Q12946 MAP3K13-207ENST00000438798 388 ntTSL 2 BASIC2.06□□□□□ -2.08
FOXF1Q12946 RABEPKP1-201ENST00000440529 1026 ntBASIC2.06□□□□□ -2.08
FOXF1Q12946 AL096803.2-201ENST00000450032 677 ntBASIC2.06□□□□□ -2.08
FOXF1Q12946 CCNB1IP1P3-201ENST00000454702 829 ntBASIC2.06□□□□□ -2.08
FOXF1Q12946 AC004872.1-201ENST00000456062 469 ntTSL 3 BASIC2.06□□□□□ -2.08
FOXF1Q12946 RPS29P12-201ENST00000460178 152 ntBASIC2.06□□□□□ -2.08
FOXF1Q12946 AC128713.1-201ENST00000471495 306 ntBASIC2.06□□□□□ -2.08
FOXF1Q12946 AL162742.2-201ENST00000472915 244 ntTSL 5 BASIC2.06□□□□□ -2.08
FOXF1Q12946 AC112518.2-201ENST00000508565 425 ntBASIC2.06□□□□□ -2.08
FOXF1Q12946 AC017037.2-201ENST00000513850 890 ntBASIC2.06□□□□□ -2.08
FOXF1Q12946 ERHP1-201ENST00000523006 310 ntBASIC2.06□□□□□ -2.08
FOXF1Q12946 TSPAN19-204ENST00000532498 998 ntAPPRIS P1 TSL 5 BASIC2.06□□□□□ -2.08
FOXF1Q12946 AP006295.1-201ENST00000532605 585 ntTSL 5 BASIC2.06□□□□□ -2.08
FOXF1Q12946 AC092747.1-201ENST00000538920 351 ntTSL 5 BASIC2.06□□□□□ -2.08
FOXF1Q12946 PRELID2P1-201ENST00000552837 301 ntBASIC2.06□□□□□ -2.08
FOXF1Q12946 AC087481.2-201ENST00000565492 330 ntBASIC2.06□□□□□ -2.08
FOXF1Q12946 AL035071.2-201ENST00000565572 459 ntTSL 3 BASIC2.06□□□□□ -2.08
FOXF1Q12946 AC133065.1-201ENST00000572017 575 ntTSL 3 BASIC2.06□□□□□ -2.08
FOXF1Q12946 AP000873.2-201ENST00000602381 406 ntTSL 2 BASIC2.06□□□□□ -2.08
FOXF1Q12946 AC092474.3-201ENST00000603022 568 ntBASIC2.06□□□□□ -2.08
FOXF1Q12946 AL355810.1-201ENST00000614629 552 ntBASIC2.06□□□□□ -2.08
FOXF1Q12946 AC090116.1-201ENST00000615679 446 ntBASIC2.06□□□□□ -2.08
FOXF1Q12946 CLECL1-204ENST00000621400 611 ntAPPRIS ALT2 TSL 5 BASIC2.06□□□□□ -2.08
FOXF1Q12946 MTND2P41-201ENST00000637599 773 ntBASIC2.06□□□□□ -2.08
FOXF1Q12946 LINC01376-202ENST00000424895 1949 ntTSL 2 BASIC2.06□□□□□ -2.08
FOXF1Q12946 TTC6-201ENST00000267368 1681 ntTSL 5 BASIC2.06□□□□□ -2.08
FOXF1Q12946 TPTE2-202ENST00000382978 1677 ntTSL 5 BASIC2.06□□□□□ -2.08
FOXF1Q12946 NEDD4-205ENST00000506154 6751 ntTSL 1 (best) BASIC2.05□□□□□ -2.08
FOXF1Q12946 STATH-201ENST00000246895 598 ntAPPRIS P1 TSL 1 (best) BASIC2.05□□□□□ -2.08
FOXF1Q12946 APCS-201ENST00000255040 926 ntAPPRIS P1 TSL 1 (best) BASIC2.05□□□□□ -2.08
FOXF1Q12946 RNA5SP393-201ENST00000363423 117 ntBASIC2.05□□□□□ -2.08
FOXF1Q12946 IVNS1ABP-201ENST00000367497 746 ntTSL 5 BASIC2.05□□□□□ -2.08
FOXF1Q12946 TRAV24-201ENST00000390453 343 ntAPPRIS P1 BASIC2.05□□□□□ -2.08
FOXF1Q12946 RNU6ATAC16P-201ENST00000408591 138 ntBASIC2.05□□□□□ -2.08
FOXF1Q12946 AL078645.1-201ENST00000414377 423 ntTSL 3 BASIC2.05□□□□□ -2.08
FOXF1Q12946 AF241725.1-201ENST00000416182 480 ntTSL 3 BASIC2.05□□□□□ -2.08
FOXF1Q12946 AL158053.1-201ENST00000441503 453 ntBASIC2.05□□□□□ -2.08
FOXF1Q12946 MOB1AP2-201ENST00000446060 614 ntBASIC2.05□□□□□ -2.08
FOXF1Q12946 AC104073.1-201ENST00000451988 151 ntBASIC2.05□□□□□ -2.08
FOXF1Q12946 RPL32P14-201ENST00000463196 378 ntBASIC2.05□□□□□ -2.08
FOXF1Q12946 UBE2Q2P9-201ENST00000490086 202 ntBASIC2.05□□□□□ -2.08
FOXF1Q12946 COL6A4P2-205ENST00000509855 506 ntBASIC2.05□□□□□ -2.08
FOXF1Q12946 AC008413.1-201ENST00000511864 177 ntBASIC2.05□□□□□ -2.08
FOXF1Q12946 RNU6ATAC9P-201ENST00000516210 116 ntBASIC2.05□□□□□ -2.08
FOXF1Q12946 RNU4ATAC10P-201ENST00000516967 122 ntBASIC2.05□□□□□ -2.08
FOXF1Q12946 AC083973.1-205ENST00000518994 601 ntTSL 2 BASIC2.05□□□□□ -2.08
FOXF1Q12946 AC018630.1-201ENST00000541376 925 ntBASIC2.05□□□□□ -2.08
FOXF1Q12946 AC078814.3-201ENST00000553036 491 ntBASIC2.05□□□□□ -2.08
FOXF1Q12946 MIR4666A-201ENST00000580160 79 ntBASIC2.05□□□□□ -2.08
FOXF1Q12946 COX6CP3-201ENST00000580869 223 ntBASIC2.05□□□□□ -2.08
FOXF1Q12946 AC004542.1-201ENST00000602955 264 ntTSL 3 BASIC2.05□□□□□ -2.08
FOXF1Q12946 XIAPP1-201ENST00000603162 600 ntBASIC2.05□□□□□ -2.08
FOXF1Q12946 AC025588.3-201ENST00000604182 274 ntBASIC2.05□□□□□ -2.08
FOXF1Q12946 AL512625.3-207ENST00000609749 477 ntTSL 3 BASIC2.05□□□□□ -2.08
FOXF1Q12946 AC073968.1-201ENST00000618594 637 ntBASIC2.05□□□□□ -2.08
FOXF1Q12946 AC007275.1-201ENST00000621243 671 ntBASIC2.05□□□□□ -2.08
FOXF1Q12946 AC095031.1-201ENST00000623685 672 ntBASIC2.05□□□□□ -2.08
FOXF1Q12946 C8orf89-202ENST00000624510 658 ntAPPRIS P2 TSL 3 BASIC2.05□□□□□ -2.08
FOXF1Q12946 AC073130.1-201ENST00000457033 1958 ntTSL 2 BASIC2.05□□□□□ -2.08
FOXF1Q12946 RNU6-989P-201ENST00000362756 107 ntBASIC2.04□□□□□ -2.08
FOXF1Q12946 RNU1-91P-201ENST00000364746 163 ntBASIC2.04□□□□□ -2.08
FOXF1Q12946 MIR221-201ENST00000385135 110 ntBASIC2.04□□□□□ -2.08
FOXF1Q12946 TPTE2-203ENST00000390680 1558 ntTSL 1 (best) BASIC2.04□□□□□ -2.08
FOXF1Q12946 AL591416.1-201ENST00000404015 867 ntBASIC2.04□□□□□ -2.08
Retrieved 100 of 98,524 protein–RNA pairs in 79 ms