Protein–RNA interactions for Protein: Q02388

COL7A1, Collagen alpha-1(VII) chain, humanhuman

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1Q02388 AC092159.4-201ENST00000624944 550 ntBASIC1.16□□□□□ -2.22
COL7A1Q02388 Clostridiales-1.2-201ENST00000636724 160 ntBASIC1.16□□□□□ -2.22
COL7A1Q02388 C11orf40-201ENST00000307616 654 ntAPPRIS P1 TSL 1 (best) BASIC1.16□□□□□ -2.22
COL7A1Q02388 FTH1P12-201ENST00000432137 551 ntBASIC1.16□□□□□ -2.22
COL7A1Q02388 AL356270.1-201ENST00000456587 522 ntTSL 3 BASIC1.16□□□□□ -2.22
COL7A1Q02388 NMTRQ-TTG12-1-201ENST00000467595 72 ntBASIC1.16□□□□□ -2.22
COL7A1Q02388 AC111194.2-201ENST00000511222 455 ntTSL 5 BASIC1.16□□□□□ -2.22
COL7A1Q02388 FABP5P5-201ENST00000515537 406 ntBASIC1.16□□□□□ -2.22
COL7A1Q02388 SPINK7-205ENST00000523535 299 ntTSL 2 BASIC1.16□□□□□ -2.22
COL7A1Q02388 AL121821.2-201ENST00000556081 394 ntBASIC1.16□□□□□ -2.22
COL7A1Q02388 AC017076.1-201ENST00000607613 578 ntBASIC1.16□□□□□ -2.22
COL7A1Q02388 U73479.1-201ENST00000618062 168 ntBASIC1.16□□□□□ -2.22
COL7A1Q02388 PP2D1-202ENST00000389050 2151 ntAPPRIS P1 TSL 5 BASIC1.15□□□□□ -2.22
COL7A1Q02388 U8.9-201ENST00000365667 134 ntBASIC1.15□□□□□ -2.23
COL7A1Q02388 RNU6-1080P-201ENST00000383982 107 ntBASIC1.15□□□□□ -2.23
COL7A1Q02388 MTND4P13-201ENST00000402078 1023 ntBASIC1.15□□□□□ -2.23
COL7A1Q02388 XKRYP4-201ENST00000414395 483 ntBASIC1.15□□□□□ -2.23
COL7A1Q02388 AL122034.1-201ENST00000427609 497 ntTSL 2 BASIC1.15□□□□□ -2.23
COL7A1Q02388 AC015971.1-202ENST00000439077 514 ntTSL 3 BASIC1.15□□□□□ -2.23
COL7A1Q02388 AL590664.1-201ENST00000448065 339 ntBASIC1.15□□□□□ -2.23
COL7A1Q02388 XKRYP5-201ENST00000449659 483 ntBASIC1.15□□□□□ -2.23
COL7A1Q02388 HMGN1P8-201ENST00000463578 288 ntBASIC1.15□□□□□ -2.23
COL7A1Q02388 RPL7P5-201ENST00000471472 736 ntBASIC1.15□□□□□ -2.23
COL7A1Q02388 AC068633.1-201ENST00000482142 787 ntTSL 5 BASIC1.15□□□□□ -2.23
COL7A1Q02388 AC078918.1-201ENST00000498515 228 ntBASIC1.15□□□□□ -2.23
COL7A1Q02388 TRAV31-201ENST00000502780 342 ntBASIC1.15□□□□□ -2.23
COL7A1Q02388 AC103879.1-201ENST00000503093 255 ntTSL 2 BASIC1.15□□□□□ -2.23
COL7A1Q02388 AC021087.2-201ENST00000504656 1203 ntBASIC1.15□□□□□ -2.23
COL7A1Q02388 AC108078.1-201ENST00000508073 725 ntBASIC1.15□□□□□ -2.23
COL7A1Q02388 RNA5SP309-201ENST00000516670 106 ntBASIC1.15□□□□□ -2.23
COL7A1Q02388 AC087854.1-201ENST00000519706 414 ntBASIC1.15□□□□□ -2.23
COL7A1Q02388 OR8X1P-201ENST00000534542 869 ntBASIC1.15□□□□□ -2.23
COL7A1Q02388 DIAPH2-AS1-203ENST00000542084 450 ntTSL 5 BASIC1.15□□□□□ -2.23
COL7A1Q02388 SULT1C2P1-202ENST00000562418 459 ntBASIC1.15□□□□□ -2.23
COL7A1Q02388 MIR3670-2-201ENST00000582974 65 ntBASIC1.15□□□□□ -2.23
COL7A1Q02388 MIR3670-1-201ENST00000584160 65 ntBASIC1.15□□□□□ -2.23
COL7A1Q02388 MIR3670-3-201ENST00000584855 65 ntBASIC1.15□□□□□ -2.23
COL7A1Q02388 MIR3670-4-201ENST00000612260 65 ntBASIC1.15□□□□□ -2.23
COL7A1Q02388 AL161782.1-201ENST00000622930 586 ntTSL 3 BASIC1.15□□□□□ -2.23
COL7A1Q02388 FGF14-201ENST00000376131 12882 ntTSL 1 (best) BASIC1.15□□□□□ -2.23
COL7A1Q02388 OR2L2-202ENST00000641771 4300 ntAPPRIS P1 BASIC1.15□□□□□ -2.23
COL7A1Q02388 AC009975.1-201ENST00000634588 2698 ntTSL 5 BASIC1.15□□□□□ -2.23
COL7A1Q02388 LRRC77P-206ENST00000481578 2350 ntTSL 1 (best) BASIC1.15□□□□□ -2.23
COL7A1Q02388 RNA5SP138-201ENST00000365098 114 ntBASIC1.15□□□□□ -2.23
COL7A1Q02388 AC240504.1-201ENST00000395709 845 ntBASIC1.15□□□□□ -2.23
COL7A1Q02388 AC013286.1-201ENST00000412137 381 ntTSL 5 BASIC1.15□□□□□ -2.23
COL7A1Q02388 XIST-201ENST00000416330 750 ntTSL 2 BASIC1.15□□□□□ -2.23
COL7A1Q02388 SOS1-IT1-201ENST00000420644 539 ntTSL 5 BASIC1.15□□□□□ -2.23
COL7A1Q02388 ZMYM4-AS1-201ENST00000432683 459 ntTSL 2 BASIC1.15□□□□□ -2.23
COL7A1Q02388 RNU6-717P-201ENST00000459076 104 ntBASIC1.15□□□□□ -2.23
COL7A1Q02388 AC006483.1-201ENST00000487308 313 ntBASIC1.15□□□□□ -2.23
COL7A1Q02388 HMGB3P15-201ENST00000507326 574 ntBASIC1.15□□□□□ -2.23
COL7A1Q02388 SKP1-208ENST00000521216 899 ntAPPRIS ALT1 TSL 5 BASIC1.15□□□□□ -2.23
COL7A1Q02388 AC060766.3-201ENST00000591442 263 ntBASIC1.15□□□□□ -2.23
COL7A1Q02388 VN1R74P-201ENST00000613259 503 ntBASIC1.15□□□□□ -2.23
COL7A1Q02388 AC138649.5-201ENST00000637456 137 ntBASIC1.15□□□□□ -2.23
COL7A1Q02388 SCEL-205ENST00000535157 3096 ntAPPRIS ALT2 TSL 2 BASIC1.15□□□□□ -2.23
COL7A1Q02388 AC010329.2-201ENST00000595195 2737 ntBASIC1.14□□□□□ -2.23
COL7A1Q02388 IFI16-201ENST00000295809 2867 ntAPPRIS ALT2 TSL 5 BASIC1.14□□□□□ -2.23
COL7A1Q02388 RNA5SP257-201ENST00000363023 116 ntBASIC1.14□□□□□ -2.23
COL7A1Q02388 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC1.14□□□□□ -2.23
COL7A1Q02388 AC234781.2-201ENST00000426370 994 ntBASIC1.14□□□□□ -2.23
COL7A1Q02388 RPL23AP7-203ENST00000449021 469 ntBASIC1.14□□□□□ -2.23
COL7A1Q02388 AC109486.1-201ENST00000486833 374 ntBASIC1.14□□□□□ -2.23
COL7A1Q02388 AC034222.1-201ENST00000494052 532 ntBASIC1.14□□□□□ -2.23
COL7A1Q02388 SNORA31.26-201ENST00000517250 137 ntBASIC1.14□□□□□ -2.23
COL7A1Q02388 LINC02490-201ENST00000559915 601 ntTSL 3 BASIC1.14□□□□□ -2.23
COL7A1Q02388 MIR4419B-201ENST00000577260 68 ntBASIC1.14□□□□□ -2.23
COL7A1Q02388 LINC01919-202ENST00000579506 384 ntTSL 3 BASIC1.14□□□□□ -2.23
COL7A1Q02388 AC090227.2-201ENST00000591105 340 ntTSL 5 BASIC1.14□□□□□ -2.23
COL7A1Q02388 ABI1P1-201ENST00000603375 1120 ntBASIC1.14□□□□□ -2.23
COL7A1Q02388 AC243773.3-201ENST00000613270 256 ntBASIC1.14□□□□□ -2.23
COL7A1Q02388 AC098617.1-218ENST00000628836 624 ntTSL 5 BASIC1.14□□□□□ -2.23
COL7A1Q02388 MFF-206ENST00000392059 1710 ntTSL 5 BASIC1.14□□□□□ -2.23
COL7A1Q02388 CNBD1-202ENST00000518476 1594 ntAPPRIS P2 TSL 1 (best) BASIC1.14□□□□□ -2.23
COL7A1Q02388 DYNC2H1-203ENST00000398093 12945 ntAPPRIS P3 TSL 5 BASIC1.14□□□□□ -2.23
COL7A1Q02388 POLK-204ENST00000504026 1484 ntTSL 1 (best) BASIC1.14□□□□□ -2.23
COL7A1Q02388 HSFY1-202ENST00000309834 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC1.14□□□□□ -2.23
COL7A1Q02388 HSFY2-202ENST00000344884 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC1.14□□□□□ -2.23
COL7A1Q02388 RNU1-42P-201ENST00000364033 160 ntBASIC1.14□□□□□ -2.23
COL7A1Q02388 LINC01594-201ENST00000445083 611 ntTSL 5 BASIC1.14□□□□□ -2.23
COL7A1Q02388 AL121584.1-201ENST00000453972 519 ntTSL 3 BASIC1.14□□□□□ -2.23
COL7A1Q02388 LNX1-AS2-201ENST00000502410 347 ntTSL 5 BASIC1.14□□□□□ -2.23
COL7A1Q02388 RPS27AP18-201ENST00000515536 459 ntBASIC1.14□□□□□ -2.23
COL7A1Q02388 MS4A4E-204ENST00000526086 460 ntTSL 1 (best) BASIC1.14□□□□□ -2.23
COL7A1Q02388 VPS29-210ENST00000552130 1057 ntTSL 1 (best) BASIC1.14□□□□□ -2.23
COL7A1Q02388 OR6C3-203ENST00000641740 1093 ntAPPRIS P1 BASIC1.14□□□□□ -2.23
COL7A1Q02388 C9orf153-204ENST00000613665 1738 ntAPPRIS P2 TSL 2 BASIC1.14□□□□□ -2.23
COL7A1Q02388 MDM2-206ENST00000350057 1401 ntTSL 1 (best) BASIC1.13□□□□□ -2.23
COL7A1Q02388 TEX21P-201ENST00000447107 1476 ntBASIC1.13□□□□□ -2.23
COL7A1Q02388 DHFRP5-201ENST00000406944 564 ntBASIC1.13□□□□□ -2.23
COL7A1Q02388 LINC01614-201ENST00000415479 648 ntTSL 2 BASIC1.13□□□□□ -2.23
COL7A1Q02388 BX510359.4-201ENST00000423750 193 ntBASIC1.13□□□□□ -2.23
COL7A1Q02388 NEK4P1-201ENST00000433383 879 ntBASIC1.13□□□□□ -2.23
COL7A1Q02388 SETP8-201ENST00000435341 628 ntBASIC1.13□□□□□ -2.23
COL7A1Q02388 AC009961.3-201ENST00000449832 765 ntBASIC1.13□□□□□ -2.23
COL7A1Q02388 AC027673.1-201ENST00000456245 405 ntBASIC1.13□□□□□ -2.23
COL7A1Q02388 AC093110.1-201ENST00000456363 602 ntTSL 2 BASIC1.13□□□□□ -2.23
COL7A1Q02388 COX6CP14-201ENST00000469580 174 ntBASIC1.13□□□□□ -2.23
COL7A1Q02388 AC109349.1-201ENST00000503299 758 ntTSL 1 (best) BASIC1.13□□□□□ -2.23
Retrieved 100 of 98,524 protein–RNA pairs in 27.1 ms