Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 CKAP2P1-201ENST00000555477 2049 ntBASIC1.2□□□□□ -2.22
PRKDCP78527 Z98749.2-208ENST00000381646 500 ntBASIC1.2□□□□□ -2.22
PRKDCP78527 AC007390.1-201ENST00000415722 356 ntBASIC1.2□□□□□ -2.22
PRKDCP78527 AC069257.1-202ENST00000425275 422 ntTSL 3 BASIC1.2□□□□□ -2.22
PRKDCP78527 AL354695.1-201ENST00000427935 228 ntBASIC1.2□□□□□ -2.22
PRKDCP78527 COX6CP12-201ENST00000446748 202 ntBASIC1.2□□□□□ -2.22
PRKDCP78527 FAM104B-204ENST00000472571 1109 ntAPPRIS ALT2 TSL 1 (best) BASIC1.2□□□□□ -2.22
PRKDCP78527 APOA2-210ENST00000491350 263 ntTSL 1 (best) BASIC1.2□□□□□ -2.22
PRKDCP78527 AC109349.1-201ENST00000503299 758 ntTSL 1 (best) BASIC1.2□□□□□ -2.22
PRKDCP78527 APC-201ENST00000257430 10701 ntAPPRIS P1 TSL 5 BASIC1.2□□□□□ -2.22
PRKDCP78527 C11orf40-201ENST00000307616 654 ntAPPRIS P1 TSL 1 (best) BASIC1.19□□□□□ -2.22
PRKDCP78527 SNORD114-27-201ENST00000363766 70 ntBASIC1.19□□□□□ -2.22
PRKDCP78527 SNORA51.12-201ENST00000384448 134 ntBASIC1.19□□□□□ -2.22
PRKDCP78527 MTND4LP22-201ENST00000508209 276 ntBASIC1.19□□□□□ -2.22
PRKDCP78527 AKIRIN1P1-201ENST00000547384 544 ntBASIC1.19□□□□□ -2.22
PRKDCP78527 AC068446.3-201ENST00000555285 382 ntBASIC1.19□□□□□ -2.22
PRKDCP78527 FAM106DP-201ENST00000586416 501 ntBASIC1.19□□□□□ -2.22
PRKDCP78527 OR51L1-203ENST00000641819 7300 ntAPPRIS P1 BASIC1.19□□□□□ -2.22
PRKDCP78527 RGPD1-204ENST00000559485 5247 ntAPPRIS P2 TSL 1 (best) BASIC1.19□□□□□ -2.22
PRKDCP78527 AGL-204ENST00000370161 6923 ntTSL 5 BASIC1.19□□□□□ -2.22
PRKDCP78527 EYS-204ENST00000370621 10485 ntAPPRIS ALT2 TSL 1 (best) BASIC1.19□□□□□ -2.22
PRKDCP78527 XKRYP4-201ENST00000414395 483 ntBASIC1.19□□□□□ -2.22
PRKDCP78527 AL022400.1-201ENST00000423946 935 ntBASIC1.19□□□□□ -2.22
PRKDCP78527 TRIAP1P1-201ENST00000427062 225 ntBASIC1.19□□□□□ -2.22
PRKDCP78527 LINC01594-201ENST00000445083 611 ntTSL 5 BASIC1.19□□□□□ -2.22
PRKDCP78527 RPL23AP7-203ENST00000449021 469 ntBASIC1.19□□□□□ -2.22
PRKDCP78527 XKRYP5-201ENST00000449659 483 ntBASIC1.19□□□□□ -2.22
PRKDCP78527 AC108078.1-201ENST00000508073 725 ntBASIC1.19□□□□□ -2.22
PRKDCP78527 CA3-AS1-203ENST00000524052 430 ntTSL 2 BASIC1.19□□□□□ -2.22
PRKDCP78527 TTN-AS1-263ENST00000627527 784 ntTSL 5 BASIC1.19□□□□□ -2.22
PRKDCP78527 OXR1-215ENST00000531443 3599 ntTSL 5 BASIC1.19□□□□□ -2.22
PRKDCP78527 AC012321.1-201ENST00000561622 1588 ntBASIC1.19□□□□□ -2.22
PRKDCP78527 DEFB109C-201ENST00000382575 264 ntBASIC1.19□□□□□ -2.22
PRKDCP78527 DEFB109B-201ENST00000382656 264 ntBASIC1.19□□□□□ -2.22
PRKDCP78527 Y_RNA.458-201ENST00000384240 102 ntBASIC1.19□□□□□ -2.22
PRKDCP78527 MTND4P13-201ENST00000402078 1023 ntBASIC1.19□□□□□ -2.22
PRKDCP78527 MIR1323-201ENST00000408090 73 ntBASIC1.19□□□□□ -2.22
PRKDCP78527 HMGB3P2-201ENST00000411913 584 ntBASIC1.19□□□□□ -2.22
PRKDCP78527 AC004946.1-201ENST00000421825 751 ntTSL 3 BASIC1.19□□□□□ -2.22
PRKDCP78527 AC092832.1-201ENST00000422934 400 ntBASIC1.19□□□□□ -2.22
PRKDCP78527 AL122034.1-201ENST00000427609 497 ntTSL 2 BASIC1.19□□□□□ -2.22
PRKDCP78527 AC103957.1-201ENST00000517681 503 ntTSL 3 BASIC1.19□□□□□ -2.22
PRKDCP78527 SEPT7-205ENST00000432293 1362 ntTSL 1 (best) BASIC1.19□□□□□ -2.22
PRKDCP78527 MUC19-205ENST00000454784 24775 ntTSL 5 BASIC1.19□□□□□ -2.22
PRKDCP78527 HMGN2P19-201ENST00000425149 265 ntBASIC1.18□□□□□ -2.22
PRKDCP78527 AC068633.1-201ENST00000482142 787 ntTSL 5 BASIC1.18□□□□□ -2.22
PRKDCP78527 TRAV31-201ENST00000502780 342 ntBASIC1.18□□□□□ -2.22
PRKDCP78527 AF131216.2-201ENST00000512316 564 ntBASIC1.18□□□□□ -2.22
PRKDCP78527 AC087854.1-201ENST00000519706 414 ntBASIC1.18□□□□□ -2.22
PRKDCP78527 IGKV1-33-202ENST00000558152 324 ntAPPRIS ALT2 TSL 5 BASIC1.18□□□□□ -2.22
PRKDCP78527 IGKV1D-33-202ENST00000611734 324 ntAPPRIS ALT2 TSL 5 BASIC1.18□□□□□ -2.22
PRKDCP78527 RFC1-217ENST00000639695 867 ntTSL 5 BASIC1.18□□□□□ -2.22
PRKDCP78527 AC007256.1-201ENST00000392253 2765 ntBASIC1.18□□□□□ -2.22
PRKDCP78527 RNU6ATAC16P-201ENST00000408591 138 ntBASIC1.18□□□□□ -2.22
PRKDCP78527 AL049869.2-201ENST00000556634 365 ntTSL 2 BASIC1.18□□□□□ -2.22
PRKDCP78527 PSMA4-205ENST00000558281 773 ntTSL 3 BASIC1.18□□□□□ -2.22
PRKDCP78527 AC105339.2-201ENST00000558342 1091 ntTSL 3 BASIC1.18□□□□□ -2.22
PRKDCP78527 RPL36A-210ENST00000614077 881 ntTSL 1 (best) BASIC1.18□□□□□ -2.22
PRKDCP78527 AC068544.1-201ENST00000635064 248 ntTSL 5 BASIC1.18□□□□□ -2.22
PRKDCP78527 MBNL3-212ENST00000538204 11294 ntTSL 1 (best) BASIC1.18□□□□□ -2.22
PRKDCP78527 ZNF518A-209ENST00000614149 7911 ntAPPRIS P1 TSL 5 BASIC1.18□□□□□ -2.22
PRKDCP78527 RNA5SP167-201ENST00000365461 116 ntBASIC1.18□□□□□ -2.22
PRKDCP78527 AC012370.1-201ENST00000419244 530 ntTSL 3 BASIC1.18□□□□□ -2.22
PRKDCP78527 LINC01549-201ENST00000440664 714 ntTSL 3 BASIC1.18□□□□□ -2.22
PRKDCP78527 MTND4LP12-201ENST00000448237 295 ntBASIC1.18□□□□□ -2.22
PRKDCP78527 HMGB1P26-201ENST00000452520 628 ntBASIC1.18□□□□□ -2.22
PRKDCP78527 OR7L1P-201ENST00000456181 380 ntBASIC1.18□□□□□ -2.22
PRKDCP78527 AC008571.1-201ENST00000467232 300 ntBASIC1.18□□□□□ -2.22
PRKDCP78527 SLC7A11-AS1-201ENST00000510066 817 ntTSL 2 BASIC1.18□□□□□ -2.22
PRKDCP78527 CD24P2-201ENST00000565486 219 ntBASIC1.18□□□□□ -2.22
PRKDCP78527 AC090751.1-201ENST00000566966 267 ntBASIC1.18□□□□□ -2.22
PRKDCP78527 AC034268.2-201ENST00000571784 482 ntBASIC1.18□□□□□ -2.22
PRKDCP78527 7SK.7-201ENST00000603504 247 ntBASIC1.18□□□□□ -2.22
PRKDCP78527 DYNC2H1-202ENST00000375735 13678 ntAPPRIS ALT1 TSL 1 (best) BASIC1.18□□□□□ -2.22
PRKDCP78527 TDRD15-202ENST00000622654 5805 ntAPPRIS P1 BASIC1.18□□□□□ -2.22
PRKDCP78527 UBE3A-225ENST00000636667 5726 ntTSL 5 BASIC1.18□□□□□ -2.22
PRKDCP78527 MDM2-206ENST00000350057 1401 ntTSL 1 (best) BASIC1.18□□□□□ -2.22
PRKDCP78527 RNA5SP27-201ENST00000363839 119 ntBASIC1.17□□□□□ -2.22
PRKDCP78527 RNU4-13P-201ENST00000364019 141 ntBASIC1.17□□□□□ -2.22
PRKDCP78527 LINC00368-201ENST00000422994 650 ntTSL 1 (best) BASIC1.17□□□□□ -2.22
PRKDCP78527 AC093084.1-201ENST00000424233 687 ntBASIC1.17□□□□□ -2.22
PRKDCP78527 AC005517.2-201ENST00000424673 553 ntBASIC1.17□□□□□ -2.22
PRKDCP78527 AL441989.1-201ENST00000454204 382 ntTSL 3 BASIC1.17□□□□□ -2.22
PRKDCP78527 AC109486.1-201ENST00000486833 374 ntBASIC1.17□□□□□ -2.22
PRKDCP78527 RNA5SP436-201ENST00000516020 115 ntBASIC1.17□□□□□ -2.22
PRKDCP78527 RNU6-1223P-201ENST00000517124 104 ntBASIC1.17□□□□□ -2.22
PRKDCP78527 AL353770.2-201ENST00000620024 78 ntBASIC1.17□□□□□ -2.22
PRKDCP78527 OR4G11P-202ENST00000642116 1414 ntBASIC1.17□□□□□ -2.22
PRKDCP78527 TRAJ17-201ENST00000390520 63 ntAPPRIS P1 BASIC1.17□□□□□ -2.22
PRKDCP78527 RPL23AP29-201ENST00000397284 453 ntBASIC1.17□□□□□ -2.22
PRKDCP78527 HMGB1P12-201ENST00000438594 598 ntBASIC1.17□□□□□ -2.22
PRKDCP78527 AP000926.1-201ENST00000479573 241 ntBASIC1.17□□□□□ -2.22
PRKDCP78527 RNU6-826P-201ENST00000516827 104 ntBASIC1.17□□□□□ -2.22
PRKDCP78527 AC068944.2-201ENST00000610373 403 ntBASIC1.17□□□□□ -2.22
PRKDCP78527 AC138649.5-201ENST00000637456 137 ntBASIC1.17□□□□□ -2.22
PRKDCP78527 UEVLD-208ENST00000535484 1963 ntTSL 2 BASIC1.17□□□□□ -2.22
PRKDCP78527 MSTN-201ENST00000260950 2822 ntAPPRIS P1 TSL 1 (best) BASIC1.17□□□□□ -2.22
PRKDCP78527 CDH8-205ENST00000577730 8009 ntTSL 5 BASIC1.17□□□□□ -2.22
PRKDCP78527 RNA5SP138-201ENST00000365098 114 ntBASIC1.17□□□□□ -2.22
PRKDCP78527 RNA5SP181-201ENST00000410246 98 ntBASIC1.17□□□□□ -2.22
Retrieved 100 of 98,524 protein–RNA pairs in 96 ms