Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 AC005062.1-204ENST00000415499 743 ntTSL 3 BASIC1.65□□□□□ -2.15
FOXA3P55318 AC005005.2-201ENST00000420779 380 ntBASIC1.65□□□□□ -2.15
FOXA3P55318 ABCC5-AS1-201ENST00000422946 469 ntTSL 2 BASIC1.65□□□□□ -2.15
FOXA3P55318 AC107081.2-201ENST00000425779 802 ntTSL 5 BASIC1.65□□□□□ -2.15
FOXA3P55318 AC004869.2-201ENST00000436501 229 ntTSL 3 BASIC1.65□□□□□ -2.15
FOXA3P55318 AL589880.1-201ENST00000448271 287 ntBASIC1.65□□□□□ -2.15
FOXA3P55318 PSPHP1-201ENST00000450062 261 ntBASIC1.65□□□□□ -2.15
FOXA3P55318 LINC01828-202ENST00000450294 955 ntTSL 5 BASIC1.65□□□□□ -2.15
FOXA3P55318 AL021397.1-201ENST00000451806 248 ntBASIC1.65□□□□□ -2.15
FOXA3P55318 RPL23AP49-201ENST00000492925 468 ntBASIC1.65□□□□□ -2.15
FOXA3P55318 RPL30P5-201ENST00000494923 336 ntBASIC1.65□□□□□ -2.15
FOXA3P55318 AC080014.1-201ENST00000496877 1201 ntBASIC1.65□□□□□ -2.15
FOXA3P55318 KATNBL1P4-201ENST00000503545 918 ntBASIC1.65□□□□□ -2.15
FOXA3P55318 MRPS36P2-201ENST00000512569 299 ntBASIC1.65□□□□□ -2.15
FOXA3P55318 LIAS-206ENST00000513731 826 ntTSL 5 BASIC1.65□□□□□ -2.15
FOXA3P55318 RNA5SP24-201ENST00000516478 95 ntBASIC1.65□□□□□ -2.15
FOXA3P55318 CASP1P1-201ENST00000526345 212 ntBASIC1.65□□□□□ -2.15
FOXA3P55318 AC113192.3-201ENST00000529152 742 ntBASIC1.65□□□□□ -2.15
FOXA3P55318 AC068643.2-202ENST00000552759 622 ntTSL 3 BASIC1.65□□□□□ -2.15
FOXA3P55318 LINC02329-201ENST00000554753 511 ntTSL 5 BASIC1.65□□□□□ -2.15
FOXA3P55318 LINC02165-201ENST00000563061 443 ntTSL 3 BASIC1.65□□□□□ -2.15
FOXA3P55318 AC118755.1-201ENST00000572923 195 ntTSL 3 BASIC1.65□□□□□ -2.15
FOXA3P55318 MIR1254-2-201ENST00000579553 63 ntBASIC1.65□□□□□ -2.15
FOXA3P55318 AC011471.1-201ENST00000585766 187 ntBASIC1.65□□□□□ -2.15
FOXA3P55318 ELOCP29-201ENST00000588193 334 ntBASIC1.65□□□□□ -2.15
FOXA3P55318 AC012254.4-201ENST00000588843 273 ntBASIC1.65□□□□□ -2.15
FOXA3P55318 AC024220.1-201ENST00000603675 484 ntBASIC1.65□□□□□ -2.15
FOXA3P55318 AC079610.2-201ENST00000604818 690 ntBASIC1.65□□□□□ -2.15
FOXA3P55318 AC007179.3-201ENST00000604976 235 ntBASIC1.65□□□□□ -2.15
FOXA3P55318 AC242426.3-203ENST00000606757 712 ntTSL 3 BASIC1.65□□□□□ -2.15
FOXA3P55318 AC107214.2-201ENST00000608204 634 ntBASIC1.65□□□□□ -2.15
FOXA3P55318 AC092954.1-201ENST00000609121 445 ntBASIC1.65□□□□□ -2.15
FOXA3P55318 AC096577.2-201ENST00000611455 153 ntBASIC1.65□□□□□ -2.15
FOXA3P55318 HOTTIP_4.1-201ENST00000618195 165 ntBASIC1.65□□□□□ -2.15
FOXA3P55318 AC009159.1-201ENST00000618386 642 ntBASIC1.65□□□□□ -2.15
FOXA3P55318 DUXAP9-208ENST00000622815 614 ntBASIC1.65□□□□□ -2.15
FOXA3P55318 FLG-AS1-207ENST00000628475 497 ntTSL 5 BASIC1.65□□□□□ -2.15
FOXA3P55318 AC098617.1-218ENST00000628836 624 ntTSL 5 BASIC1.65□□□□□ -2.15
FOXA3P55318 SI-201ENST00000264382 6011 ntAPPRIS P1 TSL 1 (best) BASIC1.65□□□□□ -2.15
FOXA3P55318 TRIQK-204ENST00000517858 1882 ntTSL 3 BASIC1.65□□□□□ -2.15
FOXA3P55318 AC008568.2-201ENST00000623862 2313 ntBASIC1.65□□□□□ -2.15
FOXA3P55318 PI15-201ENST00000260113 6732 ntAPPRIS P1 TSL 1 (best) BASIC1.64□□□□□ -2.15
FOXA3P55318 SPA17-201ENST00000227135 853 ntAPPRIS P1 TSL 1 (best) BASIC1.64□□□□□ -2.15
FOXA3P55318 MIR17-201ENST00000385012 84 ntBASIC1.64□□□□□ -2.15
FOXA3P55318 MIR34A-201ENST00000385130 110 ntBASIC1.64□□□□□ -2.15
FOXA3P55318 AL049812.3-201ENST00000412348 417 ntTSL 3 BASIC1.64□□□□□ -2.15
FOXA3P55318 KRR1P1-201ENST00000419430 803 ntBASIC1.64□□□□□ -2.15
FOXA3P55318 AC009276.1-201ENST00000422042 253 ntTSL 5 BASIC1.64□□□□□ -2.15
FOXA3P55318 UBE2V1P5-201ENST00000440070 405 ntBASIC1.64□□□□□ -2.15
FOXA3P55318 AL591719.1-201ENST00000444669 744 ntBASIC1.64□□□□□ -2.15
FOXA3P55318 IGKV1OR-3-201ENST00000446944 348 ntBASIC1.64□□□□□ -2.15
FOXA3P55318 AC012355.1-201ENST00000450290 769 ntTSL 3 BASIC1.64□□□□□ -2.15
FOXA3P55318 AC005703.2-201ENST00000453339 343 ntTSL 2 BASIC1.64□□□□□ -2.15
FOXA3P55318 ANKRD26P4-201ENST00000455755 950 ntBASIC1.64□□□□□ -2.15
FOXA3P55318 snoU13.28-201ENST00000459235 104 ntBASIC1.64□□□□□ -2.15
FOXA3P55318 RNU7-23P-201ENST00000459465 62 ntBASIC1.64□□□□□ -2.15
FOXA3P55318 SRI-210ENST00000490437 570 ntTSL 2 BASIC1.64□□□□□ -2.15
FOXA3P55318 CAB39P1-201ENST00000502277 460 ntBASIC1.64□□□□□ -2.15
FOXA3P55318 MTCYBP17-201ENST00000503579 789 ntBASIC1.64□□□□□ -2.15
FOXA3P55318 AC022118.1-201ENST00000512352 547 ntTSL 5 BASIC1.64□□□□□ -2.15
FOXA3P55318 RNA5SP200-201ENST00000516360 103 ntBASIC1.64□□□□□ -2.15
FOXA3P55318 LINC02143-201ENST00000519929 520 ntTSL 3 BASIC1.64□□□□□ -2.15
FOXA3P55318 AC021269.2-201ENST00000532318 330 ntBASIC1.64□□□□□ -2.15
FOXA3P55318 AL133166.1-201ENST00000551040 1034 ntTSL 4 BASIC1.64□□□□□ -2.15
FOXA3P55318 AC087463.2-201ENST00000565943 472 ntTSL 3 BASIC1.64□□□□□ -2.15
FOXA3P55318 LRRC37A5P-203ENST00000580181 585 ntBASIC1.64□□□□□ -2.15
FOXA3P55318 MYL12B-204ENST00000584539 1064 ntAPPRIS P1 TSL 3 BASIC1.64□□□□□ -2.15
FOXA3P55318 ZFP30-209ENST00000589018 444 ntTSL 5 BASIC1.64□□□□□ -2.15
FOXA3P55318 AC002984.1-201ENST00000591692 448 ntBASIC1.64□□□□□ -2.15
FOXA3P55318 AC005498.1-201ENST00000592125 465 ntBASIC1.64□□□□□ -2.15
FOXA3P55318 AC006023.1-201ENST00000603944 259 ntBASIC1.64□□□□□ -2.15
FOXA3P55318 AC012468.1-201ENST00000604888 430 ntBASIC1.64□□□□□ -2.15
FOXA3P55318 ATP1B3P1-201ENST00000605365 821 ntBASIC1.64□□□□□ -2.15
FOXA3P55318 AC135507.1-201ENST00000607214 561 ntBASIC1.64□□□□□ -2.15
FOXA3P55318 AL160408.5-201ENST00000607759 526 ntTSL 4 BASIC1.64□□□□□ -2.15
FOXA3P55318 AC245100.7-201ENST00000609678 442 ntBASIC1.64□□□□□ -2.15
FOXA3P55318 AP000254.1-201ENST00000609934 520 ntBASIC1.64□□□□□ -2.15
FOXA3P55318 ANKRD36C-207ENST00000612359 650 ntTSL 1 (best) BASIC1.64□□□□□ -2.15
FOXA3P55318 AL513314.2-206ENST00000617276 434 ntTSL 5 BASIC1.64□□□□□ -2.15
FOXA3P55318 AC040168.1-201ENST00000623594 991 ntBASIC1.64□□□□□ -2.15
FOXA3P55318 AC004777.1-201ENST00000624317 287 ntBASIC1.64□□□□□ -2.15
FOXA3P55318 AC092608.3-201ENST00000625017 386 ntBASIC1.64□□□□□ -2.15
FOXA3P55318 AC017104.5-201ENST00000637647 639 ntBASIC1.64□□□□□ -2.15
FOXA3P55318 LMNTD1-204ENST00000458174 1677 ntAPPRIS ALT2 TSL 2 BASIC1.64□□□□□ -2.15
FOXA3P55318 ATP11C-201ENST00000327569 6115 ntAPPRIS P3 TSL 1 (best) BASIC1.64□□□□□ -2.15
FOXA3P55318 AC008432.1-201ENST00000615912 1320 ntBASIC1.64□□□□□ -2.15
FOXA3P55318 SOBP-204ENST00000618129 1550 ntTSL 1 (best) BASIC1.64□□□□□ -2.15
FOXA3P55318 ESF1-202ENST00000617257 1470 ntTSL 5 BASIC1.63□□□□□ -2.15
FOXA3P55318 AC131280.1-202ENST00000624067 4211 ntBASIC1.63□□□□□ -2.15
FOXA3P55318 ZBBX-205ENST00000455345 3185 ntAPPRIS ALT2 TSL 1 (best) BASIC1.63□□□□□ -2.15
FOXA3P55318 MDM2-207ENST00000360430 891 ntTSL 1 (best) BASIC1.63□□□□□ -2.15
FOXA3P55318 RNA5SP160-201ENST00000364866 120 ntBASIC1.63□□□□□ -2.15
FOXA3P55318 RN7SKP226-201ENST00000364912 300 ntBASIC1.63□□□□□ -2.15
FOXA3P55318 SNORA46.1-201ENST00000391069 153 ntBASIC1.63□□□□□ -2.15
FOXA3P55318 AL513008.1-201ENST00000412701 161 ntTSL 5 BASIC1.63□□□□□ -2.15
FOXA3P55318 AC000041.1-201ENST00000439655 175 ntBASIC1.63□□□□□ -2.15
FOXA3P55318 FGF7P5-201ENST00000441829 291 ntBASIC1.63□□□□□ -2.15
FOXA3P55318 MTCYBP3-201ENST00000445588 1137 ntBASIC1.63□□□□□ -2.15
FOXA3P55318 TRGVB-201ENST00000453257 471 ntBASIC1.63□□□□□ -2.15
FOXA3P55318 RPS20P24-201ENST00000457473 361 ntBASIC1.63□□□□□ -2.15
Retrieved 100 of 98,524 protein–RNA pairs in 81.2 ms