Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 FCF1P2-201ENST00000415284 583 ntBASIC2.22□□□□□ -2.05
FOXA1P55317 AL590432.1-201ENST00000420071 566 ntTSL 2 BASIC2.22□□□□□ -2.05
FOXA1P55317 LINC01473-202ENST00000427108 695 ntTSL 5 BASIC2.22□□□□□ -2.05
FOXA1P55317 ABCC13-201ENST00000429114 611 ntTSL 3 BASIC2.22□□□□□ -2.05
FOXA1P55317 AC005345.1-201ENST00000431868 217 ntBASIC2.22□□□□□ -2.05
FOXA1P55317 ATP5F1P1-201ENST00000433775 569 ntBASIC2.22□□□□□ -2.05
FOXA1P55317 PCCA-AS1-203ENST00000455958 356 ntTSL 3 BASIC2.22□□□□□ -2.05
FOXA1P55317 KLHL6-AS1-201ENST00000491676 503 ntTSL 2 BASIC2.22□□□□□ -2.05
FOXA1P55317 AIG1P1-201ENST00000503376 148 ntBASIC2.22□□□□□ -2.05
FOXA1P55317 LINC00492-201ENST00000504436 593 ntTSL 3 BASIC2.22□□□□□ -2.05
FOXA1P55317 AC091860.1-201ENST00000505723 432 ntBASIC2.22□□□□□ -2.05
FOXA1P55317 SNORA31.11-201ENST00000516528 139 ntBASIC2.22□□□□□ -2.05
FOXA1P55317 AC109329.2-201ENST00000519658 482 ntBASIC2.22□□□□□ -2.05
FOXA1P55317 AC019227.1-201ENST00000526902 510 ntBASIC2.22□□□□□ -2.05
FOXA1P55317 AC104237.1-201ENST00000527443 539 ntTSL 4 BASIC2.22□□□□□ -2.05
FOXA1P55317 AC007876.1-201ENST00000527562 983 ntTSL 1 (best) BASIC2.22□□□□□ -2.05
FOXA1P55317 AL035078.2-201ENST00000533832 326 ntTSL 3 BASIC2.22□□□□□ -2.05
FOXA1P55317 AC011773.2-201ENST00000551479 285 ntTSL 5 BASIC2.22□□□□□ -2.05
FOXA1P55317 AC107958.2-201ENST00000555396 592 ntTSL 3 BASIC2.22□□□□□ -2.05
FOXA1P55317 ZNF971P-201ENST00000562068 1249 ntBASIC2.22□□□□□ -2.05
FOXA1P55317 AC090618.1-201ENST00000571972 585 ntTSL 2 BASIC2.22□□□□□ -2.05
FOXA1P55317 AC104365.3-201ENST00000587011 625 ntTSL 5 BASIC2.22□□□□□ -2.05
FOXA1P55317 AC100781.1-202ENST00000597906 463 ntTSL 5 BASIC2.22□□□□□ -2.05
FOXA1P55317 GAS5-AS1-201ENST00000602767 694 ntBASIC2.22□□□□□ -2.05
FOXA1P55317 AL158211.2-201ENST00000607282 395 ntBASIC2.22□□□□□ -2.05
FOXA1P55317 AL160408.5-201ENST00000607759 526 ntTSL 4 BASIC2.22□□□□□ -2.05
FOXA1P55317 LINC00310-205ENST00000609062 863 ntTSL 5 BASIC2.22□□□□□ -2.05
FOXA1P55317 VN1R74P-201ENST00000613259 503 ntBASIC2.22□□□□□ -2.05
FOXA1P55317 MIR6766-201ENST00000622641 72 ntBASIC2.22□□□□□ -2.05
FOXA1P55317 AP003485.2-201ENST00000623636 610 ntBASIC2.22□□□□□ -2.05
FOXA1P55317 MTND2P41-201ENST00000637599 773 ntBASIC2.22□□□□□ -2.05
FOXA1P55317 AP002907.1-201ENST00000606361 1430 ntBASIC2.22□□□□□ -2.05
FOXA1P55317 ARHGAP15-202ENST00000409869 2968 ntTSL 5 BASIC2.22□□□□□ -2.05
FOXA1P55317 AGL-204ENST00000370161 6923 ntTSL 5 BASIC2.21□□□□□ -2.06
FOXA1P55317 CFHR4-201ENST00000251424 1292 ntTSL 1 (best) BASIC2.21□□□□□ -2.06
FOXA1P55317 OR5AC2-201ENST00000358642 930 ntAPPRIS P1 BASIC2.21□□□□□ -2.06
FOXA1P55317 NACA3P-201ENST00000359690 648 ntBASIC2.21□□□□□ -2.06
FOXA1P55317 RNU6-1249P-201ENST00000363237 111 ntBASIC2.21□□□□□ -2.06
FOXA1P55317 RNU5B-1-201ENST00000363286 116 ntBASIC2.21□□□□□ -2.06
FOXA1P55317 RNA5SP126-201ENST00000365092 109 ntBASIC2.21□□□□□ -2.06
FOXA1P55317 C9orf72-202ENST00000379997 1873 ntTSL 2 BASIC2.21□□□□□ -2.06
FOXA1P55317 RNU6-301P-201ENST00000384277 107 ntBASIC2.21□□□□□ -2.06
FOXA1P55317 RNA5SP80-201ENST00000410475 111 ntBASIC2.21□□□□□ -2.06
FOXA1P55317 VN1R51P-201ENST00000411675 945 ntBASIC2.21□□□□□ -2.06
FOXA1P55317 AC109780.2-201ENST00000413467 845 ntBASIC2.21□□□□□ -2.06
FOXA1P55317 LHFPL3-AS1-203ENST00000417290 950 ntTSL 1 (best) BASIC2.21□□□□□ -2.06
FOXA1P55317 AL138900.2-201ENST00000434098 156 ntTSL 3 BASIC2.21□□□□□ -2.06
FOXA1P55317 AC068533.3-201ENST00000435524 404 ntTSL 5 BASIC2.21□□□□□ -2.06
FOXA1P55317 AP000936.1-201ENST00000442124 483 ntTSL 5 BASIC2.21□□□□□ -2.06
FOXA1P55317 UBBP3-201ENST00000445497 241 ntBASIC2.21□□□□□ -2.06
FOXA1P55317 AL353148.1-203ENST00000452286 665 ntTSL 3 BASIC2.21□□□□□ -2.06
FOXA1P55317 MTCO3P2-201ENST00000457365 171 ntBASIC2.21□□□□□ -2.06
FOXA1P55317 snoU13.4-201ENST00000458916 104 ntBASIC2.21□□□□□ -2.06
FOXA1P55317 AC104472.2-201ENST00000469035 601 ntBASIC2.21□□□□□ -2.06
FOXA1P55317 PABPC1P3-201ENST00000469174 459 ntBASIC2.21□□□□□ -2.06
FOXA1P55317 RPS23P3-201ENST00000470993 430 ntBASIC2.21□□□□□ -2.06
FOXA1P55317 MGAT4A-209ENST00000495056 683 ntTSL 2 BASIC2.21□□□□□ -2.06
FOXA1P55317 AC093689.1-203ENST00000505967 299 ntTSL 3 BASIC2.21□□□□□ -2.06
FOXA1P55317 AC107222.1-201ENST00000510899 637 ntBASIC2.21□□□□□ -2.06
FOXA1P55317 LNX1-AS1-203ENST00000511989 488 ntTSL 2 BASIC2.21□□□□□ -2.06
FOXA1P55317 RNU5A-7P-201ENST00000515979 116 ntBASIC2.21□□□□□ -2.06
FOXA1P55317 RNA5SP135-201ENST00000517019 125 ntBASIC2.21□□□□□ -2.06
FOXA1P55317 AP005357.1-201ENST00000520749 476 ntTSL 3 BASIC2.21□□□□□ -2.06
FOXA1P55317 ZNF705CP-201ENST00000530515 889 ntBASIC2.21□□□□□ -2.06
FOXA1P55317 AL133330.2-201ENST00000532760 776 ntTSL 2 BASIC2.21□□□□□ -2.06
FOXA1P55317 DIAPH2-AS1-203ENST00000542084 450 ntTSL 5 BASIC2.21□□□□□ -2.06
FOXA1P55317 COPS2-203ENST00000542928 1580 ntTSL 2 BASIC2.21□□□□□ -2.06
FOXA1P55317 PRELID2P1-201ENST00000552837 301 ntBASIC2.21□□□□□ -2.06
FOXA1P55317 AL118556.1-201ENST00000555257 502 ntTSL 2 BASIC2.21□□□□□ -2.06
FOXA1P55317 LINC01570-201ENST00000561572 434 ntTSL 3 BASIC2.21□□□□□ -2.06
FOXA1P55317 AC009145.1-201ENST00000563230 433 ntTSL 3 BASIC2.21□□□□□ -2.06
FOXA1P55317 AC087481.2-201ENST00000565492 330 ntBASIC2.21□□□□□ -2.06
FOXA1P55317 RPAP2P1-201ENST00000603626 1168 ntBASIC2.21□□□□□ -2.06
FOXA1P55317 AL590426.2-201ENST00000607287 786 ntTSL 3 BASIC2.21□□□□□ -2.06
FOXA1P55317 VIS1.1-201ENST00000610517 203 ntBASIC2.21□□□□□ -2.06
FOXA1P55317 RPL36A-210ENST00000614077 881 ntTSL 1 (best) BASIC2.21□□□□□ -2.06
FOXA1P55317 AL591441.2-201ENST00000620059 535 ntTSL 5 BASIC2.21□□□□□ -2.06
FOXA1P55317 ZNF117-204ENST00000620222 5317 ntAPPRIS P1 TSL 1 (best) BASIC2.21□□□□□ -2.06
FOXA1P55317 AC068880.4-201ENST00000623082 495 ntBASIC2.21□□□□□ -2.06
FOXA1P55317 CEP83-202ENST00000397807 2737 ntTSL 5 BASIC2.21□□□□□ -2.06
FOXA1P55317 AC111188.2-201ENST00000529697 1387 ntBASIC2.21□□□□□ -2.06
FOXA1P55317 OR10AG1-202ENST00000641071 2807 ntAPPRIS P1 BASIC2.2□□□□□ -2.06
FOXA1P55317 FTLP6-201ENST00000355274 422 ntBASIC2.2□□□□□ -2.06
FOXA1P55317 U3.12-201ENST00000364498 214 ntBASIC2.2□□□□□ -2.06
FOXA1P55317 SNORA80E-201ENST00000384744 137 ntBASIC2.2□□□□□ -2.06
FOXA1P55317 RNU6-821P-201ENST00000390995 107 ntBASIC2.2□□□□□ -2.06
FOXA1P55317 MCTS2P-201ENST00000394552 546 ntBASIC2.2□□□□□ -2.06
FOXA1P55317 AL591034.1-201ENST00000407447 340 ntBASIC2.2□□□□□ -2.06
FOXA1P55317 AC013286.1-201ENST00000412137 381 ntTSL 5 BASIC2.2□□□□□ -2.06
FOXA1P55317 AL160272.1-201ENST00000421509 521 ntTSL 3 BASIC2.2□□□□□ -2.06
FOXA1P55317 LINC00368-201ENST00000422994 650 ntTSL 1 (best) BASIC2.2□□□□□ -2.06
FOXA1P55317 AP001599.1-201ENST00000426771 361 ntTSL 3 BASIC2.2□□□□□ -2.06
FOXA1P55317 OFD1P12Y-201ENST00000427963 1207 ntBASIC2.2□□□□□ -2.06
FOXA1P55317 OFD1P13Y-201ENST00000431179 1232 ntBASIC2.2□□□□□ -2.06
FOXA1P55317 RPL23AP16-201ENST00000441715 421 ntBASIC2.2□□□□□ -2.06
FOXA1P55317 AC006148.2-201ENST00000467017 650 ntTSL 2 BASIC2.2□□□□□ -2.06
FOXA1P55317 RPL31P50-201ENST00000471002 296 ntBASIC2.2□□□□□ -2.06
FOXA1P55317 AC084024.2-201ENST00000503480 791 ntBASIC2.2□□□□□ -2.06
FOXA1P55317 C1GALT1P2-201ENST00000510813 1104 ntBASIC2.2□□□□□ -2.06
FOXA1P55317 AC108515.1-201ENST00000517407 525 ntTSL 3 BASIC2.2□□□□□ -2.06
Retrieved 100 of 98,524 protein–RNA pairs in 97.9 ms