Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 AC093278.1-201ENST00000494700 600 ntBASIC3.81□□□□□ -1.8
PTPN9P43378 AL136537.1-201ENST00000508199 538 ntTSL 3 BASIC3.81□□□□□ -1.8
PTPN9P43378 ABCA17P-206ENST00000512848 467 ntTSL 2 BASIC3.81□□□□□ -1.8
PTPN9P43378 RN7SKP298-201ENST00000515950 94 ntBASIC3.81□□□□□ -1.8
PTPN9P43378 RNU6-720P-201ENST00000516363 108 ntBASIC3.81□□□□□ -1.8
PTPN9P43378 RNU6-579P-201ENST00000516879 102 ntBASIC3.81□□□□□ -1.8
PTPN9P43378 RANP9-201ENST00000519957 271 ntBASIC3.81□□□□□ -1.8
PTPN9P43378 AC022616.6-201ENST00000520479 119 ntBASIC3.81□□□□□ -1.8
PTPN9P43378 AP003033.1-201ENST00000527244 415 ntBASIC3.81□□□□□ -1.8
PTPN9P43378 AC106785.1-201ENST00000565935 262 ntBASIC3.81□□□□□ -1.8
PTPN9P43378 EIF1P4-201ENST00000572664 335 ntBASIC3.81□□□□□ -1.8
PTPN9P43378 AC060771.1-201ENST00000582031 164 ntBASIC3.81□□□□□ -1.8
PTPN9P43378 NRBF2P1-201ENST00000587407 859 ntBASIC3.81□□□□□ -1.8
PTPN9P43378 AC103710.3-201ENST00000608157 948 ntBASIC3.81□□□□□ -1.8
PTPN9P43378 Z99129.1-201ENST00000612510 255 ntBASIC3.81□□□□□ -1.8
PTPN9P43378 AC012150.2-201ENST00000621300 544 ntBASIC3.81□□□□□ -1.8
PTPN9P43378 AC009268.2-201ENST00000621925 457 ntBASIC3.81□□□□□ -1.8
PTPN9P43378 ZNF483-201ENST00000309235 3655 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
PTPN9P43378 FAM126A-204ENST00000432176 13177 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
PTPN9P43378 NUDT12-201ENST00000230792 3492 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
PTPN9P43378 ZNF439-201ENST00000304030 2622 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
PTPN9P43378 ADAM28-201ENST00000265769 7052 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
PTPN9P43378 CEP170P1-201ENST00000502249 4587 ntBASIC3.81□□□□□ -1.8
PTPN9P43378 SCEL-202ENST00000377246 3081 ntAPPRIS ALT2 TSL 1 (best) BASIC3.81□□□□□ -1.8
PTPN9P43378 AL161912.2-201ENST00000565707 3007 ntBASIC3.81□□□□□ -1.8
PTPN9P43378 AL645937.1-201ENST00000641739 1652 ntBASIC3.81□□□□□ -1.8
PTPN9P43378 CFHR4-204ENST00000608469 1601 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
PTPN9P43378 PCDH11X-208ENST00000504220 4017 ntAPPRIS ALT2 TSL 1 (best) BASIC3.8□□□□□ -1.8
PTPN9P43378 SKIL-201ENST00000259119 3057 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
PTPN9P43378 NAIP-205ENST00000508426 4153 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
PTPN9P43378 TDRD1-202ENST00000369280 4062 ntAPPRIS ALT2 TSL 5 BASIC3.8□□□□□ -1.8
PTPN9P43378 SYT14-204ENST00000472886 2966 ntAPPRIS P3 TSL 1 (best) BASIC3.8□□□□□ -1.8
PTPN9P43378 TIMM9-202ENST00000395159 1336 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
PTPN9P43378 OSBPL9P4-201ENST00000371707 1800 ntBASIC3.8□□□□□ -1.8
PTPN9P43378 RNU6-283P-201ENST00000364788 107 ntBASIC3.8□□□□□ -1.8
PTPN9P43378 CRISP3-203ENST00000371159 872 ntAPPRIS ALT2 TSL 5 BASIC3.8□□□□□ -1.8
PTPN9P43378 AC009480.1-201ENST00000402410 412 ntTSL 3 BASIC3.8□□□□□ -1.8
PTPN9P43378 RNU2-47P-201ENST00000410649 186 ntBASIC3.8□□□□□ -1.8
PTPN9P43378 AL158839.1-201ENST00000413943 575 ntTSL 2 BASIC3.8□□□□□ -1.8
PTPN9P43378 TEX41-204ENST00000423031 491 ntTSL 4 BASIC3.8□□□□□ -1.8
PTPN9P43378 AC233728.2-201ENST00000425348 757 ntBASIC3.8□□□□□ -1.8
PTPN9P43378 AC006989.1-201ENST00000427212 131 ntBASIC3.8□□□□□ -1.8
PTPN9P43378 USP9YP14-201ENST00000430663 563 ntBASIC3.8□□□□□ -1.8
PTPN9P43378 RABEPKP1-201ENST00000440529 1026 ntBASIC3.8□□□□□ -1.8
PTPN9P43378 AL365258.1-201ENST00000440885 247 ntTSL 3 BASIC3.8□□□□□ -1.8
PTPN9P43378 RPL17P49-201ENST00000443728 411 ntBASIC3.8□□□□□ -1.8
PTPN9P43378 AP1S3-208ENST00000446015 499 ntAPPRIS ALT1 TSL 1 (best) BASIC3.8□□□□□ -1.8
PTPN9P43378 HTR2A-AS1-202ENST00000452352 384 ntTSL 2 BASIC3.8□□□□□ -1.8
PTPN9P43378 AL136097.1-201ENST00000456945 913 ntBASIC3.8□□□□□ -1.8
PTPN9P43378 UBE2Q2P9-201ENST00000490086 202 ntBASIC3.8□□□□□ -1.8
PTPN9P43378 APOA2-210ENST00000491350 263 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
PTPN9P43378 AC023794.1-201ENST00000504210 403 ntTSL 2 BASIC3.8□□□□□ -1.8
PTPN9P43378 AC114741.1-201ENST00000504357 464 ntTSL 2 BASIC3.8□□□□□ -1.8
PTPN9P43378 AC027343.1-201ENST00000504765 407 ntTSL 4 BASIC3.8□□□□□ -1.8
PTPN9P43378 AC063919.1-201ENST00000514281 254 ntTSL 3 BASIC3.8□□□□□ -1.8
PTPN9P43378 MTND4LP31-201ENST00000514859 294 ntBASIC3.8□□□□□ -1.8
PTPN9P43378 IGKV2-23-201ENST00000518729 323 ntBASIC3.8□□□□□ -1.8
PTPN9P43378 AC103783.1-201ENST00000520506 373 ntBASIC3.8□□□□□ -1.8
PTPN9P43378 AP003122.4-201ENST00000530980 758 ntBASIC3.8□□□□□ -1.8
PTPN9P43378 AC136475.4-201ENST00000534271 280 ntTSL 5 BASIC3.8□□□□□ -1.8
PTPN9P43378 AC092745.2-201ENST00000537764 620 ntTSL 3 BASIC3.8□□□□□ -1.8
PTPN9P43378 AC005908.2-201ENST00000546078 530 ntTSL 3 BASIC3.8□□□□□ -1.8
PTPN9P43378 AL157394.1-201ENST00000562983 1224 ntBASIC3.8□□□□□ -1.8
PTPN9P43378 AC092326.1-201ENST00000567465 674 ntTSL 3 BASIC3.8□□□□□ -1.8
PTPN9P43378 AC012182.1-201ENST00000570133 895 ntBASIC3.8□□□□□ -1.8
PTPN9P43378 AC099489.2-201ENST00000574976 260 ntBASIC3.8□□□□□ -1.8
PTPN9P43378 LINC01028-202ENST00000588782 458 ntTSL 3 BASIC3.8□□□□□ -1.8
PTPN9P43378 CKS1BP3-201ENST00000600888 237 ntBASIC3.8□□□□□ -1.8
PTPN9P43378 AC015871.2-201ENST00000603605 948 ntBASIC3.8□□□□□ -1.8
PTPN9P43378 AC080078.2-201ENST00000603766 501 ntBASIC3.8□□□□□ -1.8
PTPN9P43378 AC091805.2-201ENST00000603848 235 ntBASIC3.8□□□□□ -1.8
PTPN9P43378 HMGN2P28-201ENST00000606102 262 ntBASIC3.8□□□□□ -1.8
PTPN9P43378 BX664608.1-201ENST00000610519 487 ntBASIC3.8□□□□□ -1.8
PTPN9P43378 TUG1_1.1-201ENST00000610654 145 ntBASIC3.8□□□□□ -1.8
PTPN9P43378 AC008250.2-201ENST00000615261 205 ntBASIC3.8□□□□□ -1.8
PTPN9P43378 MIR6130-201ENST00000619419 109 ntBASIC3.8□□□□□ -1.8
PTPN9P43378 ZRANB2-AS2-221ENST00000624050 629 ntTSL 5 BASIC3.8□□□□□ -1.8
PTPN9P43378 PISRT1-201ENST00000626175 531 ntBASIC3.8□□□□□ -1.8
PTPN9P43378 PCBP1-AS1-348ENST00000629506 667 ntTSL 5 BASIC3.8□□□□□ -1.8
PTPN9P43378 AC010149.2-201ENST00000637608 315 ntBASIC3.8□□□□□ -1.8
PTPN9P43378 DENND2C-203ENST00000393277 4730 ntTSL 5 BASIC3.8□□□□□ -1.8
PTPN9P43378 RGPD4-201ENST00000408999 5464 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
PTPN9P43378 AK9-201ENST00000285397 2566 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
PTPN9P43378 ERBIN-203ENST00000380938 4701 ntTSL 2 BASIC3.8□□□□□ -1.8
PTPN9P43378 ANGPTL1-202ENST00000367629 2289 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
PTPN9P43378 CKAP5-201ENST00000312055 6532 ntTSL 5 BASIC3.79□□□□□ -1.8
PTPN9P43378 CRISPLD1-205ENST00000523524 2100 ntTSL 2 BASIC3.79□□□□□ -1.8
PTPN9P43378 FAM111A-207ENST00000531147 3996 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
PTPN9P43378 OR5J2-201ENST00000312298 939 ntAPPRIS P1 BASIC3.79□□□□□ -1.8
PTPN9P43378 DEFB108B-201ENST00000328698 222 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
PTPN9P43378 RNA5SP42-201ENST00000364278 115 ntBASIC3.79□□□□□ -1.8
PTPN9P43378 RNU6-335P-201ENST00000364563 113 ntBASIC3.79□□□□□ -1.8
PTPN9P43378 TCEAL7-202ENST00000372666 852 ntAPPRIS P1 TSL 2 BASIC3.79□□□□□ -1.8
PTPN9P43378 RNU6-114P-201ENST00000384704 105 ntBASIC3.79□□□□□ -1.8
PTPN9P43378 RNU6-328P-201ENST00000390887 106 ntBASIC3.79□□□□□ -1.8
PTPN9P43378 RNU6-192P-201ENST00000391253 100 ntBASIC3.79□□□□□ -1.8
PTPN9P43378 AL391417.1-201ENST00000404100 426 ntBASIC3.79□□□□□ -1.8
PTPN9P43378 RNU2-66P-201ENST00000410650 161 ntBASIC3.79□□□□□ -1.8
PTPN9P43378 RNU2-8P-201ENST00000410727 190 ntBASIC3.79□□□□□ -1.8
PTPN9P43378 CYCSP19-201ENST00000411715 316 ntBASIC3.79□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 82.9 ms