Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 AC005702.2-201ENST00000591035 481 ntAPPRIS P1 TSL 3 BASIC4.33□□□□□ -1.72
MSX2P35548 AC006116.10-201ENST00000591836 581 ntBASIC4.33□□□□□ -1.72
MSX2P35548 AC007566.2-201ENST00000603642 413 ntBASIC4.33□□□□□ -1.72
MSX2P35548 AP001330.4-201ENST00000604350 154 ntBASIC4.33□□□□□ -1.72
MSX2P35548 AL022099.1-201ENST00000604551 712 ntBASIC4.33□□□□□ -1.72
MSX2P35548 APOOP1-201ENST00000604695 592 ntBASIC4.33□□□□□ -1.72
MSX2P35548 AC080078.3-201ENST00000605407 463 ntBASIC4.33□□□□□ -1.72
MSX2P35548 RNU6ATAC35P-201ENST00000609276 444 ntBASIC4.33□□□□□ -1.72
MSX2P35548 AL589935.1-202ENST00000612512 393 ntTSL 5 BASIC4.33□□□□□ -1.72
MSX2P35548 AL590491.2-201ENST00000614608 499 ntTSL 5 BASIC4.33□□□□□ -1.72
MSX2P35548 AC084781.2-201ENST00000615568 161 ntBASIC4.33□□□□□ -1.72
MSX2P35548 AC244100.1-202ENST00000621554 382 ntBASIC4.33□□□□□ -1.72
MSX2P35548 AL359757.2-201ENST00000624309 274 ntBASIC4.33□□□□□ -1.72
MSX2P35548 ZNF705E-201ENST00000525199 3442 ntAPPRIS P1 TSL 2 BASIC4.33□□□□□ -1.72
MSX2P35548 ADGRL2-201ENST00000319517 5479 ntAPPRIS P2 TSL 1 (best) BASIC4.33□□□□□ -1.72
MSX2P35548 RACGAP1-202ENST00000427314 3229 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
MSX2P35548 GLCE-201ENST00000261858 5037 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
MSX2P35548 UBE2W-207ENST00000602593 2201 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
MSX2P35548 KIF21A-201ENST00000361418 5044 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
MSX2P35548 CYP3A7-201ENST00000336374 1971 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
MSX2P35548 TMEM106B-201ENST00000396667 12539 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
MSX2P35548 ZNF322-205ENST00000471278 2675 ntAPPRIS P1 TSL 5 BASIC4.32□□□□□ -1.72
MSX2P35548 NKRF-202ENST00000371527 3741 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
MSX2P35548 ZNF43-207ENST00000595461 3399 ntAPPRIS ALT2 TSL 1 (best) BASIC4.32□□□□□ -1.72
MSX2P35548 AC009975.2-201ENST00000635306 1429 ntTSL 5 BASIC4.32□□□□□ -1.72
MSX2P35548 DAZ1-205ENST00000540248 3268 ntTSL 5 BASIC4.32□□□□□ -1.72
MSX2P35548 RN7SKP115-201ENST00000363177 317 ntBASIC4.32□□□□□ -1.72
MSX2P35548 Y_RNA.167-201ENST00000363735 109 ntBASIC4.32□□□□□ -1.72
MSX2P35548 SNORA62.1-201ENST00000364287 154 ntBASIC4.32□□□□□ -1.72
MSX2P35548 SNORD82-201ENST00000365530 70 ntBASIC4.32□□□□□ -1.72
MSX2P35548 Y_RNA.414-201ENST00000384011 101 ntBASIC4.32□□□□□ -1.72
MSX2P35548 MIR153-1-201ENST00000384914 90 ntBASIC4.32□□□□□ -1.72
MSX2P35548 TRAV12-2-201ENST00000390437 445 ntAPPRIS P1 BASIC4.32□□□□□ -1.72
MSX2P35548 DEFB115-201ENST00000400552 267 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
MSX2P35548 AL606923.1-201ENST00000406616 190 ntBASIC4.32□□□□□ -1.72
MSX2P35548 AC114755.2-201ENST00000413520 361 ntBASIC4.32□□□□□ -1.72
MSX2P35548 CBLL1-202ENST00000415884 804 ntTSL 5 BASIC4.32□□□□□ -1.72
MSX2P35548 AL161631.1-201ENST00000417933 486 ntBASIC4.32□□□□□ -1.72
MSX2P35548 AC079163.1-201ENST00000418416 407 ntTSL 2 BASIC4.32□□□□□ -1.72
MSX2P35548 RAC1P7-201ENST00000445367 377 ntBASIC4.32□□□□□ -1.72
MSX2P35548 AL118520.1-201ENST00000450770 291 ntBASIC4.32□□□□□ -1.72
MSX2P35548 LINC00571-203ENST00000454060 525 ntTSL 3 BASIC4.32□□□□□ -1.72
MSX2P35548 AC108059.3-201ENST00000456388 214 ntBASIC4.32□□□□□ -1.72
MSX2P35548 RNU7-182P-201ENST00000459009 62 ntBASIC4.32□□□□□ -1.72
MSX2P35548 Y_RNA.635-201ENST00000459041 101 ntBASIC4.32□□□□□ -1.72
MSX2P35548 RNU6ATAC28P-201ENST00000459249 118 ntBASIC4.32□□□□□ -1.72
MSX2P35548 AC005532.2-201ENST00000467154 373 ntBASIC4.32□□□□□ -1.72
MSX2P35548 AC006967.1-201ENST00000467608 589 ntBASIC4.32□□□□□ -1.72
MSX2P35548 RPL21P103-201ENST00000479921 488 ntBASIC4.32□□□□□ -1.72
MSX2P35548 AC068633.1-201ENST00000482142 787 ntTSL 5 BASIC4.32□□□□□ -1.72
MSX2P35548 RN7SL727P-201ENST00000482164 296 ntBASIC4.32□□□□□ -1.72
MSX2P35548 AC025164.1-201ENST00000496249 478 ntBASIC4.32□□□□□ -1.72
MSX2P35548 AC140172.1-201ENST00000502928 141 ntBASIC4.32□□□□□ -1.72
MSX2P35548 AC139718.1-201ENST00000508010 300 ntTSL 5 BASIC4.32□□□□□ -1.72
MSX2P35548 AC004980.4-201ENST00000513375 203 ntBASIC4.32□□□□□ -1.72
MSX2P35548 RNU1-6P-201ENST00000516290 144 ntBASIC4.32□□□□□ -1.72
MSX2P35548 RNU6-1046P-201ENST00000516538 107 ntBASIC4.32□□□□□ -1.72
MSX2P35548 STX3-204ENST00000530221 534 ntTSL 5 BASIC4.32□□□□□ -1.72
MSX2P35548 AC103798.1-201ENST00000532562 376 ntTSL 2 BASIC4.32□□□□□ -1.72
MSX2P35548 AP002989.1-201ENST00000533459 562 ntTSL 4 BASIC4.32□□□□□ -1.72
MSX2P35548 LINC02300-201ENST00000549742 665 ntTSL 4 BASIC4.32□□□□□ -1.72
MSX2P35548 AL355836.1-201ENST00000555951 870 ntBASIC4.32□□□□□ -1.72
MSX2P35548 AC091073.1-201ENST00000559620 666 ntTSL 3 BASIC4.32□□□□□ -1.72
MSX2P35548 LINC00649-204ENST00000593977 640 ntTSL 5 BASIC4.32□□□□□ -1.72
MSX2P35548 ZEB2-AS1-204ENST00000595109 855 ntTSL 5 BASIC4.32□□□□□ -1.72
MSX2P35548 AC022150.3-201ENST00000599143 880 ntTSL 5 BASIC4.32□□□□□ -1.72
MSX2P35548 AC008737.2-201ENST00000599446 118 ntBASIC4.32□□□□□ -1.72
MSX2P35548 DPPA3P3-201ENST00000603842 430 ntBASIC4.32□□□□□ -1.72
MSX2P35548 TEX41-238ENST00000604253 709 ntTSL 5 BASIC4.32□□□□□ -1.72
MSX2P35548 CTHRC1P1-201ENST00000605383 469 ntBASIC4.32□□□□□ -1.72
MSX2P35548 AC024940.4-201ENST00000605507 246 ntBASIC4.32□□□□□ -1.72
MSX2P35548 AC098617.1-203ENST00000609865 277 ntTSL 5 BASIC4.32□□□□□ -1.72
MSX2P35548 AL158196.1-201ENST00000616786 434 ntBASIC4.32□□□□□ -1.72
MSX2P35548 LINC00923-207ENST00000619015 505 ntTSL 5 BASIC4.32□□□□□ -1.72
MSX2P35548 CR381572.2-201ENST00000624852 397 ntBASIC4.32□□□□□ -1.72
MSX2P35548 MGAT4A-204ENST00000414521 3709 ntTSL 2 BASIC4.32□□□□□ -1.72
MSX2P35548 SPATA31D2P-201ENST00000429999 4388 ntBASIC4.32□□□□□ -1.72
MSX2P35548 AC092329.3-201ENST00000611392 1904 ntAPPRIS P1 TSL 5 BASIC4.32□□□□□ -1.72
MSX2P35548 FOXP2-226ENST00000635638 2598 ntAPPRIS ALT1 TSL 5 BASIC4.32□□□□□ -1.72
MSX2P35548 KMO-204ENST00000366559 5261 ntAPPRIS P2 TSL 1 (best) BASIC4.32□□□□□ -1.72
MSX2P35548 MTND5P16-201ENST00000460269 1703 ntBASIC4.32□□□□□ -1.72
MSX2P35548 ETV1-205ENST00000405192 4402 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
MSX2P35548 CENPI-201ENST00000372926 2375 ntAPPRIS ALT2 TSL 5 BASIC4.32□□□□□ -1.72
MSX2P35548 TAS2R13-201ENST00000390677 1637 ntAPPRIS P1 BASIC4.32□□□□□ -1.72
MSX2P35548 TAB3P1-202ENST00000452645 1634 ntBASIC4.32□□□□□ -1.72
MSX2P35548 ZFAND6-212ENST00000559775 1602 ntAPPRIS P1 TSL 2 BASIC4.32□□□□□ -1.72
MSX2P35548 AL591441.1-201ENST00000618108 2247 ntTSL 2 BASIC4.31□□□□□ -1.72
MSX2P35548 KIF15-203ENST00000425755 3460 ntTSL 5 BASIC4.31□□□□□ -1.72
MSX2P35548 MTCO1P12-201ENST00000414273 1543 ntBASIC4.31□□□□□ -1.72
MSX2P35548 THEMIS-205ENST00000626040 3179 ntAPPRIS ALT2 TSL 2 BASIC4.31□□□□□ -1.72
MSX2P35548 ZEB1-202ENST00000361642 5990 ntAPPRIS ALT2 TSL 1 (best) BASIC4.31□□□□□ -1.72
MSX2P35548 ELAVL2-202ENST00000380110 3691 ntTSL 5 BASIC4.31□□□□□ -1.72
MSX2P35548 ZNF808-201ENST00000359798 3600 ntAPPRIS P1 TSL 5 BASIC4.31□□□□□ -1.72
MSX2P35548 RNU1-15P-201ENST00000353977 144 ntBASIC4.31□□□□□ -1.72
MSX2P35548 MIR448-201ENST00000362131 111 ntBASIC4.31□□□□□ -1.72
MSX2P35548 RNA5SP507-201ENST00000363603 121 ntBASIC4.31□□□□□ -1.72
MSX2P35548 MDM4-202ENST00000367180 547 ntTSL 3 BASIC4.31□□□□□ -1.72
MSX2P35548 Y_RNA.445-201ENST00000384168 102 ntBASIC4.31□□□□□ -1.72
MSX2P35548 Y_RNA.530-201ENST00000384587 101 ntBASIC4.31□□□□□ -1.72
MSX2P35548 MIR585-201ENST00000384887 94 ntBASIC4.31□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 82.3 ms