Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 AC003985.1-201ENST00000414127 362 ntTSL 3 BASIC4.47□□□□□ -1.69
SMARCA1P28370 AL135908.1-201ENST00000431394 446 ntTSL 3 BASIC4.47□□□□□ -1.69
SMARCA1P28370 AL596276.1-201ENST00000434465 418 ntBASIC4.47□□□□□ -1.69
SMARCA1P28370 LINC01423-202ENST00000436845 423 ntTSL 2 BASIC4.47□□□□□ -1.69
SMARCA1P28370 Z99127.3-201ENST00000448158 395 ntBASIC4.47□□□□□ -1.69
SMARCA1P28370 FGF7P6-202ENST00000451282 293 ntBASIC4.47□□□□□ -1.69
SMARCA1P28370 AL844175.1-201ENST00000455153 323 ntTSL 5 BASIC4.47□□□□□ -1.69
SMARCA1P28370 C1DP4-201ENST00000455429 424 ntBASIC4.47□□□□□ -1.69
SMARCA1P28370 AC013267.1-201ENST00000458227 267 ntBASIC4.47□□□□□ -1.69
SMARCA1P28370 SNORD121B-201ENST00000458838 81 ntBASIC4.47□□□□□ -1.69
SMARCA1P28370 snoU109.4-201ENST00000458953 143 ntBASIC4.47□□□□□ -1.69
SMARCA1P28370 AP000873.1-201ENST00000463987 400 ntBASIC4.47□□□□□ -1.69
SMARCA1P28370 Z84488.1-201ENST00000476099 530 ntTSL 2 BASIC4.47□□□□□ -1.69
SMARCA1P28370 AC078817.1-201ENST00000492623 435 ntBASIC4.47□□□□□ -1.69
SMARCA1P28370 LINC02469-201ENST00000506460 741 ntTSL 3 BASIC4.47□□□□□ -1.69
SMARCA1P28370 FAM92A1P1-201ENST00000528023 890 ntBASIC4.47□□□□□ -1.69
SMARCA1P28370 AL139317.3-202ENST00000555689 528 ntTSL 5 BASIC4.47□□□□□ -1.69
SMARCA1P28370 AL133241.1-201ENST00000556832 487 ntBASIC4.47□□□□□ -1.69
SMARCA1P28370 HSPE1P5-201ENST00000561489 272 ntBASIC4.47□□□□□ -1.69
SMARCA1P28370 MIR5685-201ENST00000579080 79 ntBASIC4.47□□□□□ -1.69
SMARCA1P28370 AL157786.1-204ENST00000594870 506 ntTSL 3 BASIC4.47□□□□□ -1.69
SMARCA1P28370 AC245014.2-201ENST00000603689 287 ntBASIC4.47□□□□□ -1.69
SMARCA1P28370 AC246785.4-201ENST00000605374 287 ntBASIC4.47□□□□□ -1.69
SMARCA1P28370 AC011816.2-201ENST00000607089 556 ntBASIC4.47□□□□□ -1.69
SMARCA1P28370 LINC00343-210ENST00000608220 806 ntTSL 5 BASIC4.47□□□□□ -1.69
SMARCA1P28370 AL590099.1-201ENST00000615276 138 ntBASIC4.47□□□□□ -1.69
SMARCA1P28370 AL591424.2-201ENST00000617023 128 ntBASIC4.47□□□□□ -1.69
SMARCA1P28370 DMD-230ENST00000620040 13746 ntAPPRIS ALT2 TSL 5 BASIC4.47□□□□□ -1.69
SMARCA1P28370 FBXO8-205ENST00000615392 1591 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
SMARCA1P28370 CDH10-201ENST00000264463 3438 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
SMARCA1P28370 AC009902.3-201ENST00000606235 2172 ntBASIC4.47□□□□□ -1.69
SMARCA1P28370 MTUS1-216ENST00000519263 4089 ntTSL 2 BASIC4.46□□□□□ -1.69
SMARCA1P28370 AC020637.1-201ENST00000546977 1447 ntTSL 5 BASIC4.46□□□□□ -1.69
SMARCA1P28370 AC011460.1-201ENST00000636268 1834 ntBASIC4.46□□□□□ -1.69
SMARCA1P28370 FMN2-207ENST00000545751 1913 ntTSL 5 BASIC4.46□□□□□ -1.69
SMARCA1P28370 Y_RNA.372-201ENST00000365599 102 ntBASIC4.46□□□□□ -1.7
SMARCA1P28370 AL354864.1-201ENST00000373226 539 ntTSL 2 BASIC4.46□□□□□ -1.7
SMARCA1P28370 RNU6-114P-201ENST00000384704 105 ntBASIC4.46□□□□□ -1.7
SMARCA1P28370 MTCO3P40-201ENST00000392516 676 ntBASIC4.46□□□□□ -1.7
SMARCA1P28370 MRPL42P2-201ENST00000403169 426 ntBASIC4.46□□□□□ -1.7
SMARCA1P28370 AL583834.1-201ENST00000406943 343 ntBASIC4.46□□□□□ -1.7
SMARCA1P28370 SNX10-203ENST00000409367 746 ntTSL 5 BASIC4.46□□□□□ -1.7
SMARCA1P28370 MTND3P17-201ENST00000416968 344 ntBASIC4.46□□□□□ -1.7
SMARCA1P28370 AC069157.1-201ENST00000421749 137 ntBASIC4.46□□□□□ -1.7
SMARCA1P28370 AC019097.1-201ENST00000424783 735 ntBASIC4.46□□□□□ -1.7
SMARCA1P28370 AC112518.1-201ENST00000436089 575 ntTSL 4 BASIC4.46□□□□□ -1.7
SMARCA1P28370 AL359385.1-201ENST00000456509 365 ntBASIC4.46□□□□□ -1.7
SMARCA1P28370 AL136097.2-201ENST00000457003 333 ntTSL 2 BASIC4.46□□□□□ -1.7
SMARCA1P28370 C1GALT1C1L-201ENST00000475092 1172 ntAPPRIS P1 BASIC4.46□□□□□ -1.7
SMARCA1P28370 AC068305.1-201ENST00000497406 726 ntBASIC4.46□□□□□ -1.7
SMARCA1P28370 HMGB1P29-201ENST00000505659 499 ntBASIC4.46□□□□□ -1.7
SMARCA1P28370 LINC01335-201ENST00000507890 389 ntTSL 3 BASIC4.46□□□□□ -1.7
SMARCA1P28370 AC008957.1-201ENST00000510740 478 ntTSL 3 BASIC4.46□□□□□ -1.7
SMARCA1P28370 ARL2BPP6-201ENST00000512757 439 ntBASIC4.46□□□□□ -1.7
SMARCA1P28370 AC026726.1-201ENST00000512859 601 ntBASIC4.46□□□□□ -1.7
SMARCA1P28370 AC026402.1-201ENST00000513642 170 ntBASIC4.46□□□□□ -1.7
SMARCA1P28370 AC017037.2-201ENST00000513850 890 ntBASIC4.46□□□□□ -1.7
SMARCA1P28370 SCARNA14-201ENST00000516903 136 ntBASIC4.46□□□□□ -1.7
SMARCA1P28370 AC018437.2-201ENST00000517369 389 ntTSL 5 BASIC4.46□□□□□ -1.7
SMARCA1P28370 AP000907.2-201ENST00000530827 353 ntBASIC4.46□□□□□ -1.7
SMARCA1P28370 SETP7-201ENST00000552169 453 ntBASIC4.46□□□□□ -1.7
SMARCA1P28370 SETP2-201ENST00000553886 926 ntBASIC4.46□□□□□ -1.7
SMARCA1P28370 AC234778.2-201ENST00000566241 354 ntBASIC4.46□□□□□ -1.7
SMARCA1P28370 AC010547.2-201ENST00000568523 409 ntTSL 5 BASIC4.46□□□□□ -1.7
SMARCA1P28370 AP001180.2-201ENST00000579413 422 ntTSL 5 BASIC4.46□□□□□ -1.7
SMARCA1P28370 AC121334.2-201ENST00000605387 271 ntBASIC4.46□□□□□ -1.7
SMARCA1P28370 AL109618.2-201ENST00000605527 211 ntBASIC4.46□□□□□ -1.7
SMARCA1P28370 AC073534.2-201ENST00000620377 381 ntBASIC4.46□□□□□ -1.7
SMARCA1P28370 AP003171.2-202ENST00000634657 355 ntTSL 5 BASIC4.46□□□□□ -1.7
SMARCA1P28370 LRRC77P-213ENST00000637727 880 ntBASIC4.46□□□□□ -1.7
SMARCA1P28370 SGIP1-206ENST00000435165 3646 ntAPPRIS ALT2 TSL 2 BASIC4.46□□□□□ -1.7
SMARCA1P28370 ELF2P3-201ENST00000445099 1506 ntBASIC4.46□□□□□ -1.7
SMARCA1P28370 MBD5-202ENST00000407073 9512 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
SMARCA1P28370 MGAT4A-204ENST00000414521 3709 ntTSL 2 BASIC4.45□□□□□ -1.7
SMARCA1P28370 AC066616.2-201ENST00000559334 1481 ntBASIC4.45□□□□□ -1.7
SMARCA1P28370 MGA-202ENST00000545763 11413 ntAPPRIS ALT2 TSL 5 BASIC4.45□□□□□ -1.7
SMARCA1P28370 RAP2C-AS1-202ENST00000441399 3473 ntTSL 2 BASIC4.45□□□□□ -1.7
SMARCA1P28370 ZNF479-201ENST00000319636 1811 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
SMARCA1P28370 PKIB-202ENST00000354275 1043 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
SMARCA1P28370 OR8D1-201ENST00000357821 1026 ntAPPRIS P1 BASIC4.45□□□□□ -1.7
SMARCA1P28370 RNU6-282P-201ENST00000365357 103 ntBASIC4.45□□□□□ -1.7
SMARCA1P28370 SNORD115-47-201ENST00000391226 86 ntBASIC4.45□□□□□ -1.7
SMARCA1P28370 RN7SKP159-201ENST00000410657 292 ntBASIC4.45□□□□□ -1.7
SMARCA1P28370 AC127391.1-201ENST00000411737 98 ntBASIC4.45□□□□□ -1.7
SMARCA1P28370 REV3L-IT1-201ENST00000411895 382 ntTSL 5 BASIC4.45□□□□□ -1.7
SMARCA1P28370 MTND4LP10-201ENST00000435146 291 ntBASIC4.45□□□□□ -1.7
SMARCA1P28370 UBE2V1P13-201ENST00000436983 439 ntBASIC4.45□□□□□ -1.7
SMARCA1P28370 KRR1-202ENST00000438169 975 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
SMARCA1P28370 AC114485.1-201ENST00000447916 657 ntTSL 3 BASIC4.45□□□□□ -1.7
SMARCA1P28370 MTCO3P38-201ENST00000468910 766 ntBASIC4.45□□□□□ -1.7
SMARCA1P28370 AC020893.1-201ENST00000502452 580 ntBASIC4.45□□□□□ -1.7
SMARCA1P28370 AC010587.1-201ENST00000505809 469 ntBASIC4.45□□□□□ -1.7
SMARCA1P28370 AC098587.1-201ENST00000508241 540 ntTSL 4 BASIC4.45□□□□□ -1.7
SMARCA1P28370 RNU4ATAC6P-201ENST00000516592 126 ntBASIC4.45□□□□□ -1.7
SMARCA1P28370 RNA5SP309-201ENST00000516670 106 ntBASIC4.45□□□□□ -1.7
SMARCA1P28370 IGKV3OR22-2-201ENST00000517943 313 ntBASIC4.45□□□□□ -1.7
SMARCA1P28370 SPAG11B-207ENST00000528168 481 ntTSL 5 BASIC4.45□□□□□ -1.7
SMARCA1P28370 AHI1-217ENST00000534469 680 ntTSL 3 BASIC4.45□□□□□ -1.7
SMARCA1P28370 AC133480.1-201ENST00000547563 381 ntTSL 3 BASIC4.45□□□□□ -1.7
SMARCA1P28370 AC008056.1-201ENST00000553322 394 ntTSL 3 BASIC4.45□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 99.2 ms