Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 AL390240.1-201ENST00000612950 384 ntBASIC2.85□□□□□ -1.95
HOXC4P09017 ATXN3L-202ENST00000622204 837 ntTSL 5 BASIC2.85□□□□□ -1.95
HOXC4P09017 AC078883.4-201ENST00000623218 367 ntBASIC2.85□□□□□ -1.95
HOXC4P09017 BTG3-AS1-201ENST00000626994 552 ntTSL 4 BASIC2.85□□□□□ -1.95
HOXC4P09017 AP003399.1-201ENST00000637534 361 ntBASIC2.85□□□□□ -1.95
HOXC4P09017 ZNF663P-202ENST00000641770 1131 ntBASIC2.85□□□□□ -1.95
HOXC4P09017 PPHLN1-208ENST00000449194 1583 ntAPPRIS ALT1 TSL 1 (best) BASIC2.85□□□□□ -1.95
HOXC4P09017 CUL3-204ENST00000409777 3147 ntTSL 1 (best) BASIC2.85□□□□□ -1.95
HOXC4P09017 MGAT4C-211ENST00000621808 2582 ntAPPRIS P1 TSL 1 (best) BASIC2.85□□□□□ -1.95
HOXC4P09017 STAU2-201ENST00000355780 4061 ntTSL 1 (best) BASIC2.84□□□□□ -1.95
HOXC4P09017 NUP35-203ENST00000409798 1470 ntTSL 2 BASIC2.84□□□□□ -1.95
HOXC4P09017 SLC25A46-208ENST00000513807 1546 ntTSL 2 BASIC2.84□□□□□ -1.95
HOXC4P09017 snoZ40.1-201ENST00000364540 72 ntBASIC2.84□□□□□ -1.95
HOXC4P09017 SNORA51.4-201ENST00000364993 124 ntBASIC2.84□□□□□ -1.95
HOXC4P09017 RNU6-549P-201ENST00000384433 107 ntBASIC2.84□□□□□ -1.95
HOXC4P09017 MIR16-1-201ENST00000385271 89 ntBASIC2.84□□□□□ -1.95
HOXC4P09017 TRAJ31-201ENST00000390506 57 ntAPPRIS P1 BASIC2.84□□□□□ -1.95
HOXC4P09017 RNU6-821P-201ENST00000390995 107 ntBASIC2.84□□□□□ -1.95
HOXC4P09017 AF130351.1-202ENST00000400562 808 ntAPPRIS P5 TSL 3 BASIC2.84□□□□□ -1.95
HOXC4P09017 AL079342.2-201ENST00000403367 482 ntBASIC2.84□□□□□ -1.95
HOXC4P09017 RNU4-65P-201ENST00000410473 140 ntBASIC2.84□□□□□ -1.95
HOXC4P09017 ELF3-AS1-201ENST00000415582 500 ntTSL 2 BASIC2.84□□□□□ -1.95
HOXC4P09017 RPL7P10-201ENST00000417407 739 ntBASIC2.84□□□□□ -1.95
HOXC4P09017 MTND2P18-201ENST00000419962 1030 ntBASIC2.84□□□□□ -1.95
HOXC4P09017 AC009276.1-201ENST00000422042 253 ntTSL 5 BASIC2.84□□□□□ -1.95
HOXC4P09017 AC011233.1-201ENST00000422812 283 ntBASIC2.84□□□□□ -1.95
HOXC4P09017 HIGD1AP11-201ENST00000438361 280 ntBASIC2.84□□□□□ -1.95
HOXC4P09017 GSAP-208ENST00000441833 737 ntTSL 1 (best) BASIC2.84□□□□□ -1.95
HOXC4P09017 RPS24P13-201ENST00000442520 397 ntBASIC2.84□□□□□ -1.95
HOXC4P09017 AL133217.1-201ENST00000450980 425 ntBASIC2.84□□□□□ -1.95
HOXC4P09017 snoU13.4-201ENST00000458916 104 ntBASIC2.84□□□□□ -1.95
HOXC4P09017 LINC02077-201ENST00000465795 409 ntTSL 3 BASIC2.84□□□□□ -1.95
HOXC4P09017 C1orf185-202ENST00000467127 747 ntAPPRIS ALT2 TSL 3 BASIC2.84□□□□□ -1.95
HOXC4P09017 AC004924.1-201ENST00000480160 781 ntBASIC2.84□□□□□ -1.95
HOXC4P09017 BET1P1-201ENST00000482276 359 ntBASIC2.84□□□□□ -1.95
HOXC4P09017 AC104137.1-201ENST00000503625 385 ntTSL 3 BASIC2.84□□□□□ -1.95
HOXC4P09017 AC010486.3-201ENST00000511602 785 ntBASIC2.84□□□□□ -1.95
HOXC4P09017 Y_RNA.688-201ENST00000516565 95 ntBASIC2.84□□□□□ -1.95
HOXC4P09017 RNU4ATAC10P-201ENST00000516967 122 ntBASIC2.84□□□□□ -1.95
HOXC4P09017 AC104211.1-202ENST00000521307 866 ntTSL 3 BASIC2.84□□□□□ -1.95
HOXC4P09017 FAM60DP-201ENST00000524174 632 ntBASIC2.84□□□□□ -1.95
HOXC4P09017 AP001189.6-201ENST00000528781 831 ntTSL 1 (best) BASIC2.84□□□□□ -1.95
HOXC4P09017 AP000889.1-201ENST00000530968 660 ntBASIC2.84□□□□□ -1.95
HOXC4P09017 AL133370.1-201ENST00000554679 537 ntTSL 3 BASIC2.84□□□□□ -1.95
HOXC4P09017 MIR5708-201ENST00000579723 85 ntBASIC2.84□□□□□ -1.95
HOXC4P09017 LINC01899-203ENST00000584810 337 ntTSL 2 BASIC2.84□□□□□ -1.95
HOXC4P09017 LINC01482-203ENST00000589610 468 ntTSL 3 BASIC2.84□□□□□ -1.95
HOXC4P09017 AC128687.1-201ENST00000605304 619 ntBASIC2.84□□□□□ -1.95
HOXC4P09017 AC080013.6-201ENST00000606185 215 ntBASIC2.84□□□□□ -1.95
HOXC4P09017 TUSC7.1-201ENST00000610969 165 ntBASIC2.84□□□□□ -1.95
HOXC4P09017 AL157770.1-201ENST00000623049 439 ntBASIC2.84□□□□□ -1.95
HOXC4P09017 RBM12B-AS1-201ENST00000623283 653 ntBASIC2.84□□□□□ -1.95
HOXC4P09017 AC098679.5-201ENST00000624394 571 ntBASIC2.84□□□□□ -1.95
HOXC4P09017 AC013470.2-206ENST00000636804 771 ntAPPRIS P5 TSL 5 BASIC2.84□□□□□ -1.95
HOXC4P09017 MARCH6-215ENST00000640713 231 ntTSL 5 BASIC2.84□□□□□ -1.95
HOXC4P09017 EYS-204ENST00000370621 10485 ntAPPRIS ALT2 TSL 1 (best) BASIC2.84□□□□□ -1.96
HOXC4P09017 GPR183-201ENST00000376414 1700 ntAPPRIS P1 TSL 1 (best) BASIC2.84□□□□□ -1.96
HOXC4P09017 MUC7-202ENST00000413702 2540 ntAPPRIS P2 TSL 4 BASIC2.84□□□□□ -1.96
HOXC4P09017 ANKRD36BP1-201ENST00000358576 1779 ntBASIC2.84□□□□□ -1.96
HOXC4P09017 AC103988.1-201ENST00000566382 2177 ntBASIC2.84□□□□□ -1.96
HOXC4P09017 SLC30A6-202ENST00000357055 4758 ntTSL 2 BASIC2.84□□□□□ -1.96
HOXC4P09017 OR10AG1-202ENST00000641071 2807 ntAPPRIS P1 BASIC2.83□□□□□ -1.96
HOXC4P09017 NOC3L-201ENST00000371361 3455 ntAPPRIS P1 TSL 1 (best) BASIC2.83□□□□□ -1.96
HOXC4P09017 FAM184A-202ENST00000352896 3700 ntAPPRIS ALT1 TSL 1 (best) BASIC2.83□□□□□ -1.96
HOXC4P09017 PIK3C2G-201ENST00000266497 4764 ntAPPRIS P1 TSL 1 (best) BASIC2.83□□□□□ -1.96
HOXC4P09017 AKAP9-202ENST00000358100 10309 ntTSL 1 (best) BASIC2.83□□□□□ -1.96
HOXC4P09017 OR1L1-201ENST00000309623 933 ntAPPRIS P1 BASIC2.83□□□□□ -1.96
HOXC4P09017 OR1L1-202ENST00000373686 1083 ntBASIC2.83□□□□□ -1.96
HOXC4P09017 RN7SKP58-201ENST00000411010 305 ntBASIC2.83□□□□□ -1.96
HOXC4P09017 Z75741.2-201ENST00000417272 1167 ntBASIC2.83□□□□□ -1.96
HOXC4P09017 LHFPL3-AS1-203ENST00000417290 950 ntTSL 1 (best) BASIC2.83□□□□□ -1.96
HOXC4P09017 B3GALNT1P1-201ENST00000420569 975 ntBASIC2.83□□□□□ -1.96
HOXC4P09017 TRAPPC2P4-201ENST00000421750 331 ntBASIC2.83□□□□□ -1.96
HOXC4P09017 AC104332.2-201ENST00000429959 156 ntBASIC2.83□□□□□ -1.96
HOXC4P09017 AC105272.1-201ENST00000438604 198 ntBASIC2.83□□□□□ -1.96
HOXC4P09017 AC010157.1-201ENST00000440589 527 ntTSL 4 BASIC2.83□□□□□ -1.96
HOXC4P09017 AC025750.2-201ENST00000442609 450 ntBASIC2.83□□□□□ -1.96
HOXC4P09017 AL357514.1-201ENST00000446322 488 ntTSL 3 BASIC2.83□□□□□ -1.96
HOXC4P09017 SSXP4-201ENST00000451349 245 ntBASIC2.83□□□□□ -1.96
HOXC4P09017 NIPA2P5-201ENST00000452282 464 ntBASIC2.83□□□□□ -1.96
HOXC4P09017 AC104308.1-201ENST00000454621 333 ntBASIC2.83□□□□□ -1.96
HOXC4P09017 AL590639.1-201ENST00000456484 337 ntBASIC2.83□□□□□ -1.96
HOXC4P09017 RN7SL499P-201ENST00000481141 276 ntBASIC2.83□□□□□ -1.96
HOXC4P09017 AC069528.1-202ENST00000482888 637 ntBASIC2.83□□□□□ -1.96
HOXC4P09017 RPS3AP22-201ENST00000488297 769 ntBASIC2.83□□□□□ -1.96
HOXC4P09017 AC082651.2-201ENST00000496833 166 ntBASIC2.83□□□□□ -1.96
HOXC4P09017 ARNTL2-AS1-201ENST00000500498 804 ntTSL 1 (best) BASIC2.83□□□□□ -1.96
HOXC4P09017 VN1R104P-201ENST00000505115 1009 ntBASIC2.83□□□□□ -1.96
HOXC4P09017 AC093752.2-201ENST00000506942 573 ntTSL 5 BASIC2.83□□□□□ -1.96
HOXC4P09017 AC105313.1-201ENST00000509121 353 ntBASIC2.83□□□□□ -1.96
HOXC4P09017 AC004062.1-201ENST00000509926 645 ntBASIC2.83□□□□□ -1.96
HOXC4P09017 MTCO3P28-201ENST00000513351 515 ntBASIC2.83□□□□□ -1.96
HOXC4P09017 AC091826.1-201ENST00000514065 313 ntBASIC2.83□□□□□ -1.96
HOXC4P09017 AC026801.2-201ENST00000515352 425 ntBASIC2.83□□□□□ -1.96
HOXC4P09017 RNU5A-4P-201ENST00000516588 111 ntBASIC2.83□□□□□ -1.96
HOXC4P09017 NCRNA00250-201ENST00000519500 519 ntTSL 4 BASIC2.83□□□□□ -1.96
HOXC4P09017 CTAGE1-202ENST00000525417 1267 ntAPPRIS ALT2 BASIC2.83□□□□□ -1.96
HOXC4P09017 PIH1D2-206ENST00000528775 1025 ntTSL 5 BASIC2.83□□□□□ -1.96
HOXC4P09017 AC130415.1-201ENST00000547569 1010 ntTSL 4 BASIC2.83□□□□□ -1.96
HOXC4P09017 TIMM9-209ENST00000556367 572 ntTSL 2 BASIC2.83□□□□□ -1.96
Retrieved 100 of 98,524 protein–RNA pairs in 128.4 ms