Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 ANKRD36BP2-206ENST00000575193 1245 ntBASIC3.13□□□□□ -1.91
HOXD4P09016 AP001021.1-201ENST00000577704 244 ntTSL 3 BASIC3.13□□□□□ -1.91
HOXD4P09016 AL451064.1-201ENST00000607718 471 ntBASIC3.13□□□□□ -1.91
HOXD4P09016 AL356266.1-201ENST00000623311 483 ntBASIC3.13□□□□□ -1.91
HOXD4P09016 UBE2E2-207ENST00000628311 267 ntTSL 5 BASIC3.13□□□□□ -1.91
HOXD4P09016 AC010976.1-210ENST00000630740 1005 ntTSL 5 BASIC3.13□□□□□ -1.91
HOXD4P09016 AC127502.3-201ENST00000636170 1206 ntBASIC3.13□□□□□ -1.91
HOXD4P09016 U6.101-201ENST00000637707 76 ntBASIC3.13□□□□□ -1.91
HOXD4P09016 ZNF483-201ENST00000309235 3655 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
HOXD4P09016 SMCO3-201ENST00000316048 2104 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
HOXD4P09016 LATS1-201ENST00000253339 4256 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
HOXD4P09016 CEP83-202ENST00000397807 2737 ntTSL 5 BASIC3.13□□□□□ -1.91
HOXD4P09016 AL079343.1-201ENST00000572358 1771 ntBASIC3.12□□□□□ -1.91
HOXD4P09016 OR4G11P-202ENST00000642116 1414 ntBASIC3.12□□□□□ -1.91
HOXD4P09016 DMD-201ENST00000288447 3856 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
HOXD4P09016 GPR18-203ENST00000397473 1660 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
HOXD4P09016 OR52E6-201ENST00000329322 970 ntAPPRIS P1 BASIC3.12□□□□□ -1.91
HOXD4P09016 AL672167.1-206ENST00000356293 943 ntBASIC3.12□□□□□ -1.91
HOXD4P09016 RNU4-35P-201ENST00000362588 141 ntBASIC3.12□□□□□ -1.91
HOXD4P09016 Y_RNA.436-201ENST00000384097 102 ntBASIC3.12□□□□□ -1.91
HOXD4P09016 SNORA51.6-201ENST00000384151 125 ntBASIC3.12□□□□□ -1.91
HOXD4P09016 RNU6-339P-201ENST00000384310 107 ntBASIC3.12□□□□□ -1.91
HOXD4P09016 MIR128-1-201ENST00000384921 82 ntBASIC3.12□□□□□ -1.91
HOXD4P09016 AC016769.3-201ENST00000396562 315 ntBASIC3.12□□□□□ -1.91
HOXD4P09016 RPL31P1-201ENST00000398116 372 ntBASIC3.12□□□□□ -1.91
HOXD4P09016 RNA5SP56-201ENST00000410277 118 ntBASIC3.12□□□□□ -1.91
HOXD4P09016 AC009505.1-201ENST00000413151 424 ntTSL 2 BASIC3.12□□□□□ -1.91
HOXD4P09016 AL355989.1-202ENST00000419406 408 ntTSL 3 BASIC3.12□□□□□ -1.91
HOXD4P09016 AL513174.1-201ENST00000423182 629 ntBASIC3.12□□□□□ -1.91
HOXD4P09016 GLRXP1-201ENST00000423261 334 ntBASIC3.12□□□□□ -1.91
HOXD4P09016 ZYG11AP1-201ENST00000430329 837 ntBASIC3.12□□□□□ -1.91
HOXD4P09016 AC020594.1-201ENST00000437680 338 ntTSL 3 BASIC3.12□□□□□ -1.91
HOXD4P09016 AL117351.1-201ENST00000438864 766 ntBASIC3.12□□□□□ -1.91
HOXD4P09016 FAR2P1-203ENST00000440931 187 ntTSL 2 BASIC3.12□□□□□ -1.91
HOXD4P09016 LINC01004-201ENST00000445184 686 ntTSL 5 BASIC3.12□□□□□ -1.91
HOXD4P09016 NEGR1-IT1-201ENST00000453121 534 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
HOXD4P09016 KATNBL1P6-201ENST00000453433 915 ntBASIC3.12□□□□□ -1.91
HOXD4P09016 RPL30P9-201ENST00000465586 330 ntBASIC3.12□□□□□ -1.91
HOXD4P09016 AC109486.1-201ENST00000486833 374 ntBASIC3.12□□□□□ -1.91
HOXD4P09016 PDCD10-214ENST00000487947 716 ntTSL 5 BASIC3.12□□□□□ -1.91
HOXD4P09016 AC008243.1-202ENST00000506527 481 ntTSL 5 BASIC3.12□□□□□ -1.91
HOXD4P09016 AC026412.2-201ENST00000512270 1075 ntBASIC3.12□□□□□ -1.91
HOXD4P09016 LINC02112-202ENST00000512976 464 ntTSL 3 BASIC3.12□□□□□ -1.91
HOXD4P09016 SNORA70.18-201ENST00000516696 98 ntBASIC3.12□□□□□ -1.91
HOXD4P09016 AC104986.1-201ENST00000517978 436 ntBASIC3.12□□□□□ -1.91
HOXD4P09016 AC103957.1-202ENST00000519814 735 ntTSL 3 BASIC3.12□□□□□ -1.91
HOXD4P09016 AC060788.1-201ENST00000521318 469 ntBASIC3.12□□□□□ -1.91
HOXD4P09016 AC087276.1-201ENST00000529659 480 ntBASIC3.12□□□□□ -1.91
HOXD4P09016 AC123905.1-201ENST00000552098 541 ntTSL 4 BASIC3.12□□□□□ -1.91
HOXD4P09016 AL358335.2-201ENST00000555693 487 ntTSL 3 BASIC3.12□□□□□ -1.91
HOXD4P09016 AC093515.1-201ENST00000567103 445 ntTSL 5 BASIC3.12□□□□□ -1.91
HOXD4P09016 MIR4637-201ENST00000582405 84 ntBASIC3.12□□□□□ -1.91
HOXD4P09016 AL157938.2-201ENST00000587264 894 ntTSL 5 BASIC3.12□□□□□ -1.91
HOXD4P09016 AC011509.1-201ENST00000589512 164 ntTSL 3 BASIC3.12□□□□□ -1.91
HOXD4P09016 AL669831.4-202ENST00000590817 238 ntBASIC3.12□□□□□ -1.91
HOXD4P09016 LINC01928-201ENST00000591029 504 ntTSL 3 BASIC3.12□□□□□ -1.91
HOXD4P09016 RNASEH2B-AS1-202ENST00000593369 648 ntTSL 5 BASIC3.12□□□□□ -1.91
HOXD4P09016 MTCYBP22-201ENST00000603788 447 ntBASIC3.12□□□□□ -1.91
HOXD4P09016 AC106028.5-201ENST00000610332 395 ntBASIC3.12□□□□□ -1.91
HOXD4P09016 MIR7844-201ENST00000616161 122 ntBASIC3.12□□□□□ -1.91
HOXD4P09016 AL356596.1-201ENST00000624230 379 ntBASIC3.12□□□□□ -1.91
HOXD4P09016 LINC02246-205ENST00000627623 417 ntTSL 5 BASIC3.12□□□□□ -1.91
HOXD4P09016 AL365440.2-201ENST00000419738 2597 ntTSL 2 BASIC3.12□□□□□ -1.91
HOXD4P09016 RTKN2-201ENST00000315289 2383 ntTSL 2 BASIC3.12□□□□□ -1.91
HOXD4P09016 CASC1-203ENST00000395987 2363 ntAPPRIS P3 TSL 1 (best) BASIC3.12□□□□□ -1.91
HOXD4P09016 AL672296.1-201ENST00000427780 2158 ntBASIC3.12□□□□□ -1.91
HOXD4P09016 KCNIP4-207ENST00000509207 1301 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
HOXD4P09016 PHTF2-202ENST00000275575 4541 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
HOXD4P09016 SYT14-204ENST00000472886 2966 ntAPPRIS P3 TSL 1 (best) BASIC3.12□□□□□ -1.91
HOXD4P09016 Z83843.1-201ENST00000604070 3685 ntBASIC3.12□□□□□ -1.91
HOXD4P09016 APAF1-208ENST00000549007 3492 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
HOXD4P09016 AP002907.1-201ENST00000606361 1430 ntBASIC3.11□□□□□ -1.91
HOXD4P09016 ZNF415-207ENST00000595193 2479 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
HOXD4P09016 Y_RNA.201-201ENST00000364052 96 ntBASIC3.11□□□□□ -1.91
HOXD4P09016 RNU6-723P-201ENST00000383973 107 ntBASIC3.11□□□□□ -1.91
HOXD4P09016 SNORD17-201ENST00000390930 237 ntBASIC3.11□□□□□ -1.91
HOXD4P09016 BPIFC-202ENST00000397450 458 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
HOXD4P09016 RN7SKP53-201ENST00000411337 315 ntBASIC3.11□□□□□ -1.91
HOXD4P09016 AL158834.1-201ENST00000419441 466 ntTSL 5 BASIC3.11□□□□□ -1.91
HOXD4P09016 RPL7P30-201ENST00000420888 709 ntBASIC3.11□□□□□ -1.91
HOXD4P09016 ATP6V0E1P4-201ENST00000427294 242 ntBASIC3.11□□□□□ -1.91
HOXD4P09016 AC010153.1-201ENST00000432862 727 ntBASIC3.11□□□□□ -1.91
HOXD4P09016 NDUFB1P1-201ENST00000435191 180 ntBASIC3.11□□□□□ -1.91
HOXD4P09016 UBE2FP3-201ENST00000436366 524 ntBASIC3.11□□□□□ -1.91
HOXD4P09016 LARP1BP3-201ENST00000437229 869 ntBASIC3.11□□□□□ -1.91
HOXD4P09016 MTND4P6-201ENST00000438297 472 ntBASIC3.11□□□□□ -1.91
HOXD4P09016 AC006028.1-201ENST00000438379 402 ntBASIC3.11□□□□□ -1.91
HOXD4P09016 MTND1P30-201ENST00000441241 901 ntBASIC3.11□□□□□ -1.91
HOXD4P09016 AL360221.1-201ENST00000445989 335 ntBASIC3.11□□□□□ -1.91
HOXD4P09016 AC026410.2-201ENST00000460281 156 ntBASIC3.11□□□□□ -1.91
HOXD4P09016 RAP1BP2-201ENST00000478270 544 ntBASIC3.11□□□□□ -1.91
HOXD4P09016 AC025518.1-201ENST00000479856 347 ntBASIC3.11□□□□□ -1.91
HOXD4P09016 TMEM251P1-201ENST00000503717 318 ntBASIC3.11□□□□□ -1.91
HOXD4P09016 AC091435.1-201ENST00000505442 584 ntBASIC3.11□□□□□ -1.91
HOXD4P09016 AC110794.1-201ENST00000505816 425 ntBASIC3.11□□□□□ -1.91
HOXD4P09016 LINC02465-201ENST00000507099 532 ntTSL 4 BASIC3.11□□□□□ -1.91
HOXD4P09016 RPL12P22-201ENST00000519073 490 ntBASIC3.11□□□□□ -1.91
HOXD4P09016 AC069228.1-202ENST00000550272 737 ntTSL 3 BASIC3.11□□□□□ -1.91
HOXD4P09016 AL133383.1-201ENST00000569292 901 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
HOXD4P09016 AC092378.2-202ENST00000569328 445 ntTSL 3 BASIC3.11□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 108.4 ms