Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 AF001550.1-201ENST00000572747 573 ntTSL 4 BASIC3.08□□□□□ -1.92
LHX3Q9UBR4 AP005433.1-202ENST00000580845 521 ntTSL 4 BASIC3.08□□□□□ -1.92
LHX3Q9UBR4 COX6CP3-201ENST00000580869 223 ntBASIC3.08□□□□□ -1.92
LHX3Q9UBR4 AL109653.1-201ENST00000603091 248 ntBASIC3.08□□□□□ -1.92
LHX3Q9UBR4 AC013444.2-201ENST00000603317 787 ntBASIC3.08□□□□□ -1.92
LHX3Q9UBR4 AC105148.1-201ENST00000604961 409 ntBASIC3.08□□□□□ -1.92
LHX3Q9UBR4 AL592221.1-201ENST00000605266 382 ntBASIC3.08□□□□□ -1.92
LHX3Q9UBR4 AL158042.1-201ENST00000605338 460 ntBASIC3.08□□□□□ -1.92
LHX3Q9UBR4 AL589740.1-208ENST00000606913 812 ntTSL 5 BASIC3.08□□□□□ -1.92
LHX3Q9UBR4 AL162274.2-201ENST00000614406 332 ntBASIC3.08□□□□□ -1.92
LHX3Q9UBR4 AC068787.1-201ENST00000623908 691 ntBASIC3.08□□□□□ -1.92
LHX3Q9UBR4 FKTN-209ENST00000602661 2576 ntAPPRIS P1 TSL 1 (best) BASIC3.08□□□□□ -1.92
LHX3Q9UBR4 AL513185.3-201ENST00000433335 1300 ntBASIC3.08□□□□□ -1.92
LHX3Q9UBR4 THEMIS-201ENST00000368248 3866 ntAPPRIS P3 TSL 1 (best) BASIC3.08□□□□□ -1.92
LHX3Q9UBR4 HDX-202ENST00000373177 2924 ntAPPRIS P1 TSL 1 (best) BASIC3.07□□□□□ -1.92
LHX3Q9UBR4 CCDC178-213ENST00000583930 3094 ntAPPRIS ALT2 TSL 1 (best) BASIC3.07□□□□□ -1.92
LHX3Q9UBR4 LPP-220ENST00000617246 18220 ntAPPRIS P1 TSL 1 (best) BASIC3.07□□□□□ -1.92
LHX3Q9UBR4 U3.6-201ENST00000363622 211 ntBASIC3.07□□□□□ -1.92
LHX3Q9UBR4 MIR513B-201ENST00000385136 84 ntBASIC3.07□□□□□ -1.92
LHX3Q9UBR4 TRAJ17-201ENST00000390520 63 ntAPPRIS P1 BASIC3.07□□□□□ -1.92
LHX3Q9UBR4 ANAPC10P1-201ENST00000395991 556 ntBASIC3.07□□□□□ -1.92
LHX3Q9UBR4 RPL7P8-201ENST00000411964 730 ntBASIC3.07□□□□□ -1.92
LHX3Q9UBR4 AL359195.1-201ENST00000416657 339 ntTSL 3 BASIC3.07□□□□□ -1.92
LHX3Q9UBR4 BBS9-205ENST00000425508 1252 ntTSL 1 (best) BASIC3.07□□□□□ -1.92
LHX3Q9UBR4 UBE2E2-AS1-202ENST00000430018 499 ntTSL 2 BASIC3.07□□□□□ -1.92
LHX3Q9UBR4 PPEF1-AS1-201ENST00000430641 430 ntTSL 5 BASIC3.07□□□□□ -1.92
LHX3Q9UBR4 AL139118.1-201ENST00000432707 446 ntTSL 3 BASIC3.07□□□□□ -1.92
LHX3Q9UBR4 RPL23AP22-201ENST00000437556 453 ntBASIC3.07□□□□□ -1.92
LHX3Q9UBR4 SNRPEP7-201ENST00000438350 220 ntBASIC3.07□□□□□ -1.92
LHX3Q9UBR4 AC012070.1-201ENST00000442062 427 ntTSL 3 BASIC3.07□□□□□ -1.92
LHX3Q9UBR4 AC234775.1-201ENST00000454247 670 ntBASIC3.07□□□□□ -1.92
LHX3Q9UBR4 AL136097.1-201ENST00000456945 913 ntBASIC3.07□□□□□ -1.92
LHX3Q9UBR4 RPL7P23-201ENST00000493874 747 ntBASIC3.07□□□□□ -1.92
LHX3Q9UBR4 AC020699.1-201ENST00000505161 445 ntBASIC3.07□□□□□ -1.92
LHX3Q9UBR4 LINC01846-201ENST00000505908 651 ntTSL 5 BASIC3.07□□□□□ -1.92
LHX3Q9UBR4 TXNP6-201ENST00000510190 310 ntBASIC3.07□□□□□ -1.92
LHX3Q9UBR4 LEF1-218ENST00000512172 598 ntTSL 2 BASIC3.07□□□□□ -1.92
LHX3Q9UBR4 AC079160.1-201ENST00000513489 739 ntTSL 1 (best) BASIC3.07□□□□□ -1.92
LHX3Q9UBR4 AC009812.2-201ENST00000517657 457 ntBASIC3.07□□□□□ -1.92
LHX3Q9UBR4 LINCR-0001-203ENST00000524047 545 ntTSL 4 BASIC3.07□□□□□ -1.92
LHX3Q9UBR4 AC022509.2-201ENST00000540392 699 ntTSL 3 BASIC3.07□□□□□ -1.92
LHX3Q9UBR4 LINC00944-203ENST00000542248 548 ntTSL 4 BASIC3.07□□□□□ -1.92
LHX3Q9UBR4 ARL1-211ENST00000551828 776 ntTSL 5 BASIC3.07□□□□□ -1.92
LHX3Q9UBR4 VN1R82P-201ENST00000601481 356 ntBASIC3.07□□□□□ -1.92
LHX3Q9UBR4 AC011451.2-201ENST00000604303 598 ntBASIC3.07□□□□□ -1.92
LHX3Q9UBR4 AP000484.1-201ENST00000620067 1252 ntBASIC3.07□□□□□ -1.92
LHX3Q9UBR4 AC002550.2-201ENST00000621246 394 ntBASIC3.07□□□□□ -1.92
LHX3Q9UBR4 ZNF807-201ENST00000328088 1707 ntBASIC3.07□□□□□ -1.92
LHX3Q9UBR4 AC011124.1-201ENST00000521221 1762 ntTSL 2 BASIC3.07□□□□□ -1.92
LHX3Q9UBR4 AL161781.1-201ENST00000354277 403 ntBASIC3.06□□□□□ -1.92
LHX3Q9UBR4 Y_RNA.234-201ENST00000364409 97 ntBASIC3.06□□□□□ -1.92
LHX3Q9UBR4 SNORA71.1-201ENST00000364523 117 ntBASIC3.06□□□□□ -1.92
LHX3Q9UBR4 TAB3-203ENST00000378930 6255 ntAPPRIS P1 TSL 1 (best) BASIC3.06□□□□□ -1.92
LHX3Q9UBR4 MIR483-201ENST00000385070 76 ntBASIC3.06□□□□□ -1.92
LHX3Q9UBR4 MIR591-201ENST00000385290 95 ntBASIC3.06□□□□□ -1.92
LHX3Q9UBR4 PP2D1-202ENST00000389050 2151 ntAPPRIS P1 TSL 5 BASIC3.06□□□□□ -1.92
LHX3Q9UBR4 AL138885.1-201ENST00000405921 675 ntBASIC3.06□□□□□ -1.92
LHX3Q9UBR4 SLC8A1-207ENST00000406785 20987 ntTSL 1 (best) BASIC3.06□□□□□ -1.92
LHX3Q9UBR4 AC109780.2-201ENST00000413467 845 ntBASIC3.06□□□□□ -1.92
LHX3Q9UBR4 GRM7-AS3-202ENST00000417482 454 ntTSL 3 BASIC3.06□□□□□ -1.92
LHX3Q9UBR4 GRM7-AS3-203ENST00000424366 486 ntTSL 3 BASIC3.06□□□□□ -1.92
LHX3Q9UBR4 AC107081.2-201ENST00000425779 802 ntTSL 5 BASIC3.06□□□□□ -1.92
LHX3Q9UBR4 AL022396.1-201ENST00000427011 386 ntTSL 3 BASIC3.06□□□□□ -1.92
LHX3Q9UBR4 ARF4P2-201ENST00000430209 526 ntBASIC3.06□□□□□ -1.92
LHX3Q9UBR4 AC024082.2-201ENST00000434771 238 ntBASIC3.06□□□□□ -1.92
LHX3Q9UBR4 HMGN2P20-201ENST00000437531 273 ntBASIC3.06□□□□□ -1.92
LHX3Q9UBR4 TXNP1-201ENST00000441872 371 ntBASIC3.06□□□□□ -1.92
LHX3Q9UBR4 RPL17P49-201ENST00000443728 411 ntBASIC3.06□□□□□ -1.92
LHX3Q9UBR4 AC010468.1-201ENST00000461022 817 ntBASIC3.06□□□□□ -1.92
LHX3Q9UBR4 S100A11P2-201ENST00000467589 312 ntBASIC3.06□□□□□ -1.92
LHX3Q9UBR4 AC108860.1-201ENST00000484521 383 ntBASIC3.06□□□□□ -1.92
LHX3Q9UBR4 OR2A20P-203ENST00000498397 1268 ntBASIC3.06□□□□□ -1.92
LHX3Q9UBR4 AC104090.1-201ENST00000506341 1171 ntBASIC3.06□□□□□ -1.92
LHX3Q9UBR4 CSN1S1-204ENST00000507772 895 ntAPPRIS ALT2 TSL 5 BASIC3.06□□□□□ -1.92
LHX3Q9UBR4 AC093730.1-201ENST00000508825 448 ntTSL 3 BASIC3.06□□□□□ -1.92
LHX3Q9UBR4 LINC02496-201ENST00000509559 584 ntTSL 3 BASIC3.06□□□□□ -1.92
LHX3Q9UBR4 AC093281.2-201ENST00000510153 597 ntBASIC3.06□□□□□ -1.92
LHX3Q9UBR4 AC092673.1-201ENST00000510203 428 ntTSL 3 BASIC3.06□□□□□ -1.92
LHX3Q9UBR4 AC022483.1-201ENST00000514020 567 ntBASIC3.06□□□□□ -1.92
LHX3Q9UBR4 AC110760.3-202ENST00000515177 371 ntBASIC3.06□□□□□ -1.92
LHX3Q9UBR4 RNU6-714P-201ENST00000516963 103 ntBASIC3.06□□□□□ -1.92
LHX3Q9UBR4 AP002404.1-201ENST00000532005 451 ntBASIC3.06□□□□□ -1.92
LHX3Q9UBR4 MTCO2P15-201ENST00000532655 656 ntBASIC3.06□□□□□ -1.92
LHX3Q9UBR4 AC092745.2-201ENST00000537764 620 ntTSL 3 BASIC3.06□□□□□ -1.92
LHX3Q9UBR4 AL356022.1-201ENST00000557465 483 ntTSL 5 BASIC3.06□□□□□ -1.92
LHX3Q9UBR4 AC113146.1-202ENST00000560259 433 ntTSL 5 BASIC3.06□□□□□ -1.92
LHX3Q9UBR4 AC012170.2-201ENST00000560380 667 ntTSL 3 BASIC3.06□□□□□ -1.92
LHX3Q9UBR4 AL035425.3-201ENST00000564206 4996 ntBASIC3.06□□□□□ -1.92
LHX3Q9UBR4 AC009812.4-201ENST00000569134 1805 ntBASIC3.06□□□□□ -1.92
LHX3Q9UBR4 AC012186.2-201ENST00000569353 321 ntTSL 3 BASIC3.06□□□□□ -1.92
LHX3Q9UBR4 MIR4474-201ENST00000579189 78 ntBASIC3.06□□□□□ -1.92
LHX3Q9UBR4 AC044873.1-201ENST00000580487 399 ntTSL 3 BASIC3.06□□□□□ -1.92
LHX3Q9UBR4 AC016866.2-201ENST00000585251 502 ntTSL 2 BASIC3.06□□□□□ -1.92
LHX3Q9UBR4 AL353997.4-201ENST00000586196 166 ntBASIC3.06□□□□□ -1.92
LHX3Q9UBR4 AC005000.2-201ENST00000605468 310 ntBASIC3.06□□□□□ -1.92
LHX3Q9UBR4 AC112220.3-201ENST00000605502 502 ntBASIC3.06□□□□□ -1.92
LHX3Q9UBR4 AF230666.1-202ENST00000608375 870 ntTSL 5 BASIC3.06□□□□□ -1.92
LHX3Q9UBR4 AP002826.1-201ENST00000608835 315 ntBASIC3.06□□□□□ -1.92
LHX3Q9UBR4 RASSF8-215ENST00000611440 852 ntTSL 5 BASIC3.06□□□□□ -1.92
LHX3Q9UBR4 NPPA-AS1_3.1-201ENST00000617059 108 ntBASIC3.06□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 100.3 ms