Protein–RNA interactions for Protein: Q9UBP4

DKK3, Dickkopf-related protein 3, humanhuman

Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DKK3Q9UBP4 ADAM5-201ENST00000359790 1663 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
DKK3Q9UBP4 GABPAP-201ENST00000419271 1356 ntBASIC4.25□□□□□ -1.73
DKK3Q9UBP4 AKAP6-201ENST00000280979 15006 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
DKK3Q9UBP4 STEAP4-202ENST00000380079 9988 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
DKK3Q9UBP4 CLCA2-201ENST00000370565 4025 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
DKK3Q9UBP4 POLR2B-201ENST00000314595 3748 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
DKK3Q9UBP4 VEZT-201ENST00000261219 3435 ntTSL 5 BASIC4.24□□□□□ -1.73
DKK3Q9UBP4 MBNL1-218ENST00000485910 4257 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
DKK3Q9UBP4 OR5AK2-201ENST00000326855 996 ntAPPRIS P1 BASIC4.24□□□□□ -1.73
DKK3Q9UBP4 PMCH-201ENST00000329406 766 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
DKK3Q9UBP4 RNU6-853P-201ENST00000364306 107 ntBASIC4.24□□□□□ -1.73
DKK3Q9UBP4 RNU6-534P-201ENST00000364877 106 ntBASIC4.24□□□□□ -1.73
DKK3Q9UBP4 Y_RNA.481-201ENST00000384373 102 ntBASIC4.24□□□□□ -1.73
DKK3Q9UBP4 AL022722.2-201ENST00000402519 180 ntBASIC4.24□□□□□ -1.73
DKK3Q9UBP4 AC078974.1-201ENST00000411597 223 ntBASIC4.24□□□□□ -1.73
DKK3Q9UBP4 LINC00894-201ENST00000413076 403 ntTSL 3 BASIC4.24□□□□□ -1.73
DKK3Q9UBP4 DIAPH3-AS1-201ENST00000422052 428 ntTSL 3 BASIC4.24□□□□□ -1.73
DKK3Q9UBP4 MTCO1P20-201ENST00000425366 358 ntBASIC4.24□□□□□ -1.73
DKK3Q9UBP4 RPL31P35-201ENST00000431058 377 ntBASIC4.24□□□□□ -1.73
DKK3Q9UBP4 USP12PX-201ENST00000432383 1057 ntBASIC4.24□□□□□ -1.73
DKK3Q9UBP4 RPL23AP46-201ENST00000438548 490 ntBASIC4.24□□□□□ -1.73
DKK3Q9UBP4 AL591721.1-201ENST00000439849 751 ntTSL 3 BASIC4.24□□□□□ -1.73
DKK3Q9UBP4 SNRPEP8-201ENST00000442866 260 ntBASIC4.24□□□□□ -1.73
DKK3Q9UBP4 RPL23AP20-201ENST00000447965 421 ntBASIC4.24□□□□□ -1.73
DKK3Q9UBP4 AL358232.1-201ENST00000448030 501 ntBASIC4.24□□□□□ -1.73
DKK3Q9UBP4 HMGB1P15-201ENST00000453854 435 ntBASIC4.24□□□□□ -1.73
DKK3Q9UBP4 AC055764.1-201ENST00000454526 473 ntTSL 3 BASIC4.24□□□□□ -1.73
DKK3Q9UBP4 MTND1P12-201ENST00000455231 147 ntBASIC4.24□□□□□ -1.73
DKK3Q9UBP4 MTCYBP18-201ENST00000501056 747 ntBASIC4.24□□□□□ -1.73
DKK3Q9UBP4 AC008629.1-202ENST00000504820 525 ntTSL 4 BASIC4.24□□□□□ -1.73
DKK3Q9UBP4 AC139718.1-201ENST00000508010 300 ntTSL 5 BASIC4.24□□□□□ -1.73
DKK3Q9UBP4 AC113346.1-201ENST00000510150 287 ntTSL 3 BASIC4.24□□□□□ -1.73
DKK3Q9UBP4 AC008957.1-201ENST00000510740 478 ntTSL 3 BASIC4.24□□□□□ -1.73
DKK3Q9UBP4 AC105914.1-201ENST00000511798 226 ntBASIC4.24□□□□□ -1.73
DKK3Q9UBP4 AC114781.4-201ENST00000513707 639 ntBASIC4.24□□□□□ -1.73
DKK3Q9UBP4 AC008694.2-201ENST00000517591 306 ntBASIC4.24□□□□□ -1.73
DKK3Q9UBP4 AP003469.3-201ENST00000518090 473 ntTSL 3 BASIC4.24□□□□□ -1.73
DKK3Q9UBP4 AC100770.1-201ENST00000532310 322 ntBASIC4.24□□□□□ -1.73
DKK3Q9UBP4 AP004242.1-201ENST00000533701 349 ntBASIC4.24□□□□□ -1.73
DKK3Q9UBP4 AL163973.3-201ENST00000547093 430 ntTSL 3 BASIC4.24□□□□□ -1.73
DKK3Q9UBP4 AL512360.1-201ENST00000555346 234 ntBASIC4.24□□□□□ -1.73
DKK3Q9UBP4 AC124068.1-201ENST00000563131 678 ntBASIC4.24□□□□□ -1.73
DKK3Q9UBP4 AC007952.9-201ENST00000584365 191 ntTSL 3 BASIC4.24□□□□□ -1.73
DKK3Q9UBP4 AL391646.1-201ENST00000603860 190 ntBASIC4.24□□□□□ -1.73
DKK3Q9UBP4 HMGB1P50-201ENST00000605814 607 ntBASIC4.24□□□□□ -1.73
DKK3Q9UBP4 CEP164P1-207ENST00000608660 504 ntTSL 5 BASIC4.24□□□□□ -1.73
DKK3Q9UBP4 AL161734.1-201ENST00000609720 557 ntBASIC4.24□□□□□ -1.73
DKK3Q9UBP4 AL354696.2-202ENST00000620300 613 ntTSL 2 BASIC4.24□□□□□ -1.73
DKK3Q9UBP4 MIR6075-201ENST00000620782 95 ntBASIC4.24□□□□□ -1.73
DKK3Q9UBP4 AL732618.1-201ENST00000623251 301 ntBASIC4.24□□□□□ -1.73
DKK3Q9UBP4 AP003122.6-201ENST00000623831 495 ntBASIC4.24□□□□□ -1.73
DKK3Q9UBP4 AC099654.5-201ENST00000636479 350 ntBASIC4.24□□□□□ -1.73
DKK3Q9UBP4 EFCAB5-213ENST00000638539 168 ntTSL 5 BASIC4.24□□□□□ -1.73
DKK3Q9UBP4 SKP1-209ENST00000522552 1683 ntAPPRIS ALT1 TSL 1 (best) BASIC4.24□□□□□ -1.73
DKK3Q9UBP4 PREPL-206ENST00000409936 5212 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
DKK3Q9UBP4 ZPLD1-202ENST00000466937 1531 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
DKK3Q9UBP4 HSFY1-202ENST00000309834 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC4.23□□□□□ -1.73
DKK3Q9UBP4 HSFY2-202ENST00000344884 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC4.23□□□□□ -1.73
DKK3Q9UBP4 RNU6-181P-201ENST00000363225 107 ntBASIC4.23□□□□□ -1.73
DKK3Q9UBP4 RNU6-1090P-201ENST00000364065 94 ntBASIC4.23□□□□□ -1.73
DKK3Q9UBP4 MIR554-201ENST00000384874 96 ntBASIC4.23□□□□□ -1.73
DKK3Q9UBP4 MT-TL1-201ENST00000386347 75 ntBASIC4.23□□□□□ -1.73
DKK3Q9UBP4 PIGP-205ENST00000399103 656 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
DKK3Q9UBP4 AL359704.1-201ENST00000411586 781 ntBASIC4.23□□□□□ -1.73
DKK3Q9UBP4 RPL31P2-201ENST00000413849 377 ntBASIC4.23□□□□□ -1.73
DKK3Q9UBP4 AL391704.1-203ENST00000414903 462 ntTSL 3 BASIC4.23□□□□□ -1.73
DKK3Q9UBP4 NUP35P2-201ENST00000416748 943 ntBASIC4.23□□□□□ -1.73
DKK3Q9UBP4 USP9YP27-201ENST00000418455 438 ntBASIC4.23□□□□□ -1.73
DKK3Q9UBP4 AL731563.2-201ENST00000431293 291 ntTSL 5 BASIC4.23□□□□□ -1.73
DKK3Q9UBP4 AC010132.1-201ENST00000433315 561 ntTSL 4 BASIC4.23□□□□□ -1.73
DKK3Q9UBP4 SDCBPP1-201ENST00000440192 890 ntBASIC4.23□□□□□ -1.73
DKK3Q9UBP4 AL356124.2-201ENST00000442449 391 ntTSL 5 BASIC4.23□□□□□ -1.73
DKK3Q9UBP4 HMGN2P21-201ENST00000447764 270 ntBASIC4.23□□□□□ -1.73
DKK3Q9UBP4 AL391427.1-201ENST00000451575 425 ntTSL 3 BASIC4.23□□□□□ -1.73
DKK3Q9UBP4 AC069549.1-201ENST00000451584 499 ntTSL 3 BASIC4.23□□□□□ -1.73
DKK3Q9UBP4 LINC01546-201ENST00000457435 674 ntTSL 2 BASIC4.23□□□□□ -1.73
DKK3Q9UBP4 RPS20P21-201ENST00000466859 343 ntBASIC4.23□□□□□ -1.73
DKK3Q9UBP4 RPS29P19-201ENST00000479709 171 ntBASIC4.23□□□□□ -1.73
DKK3Q9UBP4 RPS29P25-201ENST00000481709 171 ntBASIC4.23□□□□□ -1.73
DKK3Q9UBP4 RPS26P15-201ENST00000488067 348 ntBASIC4.23□□□□□ -1.73
DKK3Q9UBP4 AP001086.1-201ENST00000494882 321 ntBASIC4.23□□□□□ -1.73
DKK3Q9UBP4 Vault.3-201ENST00000516676 95 ntBASIC4.23□□□□□ -1.73
DKK3Q9UBP4 RNU6-445P-201ENST00000516949 107 ntBASIC4.23□□□□□ -1.73
DKK3Q9UBP4 AC140847.1-201ENST00000538025 534 ntTSL 4 BASIC4.23□□□□□ -1.73
DKK3Q9UBP4 AC010183.2-202ENST00000546791 382 ntTSL 3 BASIC4.23□□□□□ -1.73
DKK3Q9UBP4 AL355096.1-201ENST00000553561 447 ntTSL 3 BASIC4.23□□□□□ -1.73
DKK3Q9UBP4 AC099489.2-201ENST00000574976 260 ntBASIC4.23□□□□□ -1.73
DKK3Q9UBP4 AC037487.2-201ENST00000581796 537 ntTSL 3 BASIC4.23□□□□□ -1.73
DKK3Q9UBP4 RN7SL600P-201ENST00000581811 299 ntBASIC4.23□□□□□ -1.73
DKK3Q9UBP4 MIR3158-1-201ENST00000583596 81 ntBASIC4.23□□□□□ -1.73
DKK3Q9UBP4 AC015908.2-202ENST00000585243 756 ntTSL 3 BASIC4.23□□□□□ -1.73
DKK3Q9UBP4 AC006130.2-201ENST00000586202 326 ntBASIC4.23□□□□□ -1.73
DKK3Q9UBP4 LINC01905-206ENST00000593180 524 ntTSL 2 BASIC4.23□□□□□ -1.73
DKK3Q9UBP4 AC012507.3-201ENST00000603556 477 ntBASIC4.23□□□□□ -1.73
DKK3Q9UBP4 AP001330.5-201ENST00000607176 411 ntBASIC4.23□□□□□ -1.73
DKK3Q9UBP4 CERS6-AS1-209ENST00000609766 642 ntTSL 5 BASIC4.23□□□□□ -1.73
DKK3Q9UBP4 AL391261.4-201ENST00000616012 481 ntBASIC4.23□□□□□ -1.73
DKK3Q9UBP4 AL596245.1-201ENST00000618994 362 ntBASIC4.23□□□□□ -1.73
DKK3Q9UBP4 AP005264.7-201ENST00000625003 745 ntBASIC4.23□□□□□ -1.73
DKK3Q9UBP4 OR6A2-202ENST00000641196 4295 ntAPPRIS P1 BASIC4.23□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 130.3 ms