Protein–RNA interactions for Protein: Q9P1Q0

VPS54, Vacuolar protein sorting-associated protein 54, humanhuman

Predictions only

Length 977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54Q9P1Q0 TIMM9P2-201ENST00000419324 266 ntBASIC3.28□□□□□ -1.88
VPS54Q9P1Q0 AL451127.1-201ENST00000422909 624 ntTSL 3 BASIC3.28□□□□□ -1.88
VPS54Q9P1Q0 AC007742.1-201ENST00000425789 329 ntBASIC3.28□□□□□ -1.88
VPS54Q9P1Q0 AC244505.4-201ENST00000434905 287 ntBASIC3.28□□□□□ -1.88
VPS54Q9P1Q0 ELOCP26-201ENST00000436067 329 ntBASIC3.28□□□□□ -1.88
VPS54Q9P1Q0 RPS29P6-201ENST00000438196 145 ntBASIC3.28□□□□□ -1.88
VPS54Q9P1Q0 SSXP5-201ENST00000443473 287 ntBASIC3.28□□□□□ -1.88
VPS54Q9P1Q0 AL513412.1-201ENST00000445708 553 ntTSL 4 BASIC3.28□□□□□ -1.88
VPS54Q9P1Q0 NUTM2A-AS1-209ENST00000447424 571 ntTSL 3 BASIC3.28□□□□□ -1.88
VPS54Q9P1Q0 RNU1-61P-201ENST00000516107 151 ntBASIC3.28□□□□□ -1.88
VPS54Q9P1Q0 SNORA31.8-201ENST00000516327 108 ntBASIC3.28□□□□□ -1.88
VPS54Q9P1Q0 CCDC7-207ENST00000535327 700 ntAPPRIS ALT2 TSL 1 (best) BASIC3.28□□□□□ -1.88
VPS54Q9P1Q0 AL160237.1-201ENST00000554526 572 ntTSL 4 BASIC3.28□□□□□ -1.88
VPS54Q9P1Q0 AC009117.2-201ENST00000565374 504 ntTSL 3 BASIC3.28□□□□□ -1.88
VPS54Q9P1Q0 FAM60BP-201ENST00000578364 658 ntBASIC3.28□□□□□ -1.88
VPS54Q9P1Q0 THRA1/BTR-203ENST00000604191 571 ntTSL 4 BASIC3.28□□□□□ -1.88
VPS54Q9P1Q0 AC093732.2-201ENST00000607950 274 ntBASIC3.28□□□□□ -1.88
VPS54Q9P1Q0 AC025588.4-201ENST00000615802 908 ntBASIC3.28□□□□□ -1.88
VPS54Q9P1Q0 SEC23A-215ENST00000625395 261 ntTSL 5 BASIC3.28□□□□□ -1.88
VPS54Q9P1Q0 C20orf24-208ENST00000639924 351 ntTSL 5 BASIC3.28□□□□□ -1.88
VPS54Q9P1Q0 ATP2B1-201ENST00000261173 6777 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
VPS54Q9P1Q0 THNSL1-201ENST00000376356 3691 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.89
VPS54Q9P1Q0 GABRG2-229ENST00000641017 3628 ntBASIC3.27□□□□□ -1.89
VPS54Q9P1Q0 AC096644.4-201ENST00000563417 2912 ntBASIC3.27□□□□□ -1.89
VPS54Q9P1Q0 LMNTD1-204ENST00000458174 1677 ntAPPRIS ALT2 TSL 2 BASIC3.27□□□□□ -1.89
VPS54Q9P1Q0 AC002546.1-201ENST00000588041 2504 ntBASIC3.27□□□□□ -1.89
VPS54Q9P1Q0 ZMYM1-210ENST00000611874 4466 ntAPPRIS P1 TSL 2 BASIC3.27□□□□□ -1.89
VPS54Q9P1Q0 EYS-204ENST00000370621 10485 ntAPPRIS ALT2 TSL 1 (best) BASIC3.27□□□□□ -1.89
VPS54Q9P1Q0 OR5T2-201ENST00000313264 1248 ntAPPRIS P2 BASIC3.27□□□□□ -1.89
VPS54Q9P1Q0 KLRC2-202ENST00000381902 1221 ntAPPRIS P2 TSL 1 (best) BASIC3.27□□□□□ -1.89
VPS54Q9P1Q0 MIR512-1-201ENST00000384913 84 ntBASIC3.27□□□□□ -1.89
VPS54Q9P1Q0 MIR181B1-201ENST00000385240 110 ntBASIC3.27□□□□□ -1.89
VPS54Q9P1Q0 TRAJ31-201ENST00000390506 57 ntAPPRIS P1 BASIC3.27□□□□□ -1.89
VPS54Q9P1Q0 RPL5P18-201ENST00000406671 891 ntBASIC3.27□□□□□ -1.89
VPS54Q9P1Q0 NT5C3A-205ENST00000409467 1032 ntAPPRIS ALT1 TSL 5 BASIC3.27□□□□□ -1.89
VPS54Q9P1Q0 PPP1R1C-203ENST00000409702 1157 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
VPS54Q9P1Q0 YPEL5P1-201ENST00000419731 367 ntBASIC3.27□□□□□ -1.89
VPS54Q9P1Q0 AC019178.2-201ENST00000423595 505 ntBASIC3.27□□□□□ -1.89
VPS54Q9P1Q0 AL731684.2-201ENST00000426839 333 ntTSL 5 BASIC3.27□□□□□ -1.89
VPS54Q9P1Q0 MTND2P5-201ENST00000432656 1006 ntBASIC3.27□□□□□ -1.89
VPS54Q9P1Q0 LINC01683-201ENST00000443479 412 ntTSL 3 BASIC3.27□□□□□ -1.89
VPS54Q9P1Q0 RPL21P134-201ENST00000453468 483 ntBASIC3.27□□□□□ -1.89
VPS54Q9P1Q0 MTND1P16-201ENST00000465177 898 ntBASIC3.27□□□□□ -1.89
VPS54Q9P1Q0 MIR1302-2HG-201ENST00000469289 535 ntTSL 5 BASIC3.27□□□□□ -1.89
VPS54Q9P1Q0 LINC02032-201ENST00000490465 391 ntTSL 2 BASIC3.27□□□□□ -1.89
VPS54Q9P1Q0 SATB1-216ENST00000491519 1000 ntTSL 2 BASIC3.27□□□□□ -1.89
VPS54Q9P1Q0 AC023424.2-201ENST00000493479 777 ntBASIC3.27□□□□□ -1.89
VPS54Q9P1Q0 AC010273.1-201ENST00000504129 946 ntTSL 5 BASIC3.27□□□□□ -1.89
VPS54Q9P1Q0 COX7A2P2-201ENST00000505291 250 ntBASIC3.27□□□□□ -1.89
VPS54Q9P1Q0 LINC01957-201ENST00000506392 751 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
VPS54Q9P1Q0 AC079395.1-201ENST00000510981 262 ntBASIC3.27□□□□□ -1.89
VPS54Q9P1Q0 ZFPM2-AS1-207ENST00000524045 987 ntTSL 3 BASIC3.27□□□□□ -1.89
VPS54Q9P1Q0 AC107016.2-201ENST00000547968 190 ntBASIC3.27□□□□□ -1.89
VPS54Q9P1Q0 AC012100.2-201ENST00000558317 304 ntTSL 5 BASIC3.27□□□□□ -1.89
VPS54Q9P1Q0 AL512347.1-201ENST00000566420 503 ntBASIC3.27□□□□□ -1.89
VPS54Q9P1Q0 OR4K7P-201ENST00000580232 945 ntBASIC3.27□□□□□ -1.89
VPS54Q9P1Q0 AL670729.3-201ENST00000602345 574 ntTSL 4 BASIC3.27□□□□□ -1.89
VPS54Q9P1Q0 AC024153.1-201ENST00000603103 365 ntBASIC3.27□□□□□ -1.89
VPS54Q9P1Q0 AC109809.1-201ENST00000619665 545 ntBASIC3.27□□□□□ -1.89
VPS54Q9P1Q0 AL353748.2-201ENST00000622148 471 ntBASIC3.27□□□□□ -1.89
VPS54Q9P1Q0 AC231657.1-201ENST00000624313 397 ntBASIC3.27□□□□□ -1.89
VPS54Q9P1Q0 SLAIN1-203ENST00000351546 2394 ntTSL 2 BASIC3.27□□□□□ -1.89
VPS54Q9P1Q0 LINC01419-201ENST00000522365 1521 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
VPS54Q9P1Q0 OXR1-205ENST00000442977 2956 ntTSL 2 BASIC3.27□□□□□ -1.89
VPS54Q9P1Q0 MAPK10-362ENST00000641864 4484 ntBASIC3.27□□□□□ -1.89
VPS54Q9P1Q0 AC100800.1-201ENST00000524252 2054 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
VPS54Q9P1Q0 AC092593.1-201ENST00000515413 1815 ntBASIC3.26□□□□□ -1.89
VPS54Q9P1Q0 CNBD1-202ENST00000518476 1594 ntAPPRIS P2 TSL 1 (best) BASIC3.26□□□□□ -1.89
VPS54Q9P1Q0 SPEF2-203ENST00000440995 5964 ntAPPRIS ALT2 TSL 5 BASIC3.26□□□□□ -1.89
VPS54Q9P1Q0 ERBIN-204ENST00000380943 6410 ntAPPRIS P3 TSL 1 (best) BASIC3.26□□□□□ -1.89
VPS54Q9P1Q0 RPL9P7-201ENST00000330965 580 ntBASIC3.26□□□□□ -1.89
VPS54Q9P1Q0 RNU6-851P-201ENST00000384565 107 ntBASIC3.26□□□□□ -1.89
VPS54Q9P1Q0 MIR483-201ENST00000385070 76 ntBASIC3.26□□□□□ -1.89
VPS54Q9P1Q0 AL161909.2-201ENST00000417577 409 ntTSL 5 BASIC3.26□□□□□ -1.89
VPS54Q9P1Q0 LINC01794-201ENST00000420187 549 ntTSL 4 BASIC3.26□□□□□ -1.89
VPS54Q9P1Q0 RPL7P30-201ENST00000420888 709 ntBASIC3.26□□□□□ -1.89
VPS54Q9P1Q0 GRK5-IT1-201ENST00000421206 400 ntTSL 3 BASIC3.26□□□□□ -1.89
VPS54Q9P1Q0 MTND2P9-201ENST00000422293 931 ntBASIC3.26□□□□□ -1.89
VPS54Q9P1Q0 AC012498.1-201ENST00000424037 437 ntBASIC3.26□□□□□ -1.89
VPS54Q9P1Q0 AC069257.1-202ENST00000425275 422 ntTSL 3 BASIC3.26□□□□□ -1.89
VPS54Q9P1Q0 MTCO1P39-201ENST00000426148 480 ntBASIC3.26□□□□□ -1.89
VPS54Q9P1Q0 RPL21P40-201ENST00000428586 483 ntBASIC3.26□□□□□ -1.89
VPS54Q9P1Q0 AL354977.1-201ENST00000438147 679 ntTSL 5 BASIC3.26□□□□□ -1.89
VPS54Q9P1Q0 HSPE1P28-201ENST00000443139 211 ntBASIC3.26□□□□□ -1.89
VPS54Q9P1Q0 AL135938.1-201ENST00000443141 297 ntBASIC3.26□□□□□ -1.89
VPS54Q9P1Q0 RPL17P49-201ENST00000443728 411 ntBASIC3.26□□□□□ -1.89
VPS54Q9P1Q0 RPL23AP31-201ENST00000456160 467 ntBASIC3.26□□□□□ -1.89
VPS54Q9P1Q0 SUMO2P2-201ENST00000456482 255 ntBASIC3.26□□□□□ -1.89
VPS54Q9P1Q0 SIDT1-AS1-201ENST00000462180 465 ntTSL 3 BASIC3.26□□□□□ -1.89
VPS54Q9P1Q0 RPL7P5-201ENST00000471472 736 ntBASIC3.26□□□□□ -1.89
VPS54Q9P1Q0 AP001025.2-201ENST00000490908 477 ntBASIC3.26□□□□□ -1.89
VPS54Q9P1Q0 APOA2-210ENST00000491350 263 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
VPS54Q9P1Q0 AC114981.1-201ENST00000503897 678 ntBASIC3.26□□□□□ -1.89
VPS54Q9P1Q0 AC111000.2-201ENST00000507775 550 ntBASIC3.26□□□□□ -1.89
VPS54Q9P1Q0 AC091906.1-201ENST00000511310 391 ntTSL 2 BASIC3.26□□□□□ -1.89
VPS54Q9P1Q0 AC091826.1-201ENST00000514065 313 ntBASIC3.26□□□□□ -1.89
VPS54Q9P1Q0 SCARNA13-201ENST00000516672 275 ntBASIC3.26□□□□□ -1.89
VPS54Q9P1Q0 AC022861.1-201ENST00000522981 663 ntBASIC3.26□□□□□ -1.89
VPS54Q9P1Q0 HSPA8P13-201ENST00000523715 472 ntBASIC3.26□□□□□ -1.89
VPS54Q9P1Q0 OR4H12P-201ENST00000556269 907 ntBASIC3.26□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 104.2 ms