Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 BCLAF1-207ENST00000527759 4373 ntAPPRIS ALT2 TSL 1 (best) BASIC4.34□□□□□ -1.71
TDP1Q9NUW8 ZNF680P1-201ENST00000436625 1469 ntBASIC4.34□□□□□ -1.71
TDP1Q9NUW8 CPXCR1-202ENST00000373111 1577 ntAPPRIS P1 TSL 2 BASIC4.34□□□□□ -1.71
TDP1Q9NUW8 SYNE2-203ENST00000357395 21555 ntTSL 5 BASIC4.34□□□□□ -1.72
TDP1Q9NUW8 PJA2-202ENST00000361557 4645 ntAPPRIS P1 TSL 2 BASIC4.34□□□□□ -1.72
TDP1Q9NUW8 ARID2-205ENST00000444670 7316 ntTSL 1 (best) BASIC4.34□□□□□ -1.72
TDP1Q9NUW8 MTND5P3-201ENST00000438536 1800 ntBASIC4.33□□□□□ -1.72
TDP1Q9NUW8 EEF1A1P42-201ENST00000613436 1331 ntBASIC4.33□□□□□ -1.72
TDP1Q9NUW8 RNU6-511P-201ENST00000363496 107 ntBASIC4.33□□□□□ -1.72
TDP1Q9NUW8 AL583834.1-201ENST00000406943 343 ntBASIC4.33□□□□□ -1.72
TDP1Q9NUW8 MIR1179-201ENST00000408703 91 ntBASIC4.33□□□□□ -1.72
TDP1Q9NUW8 RN7SKP202-201ENST00000410439 330 ntBASIC4.33□□□□□ -1.72
TDP1Q9NUW8 MRPL50P2-201ENST00000416821 482 ntBASIC4.33□□□□□ -1.72
TDP1Q9NUW8 AL161631.1-201ENST00000417933 486 ntBASIC4.33□□□□□ -1.72
TDP1Q9NUW8 AL137014.1-201ENST00000420490 1226 ntBASIC4.33□□□□□ -1.72
TDP1Q9NUW8 BEND7P1-201ENST00000422058 457 ntBASIC4.33□□□□□ -1.72
TDP1Q9NUW8 AL353612.1-201ENST00000428769 465 ntTSL 3 BASIC4.33□□□□□ -1.72
TDP1Q9NUW8 AL606489.2-201ENST00000433886 234 ntBASIC4.33□□□□□ -1.72
TDP1Q9NUW8 RPL35AP22-201ENST00000436855 335 ntBASIC4.33□□□□□ -1.72
TDP1Q9NUW8 AC011897.1-201ENST00000450715 346 ntTSL 3 BASIC4.33□□□□□ -1.72
TDP1Q9NUW8 AC234775.1-201ENST00000454247 670 ntBASIC4.33□□□□□ -1.72
TDP1Q9NUW8 AL359095.1-201ENST00000457383 635 ntTSL 3 BASIC4.33□□□□□ -1.72
TDP1Q9NUW8 SNORA84-201ENST00000459229 133 ntBASIC4.33□□□□□ -1.72
TDP1Q9NUW8 RN7SL132P-201ENST00000478131 296 ntBASIC4.33□□□□□ -1.72
TDP1Q9NUW8 RN7SL817P-201ENST00000480777 288 ntBASIC4.33□□□□□ -1.72
TDP1Q9NUW8 ANKRD36B-207ENST00000497329 649 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
TDP1Q9NUW8 SLC25A15P5-201ENST00000508033 253 ntBASIC4.33□□□□□ -1.72
TDP1Q9NUW8 LINC02230-201ENST00000511174 301 ntTSL 5 BASIC4.33□□□□□ -1.72
TDP1Q9NUW8 RNU6-358P-201ENST00000516564 75 ntBASIC4.33□□□□□ -1.72
TDP1Q9NUW8 RNU6-64P-201ENST00000517119 105 ntBASIC4.33□□□□□ -1.72
TDP1Q9NUW8 TRAPPC2P2-201ENST00000517589 409 ntBASIC4.33□□□□□ -1.72
TDP1Q9NUW8 DEUP1-203ENST00000527307 767 ntTSL 3 BASIC4.33□□□□□ -1.72
TDP1Q9NUW8 DEFB108D-201ENST00000527787 222 ntBASIC4.33□□□□□ -1.72
TDP1Q9NUW8 OR4R1P-201ENST00000529879 463 ntBASIC4.33□□□□□ -1.72
TDP1Q9NUW8 AC068205.1-204ENST00000532989 481 ntTSL 3 BASIC4.33□□□□□ -1.72
TDP1Q9NUW8 AC011092.2-201ENST00000533659 586 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
TDP1Q9NUW8 AC126177.3-201ENST00000551839 688 ntBASIC4.33□□□□□ -1.72
TDP1Q9NUW8 AC034105.3-201ENST00000565294 442 ntBASIC4.33□□□□□ -1.72
TDP1Q9NUW8 ZFP30-209ENST00000589018 444 ntTSL 5 BASIC4.33□□□□□ -1.72
TDP1Q9NUW8 AC007001.1-201ENST00000590912 670 ntTSL 5 BASIC4.33□□□□□ -1.72
TDP1Q9NUW8 SNORD91B-202ENST00000608459 222 ntBASIC4.33□□□□□ -1.72
TDP1Q9NUW8 AL356130.2-201ENST00000612554 404 ntTSL 3 BASIC4.33□□□□□ -1.72
TDP1Q9NUW8 AC008162.2-201ENST00000613352 291 ntAPPRIS P1 TSL 3 BASIC4.33□□□□□ -1.72
TDP1Q9NUW8 AC092794.2-201ENST00000620933 563 ntBASIC4.33□□□□□ -1.72
TDP1Q9NUW8 AC019278.1-201ENST00000623516 479 ntBASIC4.33□□□□□ -1.72
TDP1Q9NUW8 AC008785.1-201ENST00000624475 456 ntBASIC4.33□□□□□ -1.72
TDP1Q9NUW8 FER-210ENST00000628534 558 ntTSL 5 BASIC4.33□□□□□ -1.72
TDP1Q9NUW8 TUG1-201ENST00000519077 5673 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
TDP1Q9NUW8 PRLR-217ENST00000618457 11688 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
TDP1Q9NUW8 MECOM-219ENST00000628990 4835 ntAPPRIS P3 TSL 1 (best) BASIC4.33□□□□□ -1.72
TDP1Q9NUW8 ADGRL2-205ENST00000370717 5873 ntAPPRIS ALT2 TSL 5 BASIC4.33□□□□□ -1.72
TDP1Q9NUW8 ADGRL2-201ENST00000319517 5479 ntAPPRIS P2 TSL 1 (best) BASIC4.33□□□□□ -1.72
TDP1Q9NUW8 ADGRG4-201ENST00000370652 9820 ntAPPRIS P2 TSL 5 BASIC4.33□□□□□ -1.72
TDP1Q9NUW8 CD84-206ENST00000368054 8181 ntAPPRIS P3 TSL 1 (best) BASIC4.33□□□□□ -1.72
TDP1Q9NUW8 OR56A1-203ENST00000641900 8448 ntAPPRIS P1 BASIC4.33□□□□□ -1.72
TDP1Q9NUW8 ZNF254-202ENST00000357002 3967 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
TDP1Q9NUW8 AC021355.1-202ENST00000519996 1633 ntTSL 2 BASIC4.32□□□□□ -1.72
TDP1Q9NUW8 RAPGEF6-201ENST00000296859 5618 ntAPPRIS ALT2 TSL 1 (best) BASIC4.32□□□□□ -1.72
TDP1Q9NUW8 CASC19-280ENST00000642102 1351 ntBASIC4.32□□□□□ -1.72
TDP1Q9NUW8 CDH9-201ENST00000231021 3079 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
TDP1Q9NUW8 EDDM3A-201ENST00000326842 927 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
TDP1Q9NUW8 AC004057.1-202ENST00000356247 284 ntTSL 3 BASIC4.32□□□□□ -1.72
TDP1Q9NUW8 RNU6-1155P-201ENST00000363554 107 ntBASIC4.32□□□□□ -1.72
TDP1Q9NUW8 RNA5SP22-201ENST00000365393 109 ntBASIC4.32□□□□□ -1.72
TDP1Q9NUW8 MIR135A2-201ENST00000384854 100 ntBASIC4.32□□□□□ -1.72
TDP1Q9NUW8 RNU6-754P-201ENST00000391166 107 ntBASIC4.32□□□□□ -1.72
TDP1Q9NUW8 RNU6-1158P-201ENST00000391167 107 ntBASIC4.32□□□□□ -1.72
TDP1Q9NUW8 AC009237.5-201ENST00000414271 501 ntBASIC4.32□□□□□ -1.72
TDP1Q9NUW8 AC138393.2-201ENST00000414742 246 ntBASIC4.32□□□□□ -1.72
TDP1Q9NUW8 AC012506.4-201ENST00000421563 541 ntTSL 4 BASIC4.32□□□□□ -1.72
TDP1Q9NUW8 AL355314.2-201ENST00000427182 436 ntTSL 3 BASIC4.32□□□□□ -1.72
TDP1Q9NUW8 AL589986.2-201ENST00000429352 397 ntTSL 2 BASIC4.32□□□□□ -1.72
TDP1Q9NUW8 GTF2IP20-201ENST00000431663 360 ntBASIC4.32□□□□□ -1.72
TDP1Q9NUW8 AC004837.2-201ENST00000435766 731 ntTSL 3 BASIC4.32□□□□□ -1.72
TDP1Q9NUW8 MIR548XHG-203ENST00000437492 853 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
TDP1Q9NUW8 AC097347.1-201ENST00000438499 517 ntTSL 3 BASIC4.32□□□□□ -1.72
TDP1Q9NUW8 AL138799.3-201ENST00000438968 350 ntBASIC4.32□□□□□ -1.72
TDP1Q9NUW8 BNIP3P2-201ENST00000441221 577 ntBASIC4.32□□□□□ -1.72
TDP1Q9NUW8 AL442647.1-201ENST00000449485 481 ntTSL 5 BASIC4.32□□□□□ -1.72
TDP1Q9NUW8 AC006480.1-201ENST00000449887 378 ntBASIC4.32□□□□□ -1.72
TDP1Q9NUW8 AC079804.1-201ENST00000461922 436 ntBASIC4.32□□□□□ -1.72
TDP1Q9NUW8 AC022795.1-201ENST00000473808 480 ntBASIC4.32□□□□□ -1.72
TDP1Q9NUW8 VN1R105P-201ENST00000486595 910 ntBASIC4.32□□□□□ -1.72
TDP1Q9NUW8 ATP6V1G3-204ENST00000489986 449 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
TDP1Q9NUW8 RPL7P23-201ENST00000493874 747 ntBASIC4.32□□□□□ -1.72
TDP1Q9NUW8 AC027801.4-201ENST00000518420 395 ntTSL 5 BASIC4.32□□□□□ -1.72
TDP1Q9NUW8 AC103783.1-201ENST00000520506 373 ntBASIC4.32□□□□□ -1.72
TDP1Q9NUW8 AC025575.1-201ENST00000548497 544 ntTSL 4 BASIC4.32□□□□□ -1.72
TDP1Q9NUW8 AC084879.2-201ENST00000551656 369 ntTSL 3 BASIC4.32□□□□□ -1.72
TDP1Q9NUW8 LINC02326-201ENST00000552028 540 ntTSL 3 BASIC4.32□□□□□ -1.72
TDP1Q9NUW8 LINC02277-201ENST00000553386 453 ntTSL 2 BASIC4.32□□□□□ -1.72
TDP1Q9NUW8 RPL21P12-201ENST00000559810 515 ntBASIC4.32□□□□□ -1.72
TDP1Q9NUW8 AC007342.4-202ENST00000565189 721 ntTSL 3 BASIC4.32□□□□□ -1.72
TDP1Q9NUW8 HMGB1P6-201ENST00000569046 646 ntBASIC4.32□□□□□ -1.72
TDP1Q9NUW8 HMGN2P28-201ENST00000606102 262 ntBASIC4.32□□□□□ -1.72
TDP1Q9NUW8 AC093838.1-201ENST00000613014 469 ntBASIC4.32□□□□□ -1.72
TDP1Q9NUW8 AC068506.1-202ENST00000613388 545 ntTSL 3 BASIC4.32□□□□□ -1.72
TDP1Q9NUW8 AKAP11-201ENST00000025301 9920 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
TDP1Q9NUW8 PAPPA-AS1-201ENST00000445861 2450 ntBASIC4.32□□□□□ -1.72
TDP1Q9NUW8 AC087190.4-201ENST00000574616 8334 ntBASIC4.32□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 174.4 ms