Protein–RNA interactions for Protein: Q68DE3

USF3, Basic helix-loop-helix domain-containing protein USF3, humanhuman

Predictions only

Length 2,245 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF3Q68DE3 AL121972.1-201ENST00000402023 252 ntBASIC1.47□□□□□ -2.17
USF3Q68DE3 RNU2-37P-201ENST00000410695 177 ntBASIC1.47□□□□□ -2.17
USF3Q68DE3 RPS15AP12-201ENST00000419498 388 ntBASIC1.47□□□□□ -2.17
USF3Q68DE3 DNAJC19P4-201ENST00000440115 345 ntBASIC1.47□□□□□ -2.17
USF3Q68DE3 EHHADH-202ENST00000440662 656 ntTSL 3 BASIC1.47□□□□□ -2.17
USF3Q68DE3 AL138830.2-202ENST00000446358 786 ntTSL 2 BASIC1.47□□□□□ -2.17
USF3Q68DE3 AC092451.1-201ENST00000480211 153 ntBASIC1.47□□□□□ -2.17
USF3Q68DE3 VTRNA2-2P-201ENST00000516091 103 ntBASIC1.47□□□□□ -2.17
USF3Q68DE3 AC107882.1-201ENST00000530837 477 ntTSL 3 BASIC1.47□□□□□ -2.17
USF3Q68DE3 LINC02463-201ENST00000546414 497 ntTSL 3 BASIC1.47□□□□□ -2.17
USF3Q68DE3 AC121758.2-201ENST00000553271 193 ntBASIC1.47□□□□□ -2.17
USF3Q68DE3 AC024614.2-201ENST00000577584 372 ntBASIC1.47□□□□□ -2.17
USF3Q68DE3 MIR4458-201ENST00000578872 75 ntBASIC1.47□□□□□ -2.17
USF3Q68DE3 MIR3618-201ENST00000580330 88 ntBASIC1.47□□□□□ -2.17
USF3Q68DE3 MIR3199-1-201ENST00000582434 88 ntBASIC1.47□□□□□ -2.17
USF3Q68DE3 MIR6504-201ENST00000613520 61 ntBASIC1.47□□□□□ -2.17
USF3Q68DE3 TBL1XR1-208ENST00000430069 7948 ntAPPRIS P1 TSL 1 (best) BASIC1.47□□□□□ -2.17
USF3Q68DE3 DENND4A-202ENST00000443035 8665 ntTSL 1 (best) BASIC1.47□□□□□ -2.17
USF3Q68DE3 CXCL10-201ENST00000306602 1176 ntAPPRIS P1 TSL 1 (best) BASIC1.47□□□□□ -2.17
USF3Q68DE3 TTTY13-201ENST00000330337 659 ntTSL 1 (best) BASIC1.47□□□□□ -2.17
USF3Q68DE3 SNORD56.5-201ENST00000364281 72 ntBASIC1.47□□□□□ -2.17
USF3Q68DE3 MIR92A2-201ENST00000385299 75 ntBASIC1.47□□□□□ -2.17
USF3Q68DE3 USP9YP6-201ENST00000413550 854 ntBASIC1.47□□□□□ -2.17
USF3Q68DE3 AL357078.2-201ENST00000416486 427 ntBASIC1.47□□□□□ -2.17
USF3Q68DE3 AC234782.4-201ENST00000417646 1048 ntBASIC1.47□□□□□ -2.17
USF3Q68DE3 USP9YP34-201ENST00000453983 808 ntBASIC1.47□□□□□ -2.17
USF3Q68DE3 AL137847.2-201ENST00000458111 527 ntTSL 3 BASIC1.47□□□□□ -2.17
USF3Q68DE3 AC093297.2-207ENST00000505401 692 ntTSL 3 BASIC1.47□□□□□ -2.17
USF3Q68DE3 Y_RNA.670-201ENST00000516255 105 ntBASIC1.47□□□□□ -2.17
USF3Q68DE3 SNORA25.15-201ENST00000516487 89 ntBASIC1.47□□□□□ -2.17
USF3Q68DE3 AC004241.3-201ENST00000611728 517 ntBASIC1.47□□□□□ -2.17
USF3Q68DE3 LRRCC1-202ENST00000414626 4493 ntAPPRIS ALT2 TSL 1 (best) BASIC1.47□□□□□ -2.17
USF3Q68DE3 ZNF355P-201ENST00000427301 3216 ntBASIC1.46□□□□□ -2.18
USF3Q68DE3 CUBN-201ENST00000377823 705 ntTSL 3 BASIC1.46□□□□□ -2.18
USF3Q68DE3 RNU1-57P-201ENST00000384491 166 ntBASIC1.46□□□□□ -2.18
USF3Q68DE3 RNU2-40P-201ENST00000410833 196 ntBASIC1.46□□□□□ -2.18
USF3Q68DE3 AC092832.1-201ENST00000422934 400 ntBASIC1.46□□□□□ -2.18
USF3Q68DE3 LINC01766-201ENST00000453968 362 ntTSL 3 BASIC1.46□□□□□ -2.18
USF3Q68DE3 AC010627.1-201ENST00000503819 1294 ntBASIC1.46□□□□□ -2.18
USF3Q68DE3 AC104803.1-201ENST00000506917 529 ntTSL 3 BASIC1.46□□□□□ -2.18
USF3Q68DE3 AC087518.1-201ENST00000524098 187 ntTSL 3 BASIC1.46□□□□□ -2.18
USF3Q68DE3 OR5AQ1P-201ENST00000527596 927 ntBASIC1.46□□□□□ -2.18
USF3Q68DE3 COPS2-203ENST00000542928 1580 ntTSL 2 BASIC1.46□□□□□ -2.18
USF3Q68DE3 AC036222.2-201ENST00000579033 333 ntTSL 3 BASIC1.46□□□□□ -2.18
USF3Q68DE3 AC004542.1-201ENST00000602955 264 ntTSL 3 BASIC1.46□□□□□ -2.18
USF3Q68DE3 KTN1-207ENST00000438792 4449 ntAPPRIS ALT2 TSL 5 BASIC1.46□□□□□ -2.18
USF3Q68DE3 CFHR2-201ENST00000367415 1059 ntAPPRIS P2 TSL 1 (best) BASIC1.46□□□□□ -2.18
USF3Q68DE3 SET-203ENST00000372688 801 ntTSL 2 BASIC1.46□□□□□ -2.18
USF3Q68DE3 CCNB2P1-201ENST00000399411 1150 ntBASIC1.46□□□□□ -2.18
USF3Q68DE3 MIR1323-201ENST00000408090 73 ntBASIC1.46□□□□□ -2.18
USF3Q68DE3 RNA5SP492-201ENST00000411330 114 ntBASIC1.46□□□□□ -2.18
USF3Q68DE3 PRELID3BP11-201ENST00000414230 479 ntBASIC1.46□□□□□ -2.18
USF3Q68DE3 AC073464.3-201ENST00000422564 712 ntBASIC1.46□□□□□ -2.18
USF3Q68DE3 HMGB1P31-201ENST00000437242 427 ntBASIC1.46□□□□□ -2.18
USF3Q68DE3 RPL23AP55-201ENST00000498163 452 ntBASIC1.46□□□□□ -2.18
USF3Q68DE3 SEM1P1-201ENST00000506694 209 ntBASIC1.46□□□□□ -2.18
USF3Q68DE3 LNX1-AS1-202ENST00000510785 550 ntTSL 2 BASIC1.46□□□□□ -2.18
USF3Q68DE3 IGLVVI-22-1-201ENST00000521183 211 ntBASIC1.46□□□□□ -2.18
USF3Q68DE3 SETP2-201ENST00000553886 926 ntBASIC1.46□□□□□ -2.18
USF3Q68DE3 AC090751.1-201ENST00000566966 267 ntBASIC1.46□□□□□ -2.18
USF3Q68DE3 MIR4452-201ENST00000583004 71 ntBASIC1.46□□□□□ -2.18
USF3Q68DE3 KBTBD2-208ENST00000621876 1196 ntTSL 5 BASIC1.46□□□□□ -2.18
USF3Q68DE3 CADM2-AS1-201ENST00000476021 2656 ntTSL 1 (best) BASIC1.45□□□□□ -2.18
USF3Q68DE3 LRRC39-204ENST00000620882 1951 ntTSL 5 BASIC1.45□□□□□ -2.18
USF3Q68DE3 CLDN10-202ENST00000376855 701 ntTSL 2 BASIC1.45□□□□□ -2.18
USF3Q68DE3 LINC02198-201ENST00000504280 810 ntTSL 3 BASIC1.45□□□□□ -2.18
USF3Q68DE3 AC025755.1-201ENST00000521306 278 ntBASIC1.45□□□□□ -2.18
USF3Q68DE3 MYL12BP1-201ENST00000569826 507 ntBASIC1.45□□□□□ -2.18
USF3Q68DE3 MIR502-201ENST00000606349 86 ntBASIC1.45□□□□□ -2.18
USF3Q68DE3 PSMD5-AS1-215ENST00000640622 205 ntBASIC1.45□□□□□ -2.18
USF3Q68DE3 USP53-202ENST00000450251 6072 ntAPPRIS P1 TSL 5 BASIC1.45□□□□□ -2.18
USF3Q68DE3 MYSM1-208ENST00000622766 6020 ntTSL 1 (best) BASIC1.45□□□□□ -2.18
USF3Q68DE3 TAS2R20-201ENST00000538986 1381 ntAPPRIS P1 BASIC1.45□□□□□ -2.18
USF3Q68DE3 ANAPC10P1-201ENST00000395991 556 ntBASIC1.44□□□□□ -2.18
USF3Q68DE3 STAP1-202ENST00000396225 1146 ntAPPRIS P1 TSL 1 (best) BASIC1.44□□□□□ -2.18
USF3Q68DE3 HMGB1P27-201ENST00000431429 603 ntBASIC1.44□□□□□ -2.18
USF3Q68DE3 LPP-AS1-201ENST00000434996 494 ntTSL 3 BASIC1.44□□□□□ -2.18
USF3Q68DE3 XKRYP6-201ENST00000440468 1116 ntBASIC1.44□□□□□ -2.18
USF3Q68DE3 XKRYP3-201ENST00000442113 1116 ntBASIC1.44□□□□□ -2.18
USF3Q68DE3 AC099342.1-201ENST00000446399 1124 ntTSL 3 BASIC1.44□□□□□ -2.18
USF3Q68DE3 CDC42P1-201ENST00000456658 548 ntBASIC1.44□□□□□ -2.18
USF3Q68DE3 ARPC3P2-201ENST00000457786 533 ntBASIC1.44□□□□□ -2.18
USF3Q68DE3 AC026241.1-201ENST00000517873 2142 ntBASIC1.44□□□□□ -2.18
USF3Q68DE3 PDZD9-203ENST00000537222 1068 ntTSL 3 BASIC1.44□□□□□ -2.18
USF3Q68DE3 ZNF192P1-203ENST00000565888 810 ntBASIC1.44□□□□□ -2.18
USF3Q68DE3 AC106796.1-201ENST00000577173 615 ntTSL 3 BASIC1.44□□□□□ -2.18
USF3Q68DE3 AC096586.2-201ENST00000610260 441 ntBASIC1.44□□□□□ -2.18
USF3Q68DE3 CSNK1G3-202ENST00000360683 4047 ntAPPRIS ALT2 TSL 1 (best) BASIC1.44□□□□□ -2.18
USF3Q68DE3 TEX15-203ENST00000638951 11341 ntAPPRIS P1 TSL 5 BASIC1.44□□□□□ -2.18
USF3Q68DE3 MLIP-AS1-201ENST00000434196 1534 ntTSL 2 BASIC1.44□□□□□ -2.18
USF3Q68DE3 AC090740.1-201ENST00000623193 2262 ntBASIC1.44□□□□□ -2.18
USF3Q68DE3 ZNF876P-202ENST00000398732 1485 ntBASIC1.44□□□□□ -2.18
USF3Q68DE3 EEF1E1-201ENST00000379715 1077 ntAPPRIS P1 TSL 1 (best) BASIC1.44□□□□□ -2.18
USF3Q68DE3 ZNF788-202ENST00000397759 777 ntAPPRIS P1 TSL 5 BASIC1.44□□□□□ -2.18
USF3Q68DE3 GNGT1-202ENST00000428834 731 ntTSL 3 BASIC1.44□□□□□ -2.18
USF3Q68DE3 LINC01878-201ENST00000434559 769 ntTSL 3 BASIC1.44□□□□□ -2.18
USF3Q68DE3 HMGB1P12-201ENST00000438594 598 ntBASIC1.44□□□□□ -2.18
USF3Q68DE3 TTTY19-201ENST00000453955 269 ntTSL 1 (best) BASIC1.44□□□□□ -2.18
USF3Q68DE3 AC139718.1-201ENST00000508010 300 ntTSL 5 BASIC1.44□□□□□ -2.18
USF3Q68DE3 AC006499.2-201ENST00000513470 337 ntBASIC1.44□□□□□ -2.18
Retrieved 100 of 98,524 protein–RNA pairs in 109.4 ms