Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 AL132822.1-201ENST00000617063 513 ntBASIC4.5□□□□□ -1.69
USP39Q53GS9 uc_338.13-201ENST00000618243 179 ntBASIC4.5□□□□□ -1.69
USP39Q53GS9 7SK.10-201ENST00000621414 298 ntBASIC4.5□□□□□ -1.69
USP39Q53GS9 AC007792.1-201ENST00000623023 402 ntBASIC4.5□□□□□ -1.69
USP39Q53GS9 AC040168.1-201ENST00000623594 991 ntBASIC4.5□□□□□ -1.69
USP39Q53GS9 AC091953.2-201ENST00000623979 160 ntBASIC4.5□□□□□ -1.69
USP39Q53GS9 AL133216.2-202ENST00000634512 349 ntBASIC4.5□□□□□ -1.69
USP39Q53GS9 OR6K3-201ENST00000368145 1844 ntAPPRIS P1 BASIC4.5□□□□□ -1.69
USP39Q53GS9 KYNU-201ENST00000264170 15316 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
USP39Q53GS9 PRLR-217ENST00000618457 11688 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
USP39Q53GS9 UGT2A3-201ENST00000251566 2965 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
USP39Q53GS9 AC066616.2-201ENST00000559334 1481 ntBASIC4.49□□□□□ -1.69
USP39Q53GS9 AC006020.1-201ENST00000420179 1854 ntBASIC4.49□□□□□ -1.69
USP39Q53GS9 RASA1-205ENST00000512763 3060 ntAPPRIS ALT2 TSL 2 BASIC4.49□□□□□ -1.69
USP39Q53GS9 GALNT3-202ENST00000409882 2107 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
USP39Q53GS9 AC087190.4-201ENST00000574616 8334 ntBASIC4.49□□□□□ -1.69
USP39Q53GS9 NEGR1-201ENST00000306821 5577 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
USP39Q53GS9 MTX3-203ENST00000512560 4799 ntTSL 2 BASIC4.49□□□□□ -1.69
USP39Q53GS9 BCLAF1-207ENST00000527759 4373 ntAPPRIS ALT2 TSL 1 (best) BASIC4.49□□□□□ -1.69
USP39Q53GS9 SPRR2C-201ENST00000290702 219 ntBASIC4.49□□□□□ -1.69
USP39Q53GS9 NACAP2-201ENST00000318548 624 ntBASIC4.49□□□□□ -1.69
USP39Q53GS9 RNU1-130P-201ENST00000363930 160 ntBASIC4.49□□□□□ -1.69
USP39Q53GS9 RNU1-132P-201ENST00000364300 164 ntBASIC4.49□□□□□ -1.69
USP39Q53GS9 RNU6-108P-201ENST00000365558 107 ntBASIC4.49□□□□□ -1.69
USP39Q53GS9 SNORA20.2-201ENST00000383922 131 ntBASIC4.49□□□□□ -1.69
USP39Q53GS9 Y_RNA.459-201ENST00000384251 102 ntBASIC4.49□□□□□ -1.69
USP39Q53GS9 AL591416.1-201ENST00000404015 867 ntBASIC4.49□□□□□ -1.69
USP39Q53GS9 HYKK-202ENST00000408962 847 ntTSL 5 BASIC4.49□□□□□ -1.69
USP39Q53GS9 AL353612.1-201ENST00000428769 465 ntTSL 3 BASIC4.49□□□□□ -1.69
USP39Q53GS9 RPL23AP30-201ENST00000432419 501 ntBASIC4.49□□□□□ -1.69
USP39Q53GS9 TRAPPC2P9-201ENST00000434556 343 ntBASIC4.49□□□□□ -1.69
USP39Q53GS9 CEACAMP1-201ENST00000434624 1035 ntBASIC4.49□□□□□ -1.69
USP39Q53GS9 RPL23AP43-201ENST00000446445 471 ntBASIC4.49□□□□□ -1.69
USP39Q53GS9 AC009987.1-201ENST00000446888 806 ntTSL 5 BASIC4.49□□□□□ -1.69
USP39Q53GS9 AC079354.3-201ENST00000447111 311 ntTSL 2 BASIC4.49□□□□□ -1.69
USP39Q53GS9 SNAP25-AS1-205ENST00000453544 368 ntTSL 5 BASIC4.49□□□□□ -1.69
USP39Q53GS9 LINC00374-201ENST00000454780 800 ntTSL 3 BASIC4.49□□□□□ -1.69
USP39Q53GS9 MTND4P17-201ENST00000470444 350 ntBASIC4.49□□□□□ -1.69
USP39Q53GS9 ST13P14-201ENST00000474095 734 ntBASIC4.49□□□□□ -1.69
USP39Q53GS9 AC027575.1-201ENST00000481064 460 ntBASIC4.49□□□□□ -1.69
USP39Q53GS9 AC090096.1-201ENST00000489168 390 ntBASIC4.49□□□□□ -1.69
USP39Q53GS9 NREP-AS1-201ENST00000503242 411 ntTSL 3 BASIC4.49□□□□□ -1.69
USP39Q53GS9 AC100773.1-201ENST00000505409 520 ntTSL 5 BASIC4.49□□□□□ -1.69
USP39Q53GS9 AC010587.1-201ENST00000505809 469 ntBASIC4.49□□□□□ -1.69
USP39Q53GS9 AC008243.1-202ENST00000506527 481 ntTSL 5 BASIC4.49□□□□□ -1.69
USP39Q53GS9 AC020593.1-201ENST00000507399 299 ntBASIC4.49□□□□□ -1.69
USP39Q53GS9 KLHL2P1-201ENST00000508691 521 ntBASIC4.49□□□□□ -1.69
USP39Q53GS9 AC005741.1-201ENST00000511094 432 ntBASIC4.49□□□□□ -1.69
USP39Q53GS9 AC112196.1-201ENST00000515092 832 ntTSL 3 BASIC4.49□□□□□ -1.69
USP39Q53GS9 RNU6-1170P-201ENST00000515974 106 ntBASIC4.49□□□□□ -1.69
USP39Q53GS9 RNU6-202P-201ENST00000515998 96 ntBASIC4.49□□□□□ -1.69
USP39Q53GS9 RNU6-714P-201ENST00000516963 103 ntBASIC4.49□□□□□ -1.69
USP39Q53GS9 AC015468.3-201ENST00000518967 417 ntTSL 2 BASIC4.49□□□□□ -1.69
USP39Q53GS9 AC090572.1-201ENST00000519251 160 ntBASIC4.49□□□□□ -1.69
USP39Q53GS9 AC022616.3-201ENST00000523940 148 ntBASIC4.49□□□□□ -1.69
USP39Q53GS9 SPAG11B-207ENST00000528168 481 ntTSL 5 BASIC4.49□□□□□ -1.69
USP39Q53GS9 AC079584.2-201ENST00000548756 515 ntTSL 3 BASIC4.49□□□□□ -1.69
USP39Q53GS9 AL161713.1-201ENST00000555538 145 ntBASIC4.49□□□□□ -1.69
USP39Q53GS9 AL133371.2-201ENST00000556624 294 ntTSL 3 BASIC4.49□□□□□ -1.69
USP39Q53GS9 RPL21P7-201ENST00000557463 483 ntBASIC4.49□□□□□ -1.69
USP39Q53GS9 AC004147.1-201ENST00000580658 299 ntTSL 3 BASIC4.49□□□□□ -1.69
USP39Q53GS9 ZNF573-209ENST00000585724 453 ntTSL 5 BASIC4.49□□□□□ -1.69
USP39Q53GS9 AC008687.2-201ENST00000597865 520 ntBASIC4.49□□□□□ -1.69
USP39Q53GS9 AC006006.1-201ENST00000603082 144 ntBASIC4.49□□□□□ -1.69
USP39Q53GS9 AC020634.1-201ENST00000608701 549 ntBASIC4.49□□□□□ -1.69
USP39Q53GS9 AL589935.1-202ENST00000612512 393 ntTSL 5 BASIC4.49□□□□□ -1.69
USP39Q53GS9 ZNF726-205ENST00000575986 1522 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
USP39Q53GS9 OR8J3-203ENST00000641913 3047 ntAPPRIS P1 BASIC4.49□□□□□ -1.69
USP39Q53GS9 CFL2-202ENST00000341223 3131 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
USP39Q53GS9 LINC01592-202ENST00000518540 2367 ntTSL 2 BASIC4.49□□□□□ -1.69
USP39Q53GS9 CYP3A7-CYP3A51P-201ENST00000611620 1608 ntTSL 5 BASIC4.49□□□□□ -1.69
USP39Q53GS9 LINC01902-202ENST00000636983 4607 ntTSL 5 BASIC4.49□□□□□ -1.69
USP39Q53GS9 OR4G1P-203ENST00000641984 1631 ntBASIC4.49□□□□□ -1.69
USP39Q53GS9 CENPE-202ENST00000380026 8241 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
USP39Q53GS9 AL133412.1-201ENST00000380194 2992 ntBASIC4.49□□□□□ -1.69
USP39Q53GS9 SLC38A9-203ENST00000416547 2236 ntTSL 5 BASIC4.49□□□□□ -1.69
USP39Q53GS9 UBE2W-207ENST00000602593 2201 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
USP39Q53GS9 SCN3A-209ENST00000639244 8854 ntTSL 5 BASIC4.49□□□□□ -1.69
USP39Q53GS9 GPR183-201ENST00000376414 1700 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
USP39Q53GS9 DEPDC1-202ENST00000456315 5331 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
USP39Q53GS9 AL136964.1-201ENST00000622038 2990 ntBASIC4.48□□□□□ -1.69
USP39Q53GS9 MLH3-212ENST00000556740 4491 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
USP39Q53GS9 RNF17-204ENST00000339524 2203 ntTSL 2 BASIC4.48□□□□□ -1.69
USP39Q53GS9 SLC38A9-223ENST00000515629 2673 ntTSL 2 BASIC4.48□□□□□ -1.69
USP39Q53GS9 RN7SKP280-201ENST00000364196 304 ntBASIC4.48□□□□□ -1.69
USP39Q53GS9 WFDC6-202ENST00000372670 620 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
USP39Q53GS9 SNORD116-29-201ENST00000384516 83 ntBASIC4.48□□□□□ -1.69
USP39Q53GS9 RNU6-1105P-201ENST00000384774 107 ntBASIC4.48□□□□□ -1.69
USP39Q53GS9 SF3B1-202ENST00000409915 600 ntTSL 2 BASIC4.48□□□□□ -1.69
USP39Q53GS9 AC104462.1-201ENST00000414565 447 ntTSL 2 BASIC4.48□□□□□ -1.69
USP39Q53GS9 AC245054.2-201ENST00000415639 319 ntBASIC4.48□□□□□ -1.69
USP39Q53GS9 AC010163.2-201ENST00000416341 381 ntTSL 2 BASIC4.48□□□□□ -1.69
USP39Q53GS9 AL358176.2-201ENST00000425769 204 ntBASIC4.48□□□□□ -1.69
USP39Q53GS9 AL132765.1-201ENST00000434165 553 ntBASIC4.48□□□□□ -1.69
USP39Q53GS9 MIR548XHG-203ENST00000437492 853 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
USP39Q53GS9 LINC00395-202ENST00000451570 415 ntTSL 3 BASIC4.48□□□□□ -1.69
USP39Q53GS9 LINC01333-201ENST00000508083 724 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
USP39Q53GS9 AC008957.1-201ENST00000510740 478 ntTSL 3 BASIC4.48□□□□□ -1.69
USP39Q53GS9 RNA5SP497-201ENST00000516081 97 ntBASIC4.48□□□□□ -1.69
USP39Q53GS9 AC022360.2-202ENST00000517308 407 ntTSL 3 BASIC4.48□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 97.1 ms