Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 LINC01846-201ENST00000505908 651 ntTSL 5 BASIC2.41□□□□□ -2.02
CCDC88AQ3V6T2 RN7SKP234-201ENST00000517173 224 ntBASIC2.41□□□□□ -2.02
CCDC88AQ3V6T2 LINC02416-201ENST00000550019 540 ntTSL 4 BASIC2.41□□□□□ -2.02
CCDC88AQ3V6T2 AL353811.1-201ENST00000602851 736 ntTSL 5 BASIC2.41□□□□□ -2.02
CCDC88AQ3V6T2 RPAP2P1-201ENST00000603626 1168 ntBASIC2.41□□□□□ -2.02
CCDC88AQ3V6T2 AC069304.3-201ENST00000603938 1084 ntBASIC2.41□□□□□ -2.02
CCDC88AQ3V6T2 AC073111.2-201ENST00000605657 1075 ntBASIC2.41□□□□□ -2.02
CCDC88AQ3V6T2 AC139769.3-201ENST00000618383 175 ntBASIC2.41□□□□□ -2.02
CCDC88AQ3V6T2 AC090897.3-201ENST00000636973 1157 ntBASIC2.41□□□□□ -2.02
CCDC88AQ3V6T2 AC010680.1-201ENST00000590024 3590 ntBASIC2.41□□□□□ -2.02
CCDC88AQ3V6T2 PHF11-215ENST00000488958 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC2.41□□□□□ -2.02
CCDC88AQ3V6T2 RNU2-68P-201ENST00000410878 191 ntBASIC2.41□□□□□ -2.02
CCDC88AQ3V6T2 Z82209.1-201ENST00000422141 2135 ntBASIC2.41□□□□□ -2.02
CCDC88AQ3V6T2 AC093151.3-203ENST00000422305 514 ntTSL 3 BASIC2.41□□□□□ -2.02
CCDC88AQ3V6T2 AF274573.2-201ENST00000437772 520 ntTSL 5 BASIC2.41□□□□□ -2.02
CCDC88AQ3V6T2 C1DP3-201ENST00000455013 423 ntBASIC2.41□□□□□ -2.02
CCDC88AQ3V6T2 AC068781.1-201ENST00000488231 618 ntBASIC2.41□□□□□ -2.02
CCDC88AQ3V6T2 AC008494.2-201ENST00000514544 370 ntBASIC2.41□□□□□ -2.02
CCDC88AQ3V6T2 AC009509.2-201ENST00000538640 429 ntTSL 2 BASIC2.41□□□□□ -2.02
CCDC88AQ3V6T2 AC007001.1-201ENST00000590912 670 ntTSL 5 BASIC2.41□□□□□ -2.02
CCDC88AQ3V6T2 AP003117.1-201ENST00000602771 554 ntBASIC2.41□□□□□ -2.02
CCDC88AQ3V6T2 AL137246.1-201ENST00000607072 977 ntBASIC2.41□□□□□ -2.02
CCDC88AQ3V6T2 AC010872.1-201ENST00000624225 675 ntBASIC2.41□□□□□ -2.02
CCDC88AQ3V6T2 SATB1-AS1-266ENST00000630271 813 ntTSL 5 BASIC2.41□□□□□ -2.02
CCDC88AQ3V6T2 ZBED5-201ENST00000413761 2512 ntAPPRIS P1 TSL 1 (best) BASIC2.41□□□□□ -2.02
CCDC88AQ3V6T2 USP45-208ENST00000500704 5826 ntAPPRIS P1 TSL 5 BASIC2.4□□□□□ -2.02
CCDC88AQ3V6T2 AC002546.1-201ENST00000588041 2504 ntBASIC2.4□□□□□ -2.02
CCDC88AQ3V6T2 AL122034.1-201ENST00000427609 497 ntTSL 2 BASIC2.4□□□□□ -2.03
CCDC88AQ3V6T2 NDUFA5P10-201ENST00000432147 357 ntBASIC2.4□□□□□ -2.03
CCDC88AQ3V6T2 AL031663.1-201ENST00000437445 219 ntBASIC2.4□□□□□ -2.03
CCDC88AQ3V6T2 ARL5AP3-201ENST00000439327 386 ntBASIC2.4□□□□□ -2.03
CCDC88AQ3V6T2 RPL23AP76-201ENST00000441860 458 ntBASIC2.4□□□□□ -2.03
CCDC88AQ3V6T2 AL034418.1-201ENST00000448675 860 ntBASIC2.4□□□□□ -2.03
CCDC88AQ3V6T2 GZMAP1-201ENST00000503054 631 ntBASIC2.4□□□□□ -2.03
CCDC88AQ3V6T2 AC097460.1-201ENST00000514624 590 ntTSL 3 BASIC2.4□□□□□ -2.03
CCDC88AQ3V6T2 AC117505.1-202ENST00000547027 566 ntTSL 3 BASIC2.4□□□□□ -2.03
CCDC88AQ3V6T2 AC093012.1-203ENST00000548437 450 ntTSL 2 BASIC2.4□□□□□ -2.03
CCDC88AQ3V6T2 AL136298.1-202ENST00000556520 518 ntTSL 3 BASIC2.4□□□□□ -2.03
CCDC88AQ3V6T2 AC106796.1-201ENST00000577173 615 ntTSL 3 BASIC2.4□□□□□ -2.03
CCDC88AQ3V6T2 AC138473.1-201ENST00000605717 526 ntBASIC2.4□□□□□ -2.03
CCDC88AQ3V6T2 AL391813.2-201ENST00000609113 322 ntBASIC2.4□□□□□ -2.03
CCDC88AQ3V6T2 TXLNGY-201ENST00000253320 7299 ntTSL 2 BASIC2.4□□□□□ -2.03
CCDC88AQ3V6T2 DYNC2H1-203ENST00000398093 12945 ntAPPRIS P3 TSL 5 BASIC2.4□□□□□ -2.03
CCDC88AQ3V6T2 SNORA7.2-201ENST00000364446 145 ntBASIC2.39□□□□□ -2.03
CCDC88AQ3V6T2 Y_RNA.540-201ENST00000384638 111 ntBASIC2.39□□□□□ -2.03
CCDC88AQ3V6T2 FGF7P8-201ENST00000402994 292 ntBASIC2.39□□□□□ -2.03
CCDC88AQ3V6T2 U3.37-201ENST00000408528 213 ntBASIC2.39□□□□□ -2.03
CCDC88AQ3V6T2 RNU2-21P-201ENST00000410368 188 ntBASIC2.39□□□□□ -2.03
CCDC88AQ3V6T2 TRAPPC13P1-201ENST00000435991 1062 ntBASIC2.39□□□□□ -2.03
CCDC88AQ3V6T2 LINC01510-201ENST00000441991 468 ntTSL 3 BASIC2.39□□□□□ -2.03
CCDC88AQ3V6T2 AL357140.2-201ENST00000445884 440 ntTSL 3 BASIC2.39□□□□□ -2.03
CCDC88AQ3V6T2 MDM2-217ENST00000478070 692 ntTSL 1 (best) BASIC2.39□□□□□ -2.03
CCDC88AQ3V6T2 AC109486.1-201ENST00000486833 374 ntBASIC2.39□□□□□ -2.03
CCDC88AQ3V6T2 AC117394.2-201ENST00000487827 323 ntTSL 3 BASIC2.39□□□□□ -2.03
CCDC88AQ3V6T2 AC018861.2-201ENST00000518078 513 ntTSL 2 BASIC2.39□□□□□ -2.03
CCDC88AQ3V6T2 AC090092.1-201ENST00000530576 510 ntTSL 2 BASIC2.39□□□□□ -2.03
CCDC88AQ3V6T2 G2E3-AS1-204ENST00000552511 402 ntTSL 2 BASIC2.39□□□□□ -2.03
CCDC88AQ3V6T2 MIR3690-201ENST00000580266 75 ntBASIC2.39□□□□□ -2.03
CCDC88AQ3V6T2 AP001180.3-201ENST00000582221 145 ntBASIC2.39□□□□□ -2.03
CCDC88AQ3V6T2 VIS1.1-201ENST00000610517 203 ntBASIC2.39□□□□□ -2.03
CCDC88AQ3V6T2 LINC00976-201ENST00000625513 783 ntTSL 3 BASIC2.39□□□□□ -2.03
CCDC88AQ3V6T2 AC131280.1-202ENST00000624067 4211 ntBASIC2.39□□□□□ -2.03
CCDC88AQ3V6T2 EVI2A-201ENST00000247270 1860 ntAPPRIS P3 TSL 2 BASIC2.39□□□□□ -2.03
CCDC88AQ3V6T2 AC027514.1-201ENST00000588561 1603 ntBASIC2.39□□□□□ -2.03
CCDC88AQ3V6T2 RGPD1-204ENST00000559485 5247 ntAPPRIS P2 TSL 1 (best) BASIC2.39□□□□□ -2.03
CCDC88AQ3V6T2 AC012321.1-201ENST00000561622 1588 ntBASIC2.39□□□□□ -2.03
CCDC88AQ3V6T2 MTND4P31-201ENST00000425607 1343 ntBASIC2.39□□□□□ -2.03
CCDC88AQ3V6T2 FDCSP-201ENST00000317987 566 ntAPPRIS P1 TSL 1 (best) BASIC2.39□□□□□ -2.03
CCDC88AQ3V6T2 OR4K11P-201ENST00000431829 904 ntBASIC2.39□□□□□ -2.03
CCDC88AQ3V6T2 HMGB1P31-201ENST00000437242 427 ntBASIC2.39□□□□□ -2.03
CCDC88AQ3V6T2 AL606534.3-201ENST00000437499 373 ntTSL 5 BASIC2.39□□□□□ -2.03
CCDC88AQ3V6T2 AC107398.2-201ENST00000508081 601 ntTSL 5 BASIC2.39□□□□□ -2.03
CCDC88AQ3V6T2 AC087241.1-201ENST00000508615 429 ntTSL 5 BASIC2.39□□□□□ -2.03
CCDC88AQ3V6T2 TMCO5B-203ENST00000529623 509 ntTSL 4 BASIC2.39□□□□□ -2.03
CCDC88AQ3V6T2 ARL2BPP2-201ENST00000550907 489 ntBASIC2.39□□□□□ -2.03
CCDC88AQ3V6T2 POLR2KP1-201ENST00000553226 168 ntBASIC2.39□□□□□ -2.03
CCDC88AQ3V6T2 AC002558.3-201ENST00000574021 401 ntTSL 3 BASIC2.39□□□□□ -2.03
CCDC88AQ3V6T2 AC008687.2-201ENST00000597865 520 ntBASIC2.39□□□□□ -2.03
CCDC88AQ3V6T2 SNRPGP19-201ENST00000603826 189 ntBASIC2.39□□□□□ -2.03
CCDC88AQ3V6T2 AC090525.3-201ENST00000605601 189 ntBASIC2.39□□□□□ -2.03
CCDC88AQ3V6T2 CHD1-201ENST00000284049 6457 ntAPPRIS P1 TSL 1 (best) BASIC2.38□□□□□ -2.03
CCDC88AQ3V6T2 MME-216ENST00000615825 5523 ntAPPRIS P1 TSL 1 (best) BASIC2.38□□□□□ -2.03
CCDC88AQ3V6T2 DEFB112-201ENST00000322246 342 ntAPPRIS P1 TSL 1 (best) BASIC2.38□□□□□ -2.03
CCDC88AQ3V6T2 RNU6-31P-201ENST00000384388 108 ntBASIC2.38□□□□□ -2.03
CCDC88AQ3V6T2 C1D-204ENST00000410067 736 ntAPPRIS P1 TSL 1 (best) BASIC2.38□□□□□ -2.03
CCDC88AQ3V6T2 AL513331.1-201ENST00000411908 397 ntBASIC2.38□□□□□ -2.03
CCDC88AQ3V6T2 AC007182.2-201ENST00000489251 402 ntBASIC2.38□□□□□ -2.03
CCDC88AQ3V6T2 AC020651.1-201ENST00000490324 360 ntTSL 3 BASIC2.38□□□□□ -2.03
CCDC88AQ3V6T2 AC093772.1-201ENST00000513519 506 ntTSL 2 BASIC2.38□□□□□ -2.03
CCDC88AQ3V6T2 AC022360.2-202ENST00000517308 407 ntTSL 3 BASIC2.38□□□□□ -2.03
CCDC88AQ3V6T2 AC008562.1-201ENST00000521763 330 ntBASIC2.38□□□□□ -2.03
CCDC88AQ3V6T2 ISCA1P3-201ENST00000577104 373 ntBASIC2.38□□□□□ -2.03
CCDC88AQ3V6T2 AC104984.2-201ENST00000582938 385 ntTSL 3 BASIC2.38□□□□□ -2.03
CCDC88AQ3V6T2 AC022150.3-201ENST00000599143 880 ntTSL 5 BASIC2.38□□□□□ -2.03
CCDC88AQ3V6T2 AC012360.2-201ENST00000609349 391 ntBASIC2.38□□□□□ -2.03
CCDC88AQ3V6T2 AP000553.5-201ENST00000641933 54 ntBASIC2.38□□□□□ -2.03
CCDC88AQ3V6T2 PABPC1P7-201ENST00000413177 1513 ntBASIC2.38□□□□□ -2.03
CCDC88AQ3V6T2 AL627390.1-201ENST00000396055 340 ntBASIC2.37□□□□□ -2.03
CCDC88AQ3V6T2 AL139254.1-201ENST00000421114 376 ntTSL 3 BASIC2.37□□□□□ -2.03
CCDC88AQ3V6T2 RPL23AP16-201ENST00000441715 421 ntBASIC2.37□□□□□ -2.03
Retrieved 100 of 98,524 protein–RNA pairs in 103.2 ms