Protein–RNA interactions for Protein: Q15475

SIX1, Homeobox protein SIX1, humanhuman

Predicted RBP Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX1Q15475 RN7SL863P-201ENST00000462370 296 ntBASIC3.14□□□□□ -1.91
SIX1Q15475 RPL30P6-201ENST00000475925 342 ntBASIC3.14□□□□□ -1.91
SIX1Q15475 AC109925.1-201ENST00000478069 331 ntBASIC3.14□□□□□ -1.91
SIX1Q15475 AC110794.1-201ENST00000505816 425 ntBASIC3.14□□□□□ -1.91
SIX1Q15475 AC096577.1-203ENST00000506386 541 ntTSL 3 BASIC3.14□□□□□ -1.91
SIX1Q15475 AC005178.1-201ENST00000508392 440 ntBASIC3.14□□□□□ -1.91
SIX1Q15475 TEMN3-AS1-201ENST00000510211 401 ntTSL 3 BASIC3.14□□□□□ -1.91
SIX1Q15475 PTGES3P3-201ENST00000511479 482 ntBASIC3.14□□□□□ -1.91
SIX1Q15475 MTCYBP43-201ENST00000513621 740 ntBASIC3.14□□□□□ -1.91
SIX1Q15475 AC093879.2-201ENST00000513645 427 ntTSL 3 BASIC3.14□□□□□ -1.91
SIX1Q15475 RNU4-60P-201ENST00000517239 135 ntBASIC3.14□□□□□ -1.91
SIX1Q15475 ELOC-204ENST00000519487 814 ntAPPRIS P1 TSL 2 BASIC3.14□□□□□ -1.91
SIX1Q15475 MS4A13-204ENST00000527948 790 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
SIX1Q15475 AC009511.1-201ENST00000543527 191 ntTSL 5 BASIC3.14□□□□□ -1.91
SIX1Q15475 NR2F2-AS1-211ENST00000561402 589 ntTSL 3 BASIC3.14□□□□□ -1.91
SIX1Q15475 LINC02126-202ENST00000563754 750 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
SIX1Q15475 LINC01482-203ENST00000589610 468 ntTSL 3 BASIC3.14□□□□□ -1.91
SIX1Q15475 SATB1-AS1-207ENST00000593741 955 ntTSL 5 BASIC3.14□□□□□ -1.91
SIX1Q15475 AC003973.1-201ENST00000600071 546 ntTSL 4 BASIC3.14□□□□□ -1.91
SIX1Q15475 AL355376.2-201ENST00000603866 267 ntTSL 5 BASIC3.14□□□□□ -1.91
SIX1Q15475 RNA5SP108-201ENST00000605921 117 ntBASIC3.14□□□□□ -1.91
SIX1Q15475 RNU6-88P-201ENST00000606801 100 ntBASIC3.14□□□□□ -1.91
SIX1Q15475 RMDN2-AS1-204ENST00000626669 448 ntTSL 5 BASIC3.14□□□□□ -1.91
SIX1Q15475 MIR3974-201ENST00000637126 96 ntBASIC3.14□□□□□ -1.91
SIX1Q15475 ABBA01000935.2-201ENST00000637477 838 ntBASIC3.14□□□□□ -1.91
SIX1Q15475 MIR622-201ENST00000638396 96 ntBASIC3.14□□□□□ -1.91
SIX1Q15475 NEB-220ENST00000618972 26307 ntAPPRIS ALT2 TSL 5 BASIC3.14□□□□□ -1.91
SIX1Q15475 AL365440.2-201ENST00000419738 2597 ntTSL 2 BASIC3.14□□□□□ -1.91
SIX1Q15475 PRKD3-202ENST00000379066 6111 ntAPPRIS P1 TSL 5 BASIC3.14□□□□□ -1.91
SIX1Q15475 CCDC82-201ENST00000278520 2941 ntAPPRIS P2 TSL 5 BASIC3.14□□□□□ -1.91
SIX1Q15475 POLK-204ENST00000504026 1484 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
SIX1Q15475 AL445259.1-201ENST00000587106 2984 ntTSL 5 BASIC3.14□□□□□ -1.91
SIX1Q15475 AC093010.3-201ENST00000570269 15214 ntBASIC3.14□□□□□ -1.91
SIX1Q15475 GNAI3-201ENST00000369851 27174 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
SIX1Q15475 SAMD9-201ENST00000379958 6852 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
SIX1Q15475 CALCRL-203ENST00000410068 1984 ntAPPRIS P1 TSL 2 BASIC3.13□□□□□ -1.91
SIX1Q15475 LINC00301-201ENST00000320202 852 ntTSL 2 BASIC3.13□□□□□ -1.91
SIX1Q15475 OR6C75-201ENST00000343399 939 ntAPPRIS P1 BASIC3.13□□□□□ -1.91
SIX1Q15475 RNU6-500P-201ENST00000362349 107 ntBASIC3.13□□□□□ -1.91
SIX1Q15475 RNU6-433P-201ENST00000363216 104 ntBASIC3.13□□□□□ -1.91
SIX1Q15475 Y_RNA.302-201ENST00000364997 102 ntBASIC3.13□□□□□ -1.91
SIX1Q15475 RNA5SP88-201ENST00000365560 109 ntBASIC3.13□□□□□ -1.91
SIX1Q15475 SNORA9-201ENST00000384215 133 ntBASIC3.13□□□□□ -1.91
SIX1Q15475 MT-TC-201ENST00000387405 66 ntBASIC3.13□□□□□ -1.91
SIX1Q15475 U3.19-201ENST00000390893 196 ntBASIC3.13□□□□□ -1.91
SIX1Q15475 U3.29-201ENST00000391296 212 ntBASIC3.13□□□□□ -1.91
SIX1Q15475 HIST1H2APS3-201ENST00000403259 134 ntBASIC3.13□□□□□ -1.91
SIX1Q15475 RNA5SP274-201ENST00000410484 108 ntBASIC3.13□□□□□ -1.91
SIX1Q15475 UBE2Q2P12-201ENST00000414573 204 ntBASIC3.13□□□□□ -1.91
SIX1Q15475 OFD1P11Y-201ENST00000418213 1177 ntBASIC3.13□□□□□ -1.91
SIX1Q15475 SDCBPP3-201ENST00000419629 891 ntBASIC3.13□□□□□ -1.91
SIX1Q15475 MTND1P20-201ENST00000430341 950 ntBASIC3.13□□□□□ -1.91
SIX1Q15475 AL161935.3-201ENST00000433770 347 ntTSL 2 BASIC3.13□□□□□ -1.91
SIX1Q15475 TTTY20-201ENST00000434487 259 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
SIX1Q15475 AL590103.1-201ENST00000434488 307 ntBASIC3.13□□□□□ -1.91
SIX1Q15475 LINC00353-201ENST00000435401 685 ntTSL 5 BASIC3.13□□□□□ -1.91
SIX1Q15475 UBE2FP3-201ENST00000436366 524 ntBASIC3.13□□□□□ -1.91
SIX1Q15475 AL731568.1-201ENST00000445111 434 ntTSL 2 BASIC3.13□□□□□ -1.91
SIX1Q15475 FGF14-AS1-202ENST00000451630 321 ntTSL 2 BASIC3.13□□□□□ -1.91
SIX1Q15475 OR6C5P-201ENST00000452388 923 ntBASIC3.13□□□□□ -1.91
SIX1Q15475 AC093422.2-201ENST00000452599 686 ntTSL 2 BASIC3.13□□□□□ -1.91
SIX1Q15475 ARPC3P2-201ENST00000457786 533 ntBASIC3.13□□□□□ -1.91
SIX1Q15475 MEMO1P3-201ENST00000459811 302 ntBASIC3.13□□□□□ -1.91
SIX1Q15475 NCOR1P1-201ENST00000478176 406 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
SIX1Q15475 THAP6-205ENST00000504190 1004 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
SIX1Q15475 CSN1S1-204ENST00000507772 895 ntAPPRIS ALT2 TSL 5 BASIC3.13□□□□□ -1.91
SIX1Q15475 AP005357.1-201ENST00000520749 476 ntTSL 3 BASIC3.13□□□□□ -1.91
SIX1Q15475 AP003718.1-201ENST00000529884 583 ntTSL 4 BASIC3.13□□□□□ -1.91
SIX1Q15475 AC007954.1-201ENST00000554198 494 ntBASIC3.13□□□□□ -1.91
SIX1Q15475 AC136618.2-201ENST00000575091 400 ntBASIC3.13□□□□□ -1.91
SIX1Q15475 AC090409.2-202ENST00000585706 604 ntTSL 5 BASIC3.13□□□□□ -1.91
SIX1Q15475 AC083760.1-201ENST00000589621 670 ntBASIC3.13□□□□□ -1.91
SIX1Q15475 AC013444.2-201ENST00000603317 787 ntBASIC3.13□□□□□ -1.91
SIX1Q15475 Z99497.2-201ENST00000603634 310 ntBASIC3.13□□□□□ -1.91
SIX1Q15475 AC121247.2-201ENST00000604776 136 ntBASIC3.13□□□□□ -1.91
SIX1Q15475 AC010738.1-201ENST00000604970 987 ntBASIC3.13□□□□□ -1.91
SIX1Q15475 AC122133.1-201ENST00000613964 233 ntBASIC3.13□□□□□ -1.91
SIX1Q15475 CLECL1-204ENST00000621400 611 ntAPPRIS ALT2 TSL 5 BASIC3.13□□□□□ -1.91
SIX1Q15475 AC091953.5-201ENST00000622919 233 ntBASIC3.13□□□□□ -1.91
SIX1Q15475 PCNP-208ENST00000627393 136 ntTSL 2 BASIC3.13□□□□□ -1.91
SIX1Q15475 AC098617.1-218ENST00000628836 624 ntTSL 5 BASIC3.13□□□□□ -1.91
SIX1Q15475 PCMTD1P7-201ENST00000634506 357 ntBASIC3.13□□□□□ -1.91
SIX1Q15475 AC099063.3-201ENST00000642066 185 ntBASIC3.13□□□□□ -1.91
SIX1Q15475 PHF6-205ENST00000625464 4434 ntAPPRIS ALT1 TSL 5 BASIC3.13□□□□□ -1.91
SIX1Q15475 ZNF705G-201ENST00000400156 3644 ntAPPRIS P1 TSL 2 BASIC3.13□□□□□ -1.91
SIX1Q15475 LRRC39-204ENST00000620882 1951 ntTSL 5 BASIC3.12□□□□□ -1.91
SIX1Q15475 AP003122.5-201ENST00000527668 3766 ntBASIC3.12□□□□□ -1.91
SIX1Q15475 ANKRD62P1-201ENST00000434304 1623 ntBASIC3.12□□□□□ -1.91
SIX1Q15475 SEL1L2-202ENST00000378072 1892 ntTSL 2 BASIC3.12□□□□□ -1.91
SIX1Q15475 MIR133A1HG-202ENST00000581072 4226 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
SIX1Q15475 OR5J2-201ENST00000312298 939 ntAPPRIS P1 BASIC3.12□□□□□ -1.91
SIX1Q15475 OR5T2-201ENST00000313264 1248 ntAPPRIS P2 BASIC3.12□□□□□ -1.91
SIX1Q15475 SNORD116-2-201ENST00000384274 95 ntBASIC3.12□□□□□ -1.91
SIX1Q15475 Y_RNA.493-201ENST00000384422 102 ntBASIC3.12□□□□□ -1.91
SIX1Q15475 RNU6-878P-201ENST00000384578 110 ntBASIC3.12□□□□□ -1.91
SIX1Q15475 SNORD116-6-201ENST00000384711 96 ntBASIC3.12□□□□□ -1.91
SIX1Q15475 SNORD15B-201ENST00000384714 146 ntBASIC3.12□□□□□ -1.91
SIX1Q15475 NT5C3A-205ENST00000409467 1032 ntAPPRIS ALT1 TSL 5 BASIC3.12□□□□□ -1.91
SIX1Q15475 RNA5SP56-201ENST00000410277 118 ntBASIC3.12□□□□□ -1.91
SIX1Q15475 LINC01201-201ENST00000412420 294 ntTSL 3 BASIC3.12□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 130.7 ms