Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 AL356379.1-201ENST00000414105 126 ntBASIC1.67□□□□□ -2.14
FOXA3P55318 OFD1P11Y-201ENST00000418213 1177 ntBASIC1.67□□□□□ -2.14
FOXA3P55318 AC026355.1-201ENST00000423466 587 ntTSL 5 BASIC1.67□□□□□ -2.14
FOXA3P55318 AC087857.1-201ENST00000425894 467 ntTSL 3 BASIC1.67□□□□□ -2.14
FOXA3P55318 AC098614.2-201ENST00000426040 255 ntBASIC1.67□□□□□ -2.14
FOXA3P55318 MTATP6P11-201ENST00000428071 670 ntBASIC1.67□□□□□ -2.14
FOXA3P55318 ARL5AP4-201ENST00000430731 512 ntBASIC1.67□□□□□ -2.14
FOXA3P55318 INTS6-AS1-201ENST00000434512 466 ntTSL 3 BASIC1.67□□□□□ -2.14
FOXA3P55318 AC010723.1-201ENST00000435111 540 ntTSL 3 BASIC1.67□□□□□ -2.14
FOXA3P55318 UBE2FP3-201ENST00000436366 524 ntBASIC1.67□□□□□ -2.14
FOXA3P55318 AC105272.1-201ENST00000438604 198 ntBASIC1.67□□□□□ -2.14
FOXA3P55318 AC064871.1-201ENST00000444562 427 ntTSL 3 BASIC1.67□□□□□ -2.14
FOXA3P55318 AL589684.1-201ENST00000445974 507 ntTSL 3 BASIC1.67□□□□□ -2.14
FOXA3P55318 WASF1P1-201ENST00000447560 1131 ntBASIC1.67□□□□□ -2.14
FOXA3P55318 AL137847.2-201ENST00000458111 527 ntTSL 3 BASIC1.67□□□□□ -2.14
FOXA3P55318 AC025033.1-201ENST00000463883 194 ntBASIC1.67□□□□□ -2.14
FOXA3P55318 S100A11P2-201ENST00000467589 312 ntBASIC1.67□□□□□ -2.14
FOXA3P55318 AC128713.1-201ENST00000471495 306 ntBASIC1.67□□□□□ -2.14
FOXA3P55318 OR52A4P-202ENST00000481634 799 ntBASIC1.67□□□□□ -2.14
FOXA3P55318 AC109486.1-201ENST00000486833 374 ntBASIC1.67□□□□□ -2.14
FOXA3P55318 OR52A4P-203ENST00000498233 1014 ntBASIC1.67□□□□□ -2.14
FOXA3P55318 SETP12-201ENST00000514068 805 ntBASIC1.67□□□□□ -2.14
FOXA3P55318 RNA5SP364-201ENST00000516938 78 ntBASIC1.67□□□□□ -2.14
FOXA3P55318 AC025524.1-201ENST00000518489 606 ntTSL 4 BASIC1.67□□□□□ -2.14
FOXA3P55318 COX6CP8-201ENST00000522620 226 ntBASIC1.67□□□□□ -2.14
FOXA3P55318 ATP5F1P5-201ENST00000526403 760 ntBASIC1.67□□□□□ -2.14
FOXA3P55318 AC118942.1-201ENST00000529674 1035 ntBASIC1.67□□□□□ -2.14
FOXA3P55318 AC103794.1-201ENST00000531763 197 ntTSL 3 BASIC1.67□□□□□ -2.14
FOXA3P55318 SDHAF2-205ENST00000537782 559 ntTSL 4 BASIC1.67□□□□□ -2.14
FOXA3P55318 LINC02520-201ENST00000570443 537 ntTSL 4 BASIC1.67□□□□□ -2.14
FOXA3P55318 AP005057.1-201ENST00000583827 574 ntTSL 4 BASIC1.67□□□□□ -2.14
FOXA3P55318 AC004542.2-201ENST00000602847 546 ntTSL 3 BASIC1.67□□□□□ -2.14
FOXA3P55318 AC012443.1-201ENST00000605605 231 ntBASIC1.67□□□□□ -2.14
FOXA3P55318 SNORD14A-201ENST00000606526 91 ntBASIC1.67□□□□□ -2.14
FOXA3P55318 AC103810.6-201ENST00000606708 136 ntBASIC1.67□□□□□ -2.14
FOXA3P55318 AP002826.1-201ENST00000608835 315 ntBASIC1.67□□□□□ -2.14
FOXA3P55318 AC107294.1-201ENST00000609524 467 ntBASIC1.67□□□□□ -2.14
FOXA3P55318 VN1R74P-201ENST00000613259 503 ntBASIC1.67□□□□□ -2.14
FOXA3P55318 AC009831.4-201ENST00000620744 325 ntBASIC1.67□□□□□ -2.14
FOXA3P55318 AC092608.2-201ENST00000624427 218 ntBASIC1.67□□□□□ -2.14
FOXA3P55318 PCNP-208ENST00000627393 136 ntTSL 2 BASIC1.67□□□□□ -2.14
FOXA3P55318 AL359094.1-201ENST00000627944 566 ntTSL 5 BASIC1.67□□□□□ -2.14
FOXA3P55318 AL137790.1-201ENST00000634283 177 ntBASIC1.67□□□□□ -2.14
FOXA3P55318 MFSD8-245ENST00000641743 948 ntBASIC1.67□□□□□ -2.14
FOXA3P55318 AL359851.1-201ENST00000569460 4997 ntBASIC1.66□□□□□ -2.14
FOXA3P55318 SNORA3A-201ENST00000364113 130 ntBASIC1.66□□□□□ -2.14
FOXA3P55318 RNU6-441P-201ENST00000384545 106 ntBASIC1.66□□□□□ -2.14
FOXA3P55318 U3.20-201ENST00000390909 217 ntBASIC1.66□□□□□ -2.14
FOXA3P55318 RNU6-920P-201ENST00000410926 92 ntBASIC1.66□□□□□ -2.14
FOXA3P55318 RNU6-272P-201ENST00000411028 104 ntBASIC1.66□□□□□ -2.14
FOXA3P55318 HNRNPDLP1-201ENST00000412834 550 ntBASIC1.66□□□□□ -2.14
FOXA3P55318 NPM1P11-201ENST00000417106 855 ntBASIC1.66□□□□□ -2.14
FOXA3P55318 SEPT2P1-201ENST00000419651 180 ntBASIC1.66□□□□□ -2.14
FOXA3P55318 AC007560.1-201ENST00000426912 237 ntBASIC1.66□□□□□ -2.14
FOXA3P55318 AC017048.2-201ENST00000431455 822 ntTSL 3 BASIC1.66□□□□□ -2.14
FOXA3P55318 AC010881.1-201ENST00000433830 235 ntBASIC1.66□□□□□ -2.14
FOXA3P55318 AC018634.1-201ENST00000437554 401 ntBASIC1.66□□□□□ -2.14
FOXA3P55318 ARF4P4-201ENST00000439608 520 ntBASIC1.66□□□□□ -2.14
FOXA3P55318 AP000146.1-202ENST00000441666 441 ntTSL 3 BASIC1.66□□□□□ -2.14
FOXA3P55318 AL591848.2-201ENST00000442712 522 ntTSL 3 BASIC1.66□□□□□ -2.14
FOXA3P55318 RPL23AP7-203ENST00000449021 469 ntBASIC1.66□□□□□ -2.14
FOXA3P55318 RPS15AP27-201ENST00000449183 343 ntBASIC1.66□□□□□ -2.14
FOXA3P55318 AC104073.1-201ENST00000451988 151 ntBASIC1.66□□□□□ -2.14
FOXA3P55318 AL365295.1-201ENST00000454942 514 ntTSL 5 BASIC1.66□□□□□ -2.14
FOXA3P55318 NDUFAF4P3-201ENST00000456468 525 ntBASIC1.66□□□□□ -2.14
FOXA3P55318 AC117462.1-201ENST00000461186 554 ntTSL 4 BASIC1.66□□□□□ -2.14
FOXA3P55318 AC015724.1-201ENST00000478577 156 ntBASIC1.66□□□□□ -2.14
FOXA3P55318 SPINK9-202ENST00000511717 604 ntAPPRIS ALT2 TSL 5 BASIC1.66□□□□□ -2.14
FOXA3P55318 AC139720.2-201ENST00000514766 440 ntTSL 2 BASIC1.66□□□□□ -2.14
FOXA3P55318 AC106895.1-201ENST00000515825 548 ntTSL 4 BASIC1.66□□□□□ -2.14
FOXA3P55318 AC013509.1-201ENST00000524269 339 ntTSL 3 BASIC1.66□□□□□ -2.14
FOXA3P55318 CYCSP26-201ENST00000534107 320 ntBASIC1.66□□□□□ -2.14
FOXA3P55318 LINC02384-206ENST00000541707 904 ntTSL 3 BASIC1.66□□□□□ -2.14
FOXA3P55318 APAF1-207ENST00000547743 651 ntTSL 3 BASIC1.66□□□□□ -2.14
FOXA3P55318 AC087897.2-201ENST00000552639 678 ntTSL 1 (best) BASIC1.66□□□□□ -2.14
FOXA3P55318 AC012435.2-201ENST00000562869 361 ntTSL 3 BASIC1.66□□□□□ -2.14
FOXA3P55318 MIR3944-201ENST00000581277 108 ntBASIC1.66□□□□□ -2.14
FOXA3P55318 MIR5195-201ENST00000583555 115 ntBASIC1.66□□□□□ -2.14
FOXA3P55318 AC012669.1-201ENST00000603209 283 ntBASIC1.66□□□□□ -2.14
FOXA3P55318 AC018618.2-201ENST00000604770 446 ntBASIC1.66□□□□□ -2.14
FOXA3P55318 AC055876.5-201ENST00000605667 259 ntBASIC1.66□□□□□ -2.14
FOXA3P55318 AC046143.2-201ENST00000609789 160 ntBASIC1.66□□□□□ -2.14
FOXA3P55318 AC025594.3-201ENST00000613068 790 ntBASIC1.66□□□□□ -2.14
FOXA3P55318 AC068722.2-201ENST00000618734 544 ntBASIC1.66□□□□□ -2.14
FOXA3P55318 OR8K3-202ENST00000623845 939 ntAPPRIS P1 BASIC1.66□□□□□ -2.14
FOXA3P55318 KPNA2P1-201ENST00000458289 1591 ntBASIC1.66□□□□□ -2.14
FOXA3P55318 AGTR1-205ENST00000461609 1545 ntAPPRIS P1 TSL 3 BASIC1.66□□□□□ -2.14
FOXA3P55318 SENP7-205ENST00000394091 4434 ntAPPRIS ALT2 TSL 1 (best) BASIC1.65□□□□□ -2.14
FOXA3P55318 LPAR6-209ENST00000620633 2175 ntAPPRIS P1 TSL 5 BASIC1.65□□□□□ -2.14
FOXA3P55318 NT5C3A-203ENST00000396152 1788 ntAPPRIS P3 TSL 1 (best) BASIC1.65□□□□□ -2.14
FOXA3P55318 PLS1-201ENST00000337777 3755 ntAPPRIS P1 TSL 1 (best) BASIC1.65□□□□□ -2.15
FOXA3P55318 ZNF833P-201ENST00000424938 1494 ntBASIC1.65□□□□□ -2.15
FOXA3P55318 AC111188.2-201ENST00000529697 1387 ntBASIC1.65□□□□□ -2.15
FOXA3P55318 FAM133CP-201ENST00000332869 704 ntBASIC1.65□□□□□ -2.15
FOXA3P55318 RNA5SP171-201ENST00000391071 115 ntBASIC1.65□□□□□ -2.15
FOXA3P55318 RNU6-1197P-201ENST00000391183 107 ntBASIC1.65□□□□□ -2.15
FOXA3P55318 AL445529.1-201ENST00000398713 389 ntBASIC1.65□□□□□ -2.15
FOXA3P55318 RN7SKP27-201ENST00000410684 333 ntBASIC1.65□□□□□ -2.15
FOXA3P55318 RNU6-564P-201ENST00000410983 104 ntBASIC1.65□□□□□ -2.15
FOXA3P55318 HMGB1P11-201ENST00000413899 637 ntBASIC1.65□□□□□ -2.15
Retrieved 100 of 98,524 protein–RNA pairs in 93.5 ms