Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 SNORD56.4-201ENST00000363883 71 ntBASIC2.75□□□□□ -1.97
BRCA1P38398 CXorf66-201ENST00000370540 1281 ntAPPRIS P1 TSL 1 (best) BASIC2.75□□□□□ -1.97
BRCA1P38398 AL078590.2-202ENST00000422736 568 ntTSL 3 BASIC2.75□□□□□ -1.97
BRCA1P38398 MTCO2P17-201ENST00000424336 677 ntBASIC2.75□□□□□ -1.97
BRCA1P38398 FAM204CP-201ENST00000424489 642 ntBASIC2.75□□□□□ -1.97
BRCA1P38398 AL589935.1-212ENST00000450998 525 ntTSL 2 BASIC2.75□□□□□ -1.97
BRCA1P38398 AC072039.1-201ENST00000477611 581 ntBASIC2.75□□□□□ -1.97
BRCA1P38398 RPS27P23-201ENST00000487608 251 ntBASIC2.75□□□□□ -1.97
BRCA1P38398 HMGB1P38-201ENST00000490557 577 ntBASIC2.75□□□□□ -1.97
BRCA1P38398 XKRY-201ENST00000510392 1100 ntBASIC2.75□□□□□ -1.97
BRCA1P38398 AC093297.1-201ENST00000511712 591 ntTSL 4 BASIC2.75□□□□□ -1.97
BRCA1P38398 MIR4781-201ENST00000585250 76 ntBASIC2.75□□□□□ -1.97
BRCA1P38398 AC067747.1-201ENST00000608026 250 ntBASIC2.75□□□□□ -1.97
BRCA1P38398 AC091948.2-201ENST00000636510 279 ntBASIC2.75□□□□□ -1.97
BRCA1P38398 CFHR3-201ENST00000367425 1645 ntAPPRIS P1 TSL 1 (best) BASIC2.75□□□□□ -1.97
BRCA1P38398 SERPINI2-201ENST00000264677 1678 ntAPPRIS P1 TSL 1 (best) BASIC2.75□□□□□ -1.97
BRCA1P38398 DPY19L2P1-203ENST00000458672 3347 ntTSL 1 (best) BASIC2.75□□□□□ -1.97
BRCA1P38398 NT5C3A-202ENST00000381626 1909 ntAPPRIS ALT1 TSL 5 BASIC2.75□□□□□ -1.97
BRCA1P38398 CNIH4-201ENST00000366856 808 ntAPPRIS ALT1 TSL 2 BASIC2.75□□□□□ -1.97
BRCA1P38398 RNU6-932P-201ENST00000391108 106 ntBASIC2.75□□□□□ -1.97
BRCA1P38398 MEIG1-202ENST00000407572 625 ntAPPRIS P1 TSL 2 BASIC2.75□□□□□ -1.97
BRCA1P38398 HMGB1P11-201ENST00000413899 637 ntBASIC2.75□□□□□ -1.97
BRCA1P38398 FNDC1-IT1-201ENST00000419703 516 ntTSL 3 BASIC2.75□□□□□ -1.97
BRCA1P38398 AC069257.1-202ENST00000425275 422 ntTSL 3 BASIC2.75□□□□□ -1.97
BRCA1P38398 AL160411.1-201ENST00000429853 400 ntTSL 2 BASIC2.75□□□□□ -1.97
BRCA1P38398 AL590762.3-201ENST00000436372 640 ntBASIC2.75□□□□□ -1.97
BRCA1P38398 RPS24P6-201ENST00000452670 400 ntBASIC2.75□□□□□ -1.97
BRCA1P38398 SAR1B-211ENST00000509937 455 ntTSL 5 BASIC2.75□□□□□ -1.97
BRCA1P38398 RNU4ATAC10P-201ENST00000516967 122 ntBASIC2.75□□□□□ -1.97
BRCA1P38398 AC124657.1-201ENST00000527819 429 ntTSL 3 BASIC2.75□□□□□ -1.97
BRCA1P38398 MTCYBP41-201ENST00000528913 1123 ntBASIC2.75□□□□□ -1.97
BRCA1P38398 OR7K1P-201ENST00000546439 926 ntBASIC2.75□□□□□ -1.97
BRCA1P38398 AC063948.1-201ENST00000547360 379 ntTSL 5 BASIC2.75□□□□□ -1.97
BRCA1P38398 AP005059.2-201ENST00000577527 578 ntTSL 3 BASIC2.75□□□□□ -1.97
BRCA1P38398 AC098850.3-201ENST00000577569 771 ntTSL 3 BASIC2.75□□□□□ -1.97
BRCA1P38398 AC025682.1-201ENST00000582389 437 ntTSL 5 BASIC2.75□□□□□ -1.97
BRCA1P38398 snoU13.31-201ENST00000607291 104 ntBASIC2.75□□□□□ -1.97
BRCA1P38398 AC112503.2-201ENST00000609005 552 ntBASIC2.75□□□□□ -1.97
BRCA1P38398 AC098679.5-201ENST00000624394 571 ntBASIC2.75□□□□□ -1.97
BRCA1P38398 POLK-204ENST00000504026 1484 ntTSL 1 (best) BASIC2.75□□□□□ -1.97
BRCA1P38398 SYNE2-202ENST00000344113 21777 ntAPPRIS ALT2 TSL 1 (best) BASIC2.74□□□□□ -1.97
BRCA1P38398 CLEC4A-201ENST00000229332 1281 ntAPPRIS P1 TSL 1 (best) BASIC2.74□□□□□ -1.97
BRCA1P38398 SNORA51.4-201ENST00000364993 124 ntBASIC2.74□□□□□ -1.97
BRCA1P38398 Y_RNA.508-201ENST00000384502 114 ntBASIC2.74□□□□□ -1.97
BRCA1P38398 AL138900.2-201ENST00000434098 156 ntTSL 3 BASIC2.74□□□□□ -1.97
BRCA1P38398 RAB11AP1-201ENST00000442978 646 ntBASIC2.74□□□□□ -1.97
BRCA1P38398 CDC42P1-201ENST00000456658 548 ntBASIC2.74□□□□□ -1.97
BRCA1P38398 AC103975.1-201ENST00000482506 483 ntBASIC2.74□□□□□ -1.97
BRCA1P38398 AC010406.1-201ENST00000507948 555 ntTSL 3 BASIC2.74□□□□□ -1.97
BRCA1P38398 LINC02315-201ENST00000515218 696 ntTSL 5 BASIC2.74□□□□□ -1.97
BRCA1P38398 AC104232.2-201ENST00000519680 769 ntTSL 5 BASIC2.74□□□□□ -1.97
BRCA1P38398 LINC02164-201ENST00000566684 272 ntTSL 3 BASIC2.74□□□□□ -1.97
BRCA1P38398 AC025281.1-201ENST00000567026 265 ntBASIC2.74□□□□□ -1.97
BRCA1P38398 AP000873.2-201ENST00000602381 406 ntTSL 2 BASIC2.74□□□□□ -1.97
BRCA1P38398 AL355810.1-201ENST00000614629 552 ntBASIC2.74□□□□□ -1.97
BRCA1P38398 AL138880.2-201ENST00000616214 239 ntBASIC2.74□□□□□ -1.97
BRCA1P38398 KLRC1-202ENST00000359151 1407 ntAPPRIS P4 TSL 1 (best) BASIC2.74□□□□□ -1.97
BRCA1P38398 CEP83-202ENST00000397807 2737 ntTSL 5 BASIC2.74□□□□□ -1.97
BRCA1P38398 ZNF734P-201ENST00000419494 1534 ntBASIC2.73□□□□□ -1.97
BRCA1P38398 RNU6-335P-201ENST00000364563 113 ntBASIC2.73□□□□□ -1.97
BRCA1P38398 GUCA1C-202ENST00000393963 900 ntTSL 1 (best) BASIC2.73□□□□□ -1.97
BRCA1P38398 AL121978.1-201ENST00000402778 359 ntBASIC2.73□□□□□ -1.97
BRCA1P38398 OFD1P2Y-201ENST00000421895 1149 ntBASIC2.73□□□□□ -1.97
BRCA1P38398 PNRC2P1-201ENST00000423940 420 ntBASIC2.73□□□□□ -1.97
BRCA1P38398 AP000695.2-201ENST00000428667 715 ntTSL 5 BASIC2.73□□□□□ -1.97
BRCA1P38398 AC024597.1-201ENST00000442753 706 ntTSL 5 BASIC2.73□□□□□ -1.97
BRCA1P38398 RNFT1P2-201ENST00000443064 757 ntBASIC2.73□□□□□ -1.97
BRCA1P38398 AL929288.2-201ENST00000446368 407 ntBASIC2.73□□□□□ -1.97
BRCA1P38398 Z99714.1-201ENST00000450463 807 ntBASIC2.73□□□□□ -1.97
BRCA1P38398 AL592161.1-201ENST00000456389 861 ntTSL 3 BASIC2.73□□□□□ -1.97
BRCA1P38398 SNORD13-201ENST00000459299 104 ntBASIC2.73□□□□□ -1.97
BRCA1P38398 AL049830.2-201ENST00000480072 201 ntBASIC2.73□□□□□ -1.97
BRCA1P38398 MTCO3P35-201ENST00000485582 781 ntBASIC2.73□□□□□ -1.97
BRCA1P38398 MGAT4A-209ENST00000495056 683 ntTSL 2 BASIC2.73□□□□□ -1.97
BRCA1P38398 PRELID3BP4-201ENST00000515476 571 ntBASIC2.73□□□□□ -1.97
BRCA1P38398 HSPE1P18-201ENST00000517602 280 ntBASIC2.73□□□□□ -1.97
BRCA1P38398 LIVAR-201ENST00000578633 384 ntTSL 3 BASIC2.73□□□□□ -1.97
BRCA1P38398 LAMTOR5-AS1-203ENST00000585330 463 ntTSL 2 BASIC2.73□□□□□ -1.97
BRCA1P38398 DPRXP5-201ENST00000604662 539 ntBASIC2.73□□□□□ -1.97
BRCA1P38398 AC010738.1-201ENST00000604970 987 ntBASIC2.73□□□□□ -1.97
BRCA1P38398 AC128687.1-201ENST00000605304 619 ntBASIC2.73□□□□□ -1.97
BRCA1P38398 AC009570.1-201ENST00000609599 745 ntBASIC2.73□□□□□ -1.97
BRCA1P38398 AC107871.2-201ENST00000612894 502 ntBASIC2.73□□□□□ -1.97
BRCA1P38398 AC009831.4-201ENST00000620744 325 ntBASIC2.73□□□□□ -1.97
BRCA1P38398 AL163152.1-201ENST00000642001 374 ntBASIC2.73□□□□□ -1.97
BRCA1P38398 HTR2B-201ENST00000258400 2246 ntAPPRIS P1 TSL 1 (best) BASIC2.73□□□□□ -1.97
BRCA1P38398 AC114316.2-202ENST00000502934 2957 ntTSL 2 BASIC2.73□□□□□ -1.97
BRCA1P38398 ZBTB6-201ENST00000373659 4106 ntAPPRIS P1 TSL 1 (best) BASIC2.73□□□□□ -1.97
BRCA1P38398 XIRP2-201ENST00000295237 5246 ntTSL 2 BASIC2.73□□□□□ -1.97
BRCA1P38398 MIR16-2-201ENST00000362117 81 ntBASIC2.73□□□□□ -1.97
BRCA1P38398 RNU6-481P-201ENST00000384194 107 ntBASIC2.73□□□□□ -1.97
BRCA1P38398 AL136372.1-201ENST00000403060 228 ntBASIC2.73□□□□□ -1.97
BRCA1P38398 P4HA2-AS1-201ENST00000417667 839 ntTSL 3 BASIC2.73□□□□□ -1.97
BRCA1P38398 LINC01389-201ENST00000420876 483 ntTSL 3 BASIC2.73□□□□□ -1.97
BRCA1P38398 LINC01317-202ENST00000442026 677 ntTSL 3 BASIC2.73□□□□□ -1.97
BRCA1P38398 HSFY3P-201ENST00000444242 1191 ntBASIC2.73□□□□□ -1.97
BRCA1P38398 LINC01612-201ENST00000504509 469 ntTSL 3 BASIC2.73□□□□□ -1.97
BRCA1P38398 AC012625.1-201ENST00000515153 625 ntTSL 5 BASIC2.73□□□□□ -1.97
BRCA1P38398 AC025300.1-201ENST00000526616 384 ntTSL 3 BASIC2.73□□□□□ -1.97
BRCA1P38398 AP003049.1-201ENST00000529418 457 ntBASIC2.73□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 219.4 ms