Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 LINC01846-201ENST00000505908 651 ntTSL 5 BASIC2.9□□□□□ -1.95
SDC1P18827 POU5F1P7-201ENST00000508759 541 ntBASIC2.9□□□□□ -1.95
SDC1P18827 AC025244.2-201ENST00000509215 422 ntTSL 3 BASIC2.9□□□□□ -1.95
SDC1P18827 HSPE1P23-201ENST00000509838 286 ntBASIC2.9□□□□□ -1.95
SDC1P18827 MTRNR2L5-201ENST00000512524 739 ntAPPRIS P1 BASIC2.9□□□□□ -1.95
SDC1P18827 LINC01608-201ENST00000523557 544 ntTSL 4 BASIC2.9□□□□□ -1.95
SDC1P18827 AC023538.1-201ENST00000534576 736 ntBASIC2.9□□□□□ -1.95
SDC1P18827 ERP27-202ENST00000540097 993 ntTSL 2 BASIC2.9□□□□□ -1.95
SDC1P18827 AC025265.2-201ENST00000551905 478 ntTSL 3 BASIC2.9□□□□□ -1.95
SDC1P18827 CASC16-202ENST00000563844 610 ntTSL 3 BASIC2.9□□□□□ -1.95
SDC1P18827 AL354943.1-201ENST00000572103 781 ntBASIC2.9□□□□□ -1.95
SDC1P18827 AC016866.2-201ENST00000585251 502 ntTSL 2 BASIC2.9□□□□□ -1.95
SDC1P18827 AL353997.4-201ENST00000586196 166 ntBASIC2.9□□□□□ -1.95
SDC1P18827 AL157938.2-201ENST00000587264 894 ntTSL 5 BASIC2.9□□□□□ -1.95
SDC1P18827 AC027514.2-201ENST00000591014 637 ntTSL 3 BASIC2.9□□□□□ -1.95
SDC1P18827 BDH2P1-201ENST00000602288 736 ntBASIC2.9□□□□□ -1.95
SDC1P18827 AC022022.2-201ENST00000602989 360 ntBASIC2.9□□□□□ -1.95
SDC1P18827 AC013244.3-201ENST00000605614 388 ntBASIC2.9□□□□□ -1.95
SDC1P18827 AL590099.1-201ENST00000615276 138 ntBASIC2.9□□□□□ -1.95
SDC1P18827 MIR622-201ENST00000638396 96 ntBASIC2.9□□□□□ -1.95
SDC1P18827 AL158064.1-201ENST00000627044 2242 ntTSL 4 BASIC2.9□□□□□ -1.95
SDC1P18827 SCOC-203ENST00000394203 1999 ntTSL 2 BASIC2.9□□□□□ -1.95
SDC1P18827 SGO1P2-201ENST00000429458 1589 ntBASIC2.9□□□□□ -1.95
SDC1P18827 AL136164.4-201ENST00000625013 2135 ntBASIC2.9□□□□□ -1.95
SDC1P18827 ATF2-221ENST00000538946 1325 ntTSL 5 BASIC2.9□□□□□ -1.95
SDC1P18827 AL079305.1-201ENST00000623159 3008 ntBASIC2.9□□□□□ -1.95
SDC1P18827 ZNF280C-201ENST00000370978 4634 ntAPPRIS P1 TSL 1 (best) BASIC2.89□□□□□ -1.95
SDC1P18827 CCDC82-201ENST00000278520 2941 ntAPPRIS P2 TSL 5 BASIC2.89□□□□□ -1.95
SDC1P18827 UEVLD-208ENST00000535484 1963 ntTSL 2 BASIC2.89□□□□□ -1.95
SDC1P18827 LINC00301-201ENST00000320202 852 ntTSL 2 BASIC2.89□□□□□ -1.95
SDC1P18827 OR5W2-201ENST00000344514 933 ntAPPRIS P1 BASIC2.89□□□□□ -1.95
SDC1P18827 RNU6-50P-201ENST00000362356 103 ntBASIC2.89□□□□□ -1.95
SDC1P18827 RNU6-931P-201ENST00000363850 107 ntBASIC2.89□□□□□ -1.95
SDC1P18827 CD80-202ENST00000383669 771 ntTSL 1 (best) BASIC2.89□□□□□ -1.95
SDC1P18827 TRAJ17-201ENST00000390520 63 ntAPPRIS P1 BASIC2.89□□□□□ -1.95
SDC1P18827 ATP5F1P3-201ENST00000397213 657 ntBASIC2.89□□□□□ -1.95
SDC1P18827 PVALB-202ENST00000404171 422 ntTSL 2 BASIC2.89□□□□□ -1.95
SDC1P18827 RPS3AP25-201ENST00000411660 793 ntBASIC2.89□□□□□ -1.95
SDC1P18827 BEND7P1-201ENST00000422058 457 ntBASIC2.89□□□□□ -1.95
SDC1P18827 AC007271.1-201ENST00000428188 382 ntTSL 3 BASIC2.89□□□□□ -1.95
SDC1P18827 AL139118.1-201ENST00000432707 446 ntTSL 3 BASIC2.89□□□□□ -1.95
SDC1P18827 SNRPEP7-201ENST00000438350 220 ntBASIC2.89□□□□□ -1.95
SDC1P18827 AL117351.1-201ENST00000438864 766 ntBASIC2.89□□□□□ -1.95
SDC1P18827 RAC1P7-201ENST00000445367 377 ntBASIC2.89□□□□□ -1.95
SDC1P18827 AC016751.2-201ENST00000453206 280 ntTSL 5 BASIC2.89□□□□□ -1.95
SDC1P18827 LINC01611-203ENST00000454981 504 ntTSL 3 BASIC2.89□□□□□ -1.95
SDC1P18827 AC010789.1-201ENST00000458489 291 ntTSL 5 BASIC2.89□□□□□ -1.95
SDC1P18827 snoU13.8-201ENST00000458890 104 ntBASIC2.89□□□□□ -1.95
SDC1P18827 C1orf185-202ENST00000467127 747 ntAPPRIS ALT2 TSL 3 BASIC2.89□□□□□ -1.95
SDC1P18827 FAM172BP-201ENST00000487497 1089 ntBASIC2.89□□□□□ -1.95
SDC1P18827 RN7SL283P-201ENST00000489055 303 ntBASIC2.89□□□□□ -1.95
SDC1P18827 AC093534.2-201ENST00000511418 420 ntTSL 3 BASIC2.89□□□□□ -1.95
SDC1P18827 AC105914.1-201ENST00000511798 226 ntBASIC2.89□□□□□ -1.95
SDC1P18827 MTCYBP43-201ENST00000513621 740 ntBASIC2.89□□□□□ -1.95
SDC1P18827 SNORA31.8-201ENST00000516327 108 ntBASIC2.89□□□□□ -1.95
SDC1P18827 RNU6-714P-201ENST00000516963 103 ntBASIC2.89□□□□□ -1.95
SDC1P18827 RPL12P22-201ENST00000519073 490 ntBASIC2.89□□□□□ -1.95
SDC1P18827 DUXAP2-201ENST00000519198 589 ntBASIC2.89□□□□□ -1.95
SDC1P18827 AP003086.2-201ENST00000534168 437 ntTSL 3 BASIC2.89□□□□□ -1.95
SDC1P18827 AC025271.3-201ENST00000563031 255 ntTSL 5 BASIC2.89□□□□□ -1.95
SDC1P18827 MIR5680-201ENST00000577577 84 ntBASIC2.89□□□□□ -1.95
SDC1P18827 MIR4506-201ENST00000584693 77 ntBASIC2.89□□□□□ -1.95
SDC1P18827 AP001029.3-201ENST00000588063 596 ntBASIC2.89□□□□□ -1.95
SDC1P18827 AC009271.1-202ENST00000588803 492 ntTSL 3 BASIC2.89□□□□□ -1.95
SDC1P18827 AL391001.1-201ENST00000602747 715 ntBASIC2.89□□□□□ -1.95
SDC1P18827 AL031281.1-201ENST00000604049 488 ntBASIC2.89□□□□□ -1.95
SDC1P18827 AC245389.1-201ENST00000605141 529 ntBASIC2.89□□□□□ -1.95
SDC1P18827 LINC00310-205ENST00000609062 863 ntTSL 5 BASIC2.89□□□□□ -1.95
SDC1P18827 Metazoa_SRP.117-201ENST00000615106 292 ntBASIC2.89□□□□□ -1.95
SDC1P18827 MIR7112-201ENST00000616126 65 ntBASIC2.89□□□□□ -1.95
SDC1P18827 AC007318.2-201ENST00000620999 243 ntBASIC2.89□□□□□ -1.95
SDC1P18827 TTN-AS1-267ENST00000628826 662 ntTSL 5 BASIC2.89□□□□□ -1.95
SDC1P18827 AC008993.2-201ENST00000631744 806 ntBASIC2.89□□□□□ -1.95
SDC1P18827 CCDC30-212ENST00000507855 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC2.89□□□□□ -1.95
SDC1P18827 KTN1-206ENST00000413890 4473 ntAPPRIS ALT2 TSL 5 BASIC2.89□□□□□ -1.95
SDC1P18827 HDX-201ENST00000297977 6200 ntAPPRIS P1 TSL 1 (best) BASIC2.89□□□□□ -1.95
SDC1P18827 MGAT4C-202ENST00000548651 2159 ntAPPRIS P1 TSL 5 BASIC2.88□□□□□ -1.95
SDC1P18827 ROS1-202ENST00000368508 7435 ntAPPRIS P2 TSL 1 (best) BASIC2.88□□□□□ -1.95
SDC1P18827 NT5C3A-202ENST00000381626 1909 ntAPPRIS ALT1 TSL 5 BASIC2.88□□□□□ -1.95
SDC1P18827 OR9G4-204ENST00000641668 2608 ntAPPRIS P1 BASIC2.88□□□□□ -1.95
SDC1P18827 RNA5-8SP4-201ENST00000365096 150 ntBASIC2.88□□□□□ -1.95
SDC1P18827 AL136372.1-201ENST00000403060 228 ntBASIC2.88□□□□□ -1.95
SDC1P18827 RPS15AP38-201ENST00000413110 372 ntBASIC2.88□□□□□ -1.95
SDC1P18827 TRAPPC2P4-201ENST00000421750 331 ntBASIC2.88□□□□□ -1.95
SDC1P18827 AL357375.1-201ENST00000424274 525 ntTSL 3 BASIC2.88□□□□□ -1.95
SDC1P18827 BX119904.4-201ENST00000424402 301 ntBASIC2.88□□□□□ -1.95
SDC1P18827 LINC01673-201ENST00000426418 468 ntTSL 3 BASIC2.88□□□□□ -1.95
SDC1P18827 AL022396.1-201ENST00000427011 386 ntTSL 3 BASIC2.88□□□□□ -1.95
SDC1P18827 ZFY-AS1-202ENST00000431145 419 ntTSL 3 BASIC2.88□□□□□ -1.95
SDC1P18827 AC004866.2-201ENST00000438285 481 ntBASIC2.88□□□□□ -1.95
SDC1P18827 OR6K5P-201ENST00000447050 945 ntBASIC2.88□□□□□ -1.95
SDC1P18827 MYCBP2-AS1-202ENST00000448470 333 ntTSL 3 BASIC2.88□□□□□ -1.95
SDC1P18827 RPL30P9-201ENST00000465586 330 ntBASIC2.88□□□□□ -1.95
SDC1P18827 RPS27AP1-201ENST00000475545 471 ntBASIC2.88□□□□□ -1.95
SDC1P18827 AC008652.1-201ENST00000505261 469 ntTSL 3 BASIC2.88□□□□□ -1.95
SDC1P18827 HSPD1P15-201ENST00000505573 1122 ntBASIC2.88□□□□□ -1.95
SDC1P18827 HTN1-204ENST00000511674 623 ntAPPRIS P1 TSL 2 BASIC2.88□□□□□ -1.95
SDC1P18827 AC024589.1-201ENST00000512207 263 ntBASIC2.88□□□□□ -1.95
SDC1P18827 AC112673.1-201ENST00000513168 575 ntBASIC2.88□□□□□ -1.95
SDC1P18827 LINC02484-201ENST00000513843 546 ntTSL 5 BASIC2.88□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 80.5 ms