Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 MTCYBP19-201ENST00000517463 1124 ntBASIC1.75□□□□□ -2.13
COL6A3P12111 NTS-203ENST00000551529 801 ntTSL 3 BASIC1.75□□□□□ -2.13
COL6A3P12111 AL049869.2-201ENST00000556634 365 ntTSL 2 BASIC1.75□□□□□ -2.13
COL6A3P12111 AL137847.3-201ENST00000611521 109 ntBASIC1.75□□□□□ -2.13
COL6A3P12111 ZNF720P1-201ENST00000562403 1939 ntBASIC1.75□□□□□ -2.13
COL6A3P12111 SYNE2-212ENST00000554584 20508 ntTSL 5 BASIC1.75□□□□□ -2.13
COL6A3P12111 FRYL-205ENST00000503238 11103 ntAPPRIS P1 TSL 5 BASIC1.75□□□□□ -2.13
COL6A3P12111 CCDC168-201ENST00000322527 21466 ntAPPRIS P1 TSL 3 BASIC1.75□□□□□ -2.13
COL6A3P12111 MT-CO2-201ENST00000361739 684 ntAPPRIS P1 BASIC1.75□□□□□ -2.13
COL6A3P12111 AC092813.2-201ENST00000434540 399 ntTSL 3 BASIC1.75□□□□□ -2.13
COL6A3P12111 AC015720.1-201ENST00000565251 277 ntBASIC1.75□□□□□ -2.13
COL6A3P12111 PSMG2-204ENST00000585331 983 ntTSL 1 (best) BASIC1.75□□□□□ -2.13
COL6A3P12111 RGS5-201ENST00000313961 5862 ntAPPRIS P3 TSL 1 (best) BASIC1.75□□□□□ -2.13
COL6A3P12111 CCDC30-201ENST00000340612 2664 ntAPPRIS P2 TSL 5 BASIC1.75□□□□□ -2.13
COL6A3P12111 FAM35CP-201ENST00000554755 2470 ntBASIC1.74□□□□□ -2.13
COL6A3P12111 USF3-202ENST00000478658 8461 ntAPPRIS P2 TSL 5 BASIC1.74□□□□□ -2.13
COL6A3P12111 RNA5SP344-201ENST00000411081 104 ntBASIC1.74□□□□□ -2.13
COL6A3P12111 AF241725.1-201ENST00000416182 480 ntTSL 3 BASIC1.74□□□□□ -2.13
COL6A3P12111 GZMAP1-201ENST00000503054 631 ntBASIC1.74□□□□□ -2.13
COL6A3P12111 AC109471.1-201ENST00000511631 612 ntBASIC1.74□□□□□ -2.13
COL6A3P12111 AC016573.1-201ENST00000523205 539 ntTSL 3 BASIC1.74□□□□□ -2.13
COL6A3P12111 AL157938.2-203ENST00000589540 931 ntTSL 5 BASIC1.74□□□□□ -2.13
COL6A3P12111 AC021237.1-201ENST00000504175 1643 ntTSL 2 BASIC1.74□□□□□ -2.13
COL6A3P12111 EYS-211ENST00000503581 10589 ntAPPRIS P3 TSL 5 BASIC1.74□□□□□ -2.13
COL6A3P12111 SLC8A1-207ENST00000406785 20987 ntTSL 1 (best) BASIC1.74□□□□□ -2.13
COL6A3P12111 LRRC70-201ENST00000334994 2249 ntAPPRIS P1 TSL 1 (best) BASIC1.74□□□□□ -2.13
COL6A3P12111 AC110774.1-201ENST00000623567 2018 ntBASIC1.74□□□□□ -2.13
COL6A3P12111 LINC00890-202ENST00000569275 4595 ntAPPRIS P1 TSL 1 (best) BASIC1.74□□□□□ -2.13
COL6A3P12111 MIR6073-201ENST00000352083 89 ntBASIC1.74□□□□□ -2.13
COL6A3P12111 COX6CP14-201ENST00000469580 174 ntBASIC1.74□□□□□ -2.13
COL6A3P12111 AC105313.1-201ENST00000509121 353 ntBASIC1.74□□□□□ -2.13
COL6A3P12111 PIH1D2-208ENST00000532211 1103 ntAPPRIS P1 TSL 5 BASIC1.74□□□□□ -2.13
COL6A3P12111 MBNL3-205ENST00000370857 8760 ntTSL 5 BASIC1.74□□□□□ -2.13
COL6A3P12111 Y_RNA.136-201ENST00000363444 102 ntBASIC1.73□□□□□ -2.13
COL6A3P12111 GTPBP8-204ENST00000467752 686 ntTSL 5 BASIC1.73□□□□□ -2.13
COL6A3P12111 SDHAF2-205ENST00000537782 559 ntTSL 4 BASIC1.73□□□□□ -2.13
COL6A3P12111 LINC02490-201ENST00000559915 601 ntTSL 3 BASIC1.73□□□□□ -2.13
COL6A3P12111 LPP-220ENST00000617246 18220 ntAPPRIS P1 TSL 1 (best) BASIC1.73□□□□□ -2.13
COL6A3P12111 ANKRD18EP-201ENST00000405487 2632 ntBASIC1.73□□□□□ -2.13
COL6A3P12111 MTND5P7-201ENST00000413558 1798 ntBASIC1.73□□□□□ -2.13
COL6A3P12111 RNU6-984P-201ENST00000363236 109 ntBASIC1.73□□□□□ -2.13
COL6A3P12111 SNORD88.1-201ENST00000408684 91 ntBASIC1.73□□□□□ -2.13
COL6A3P12111 RPS6P12-201ENST00000432491 726 ntBASIC1.73□□□□□ -2.13
COL6A3P12111 HMGN2P18-201ENST00000450680 270 ntBASIC1.73□□□□□ -2.13
COL6A3P12111 AL139109.1-201ENST00000455491 297 ntBASIC1.73□□□□□ -2.13
COL6A3P12111 snoU13.3-201ENST00000459441 104 ntBASIC1.73□□□□□ -2.13
COL6A3P12111 AP000907.2-201ENST00000530827 353 ntBASIC1.73□□□□□ -2.13
COL6A3P12111 AC107294.3-201ENST00000609211 526 ntBASIC1.73□□□□□ -2.13
COL6A3P12111 ART3-202ENST00000349321 1528 ntAPPRIS P3 TSL 1 (best) BASIC1.73□□□□□ -2.13
COL6A3P12111 OR5T1-202ENST00000641665 1471 ntAPPRIS P1 BASIC1.73□□□□□ -2.13
COL6A3P12111 POLK-217ENST00000515295 1438 ntTSL 1 (best) BASIC1.73□□□□□ -2.13
COL6A3P12111 AC092620.2-201ENST00000458007 744 ntTSL 2 BASIC1.73□□□□□ -2.13
COL6A3P12111 CHRM3-AS2-203ENST00000458325 895 ntTSL 2 BASIC1.73□□□□□ -2.13
COL6A3P12111 AC090819.1-201ENST00000523800 1111 ntBASIC1.73□□□□□ -2.13
COL6A3P12111 RBM12B-AS1-201ENST00000623283 653 ntBASIC1.73□□□□□ -2.13
COL6A3P12111 AKAP9-202ENST00000358100 10309 ntTSL 1 (best) BASIC1.73□□□□□ -2.13
COL6A3P12111 MIR1323-201ENST00000408090 73 ntBASIC1.72□□□□□ -2.13
COL6A3P12111 U3.40-201ENST00000408706 208 ntBASIC1.72□□□□□ -2.13
COL6A3P12111 AC007560.1-201ENST00000426912 237 ntBASIC1.72□□□□□ -2.13
COL6A3P12111 MIR4435-2HG-213ENST00000451884 423 ntTSL 3 BASIC1.72□□□□□ -2.13
COL6A3P12111 AC008885.2-201ENST00000509506 930 ntBASIC1.72□□□□□ -2.13
COL6A3P12111 EGLN3-AS1-201ENST00000555922 308 ntTSL 3 BASIC1.72□□□□□ -2.13
COL6A3P12111 AC112191.3-201ENST00000604371 277 ntBASIC1.72□□□□□ -2.13
COL6A3P12111 RNU6-35P-201ENST00000384530 107 ntBASIC1.72□□□□□ -2.13
COL6A3P12111 AL445183.3-201ENST00000414168 502 ntBASIC1.72□□□□□ -2.13
COL6A3P12111 IFNWP4-201ENST00000453148 294 ntBASIC1.72□□□□□ -2.13
COL6A3P12111 AL121584.1-201ENST00000453972 519 ntTSL 3 BASIC1.72□□□□□ -2.13
COL6A3P12111 AP002345.1-201ENST00000456493 928 ntBASIC1.72□□□□□ -2.13
COL6A3P12111 AL162742.2-201ENST00000472915 244 ntTSL 5 BASIC1.72□□□□□ -2.13
COL6A3P12111 RNU6-405P-201ENST00000516637 110 ntBASIC1.72□□□□□ -2.13
COL6A3P12111 RNU6-467P-201ENST00000517027 110 ntBASIC1.72□□□□□ -2.13
COL6A3P12111 NEB-220ENST00000618972 26307 ntAPPRIS ALT2 TSL 5 BASIC1.72□□□□□ -2.13
COL6A3P12111 Y_RNA.258-201ENST00000364613 105 ntBASIC1.71□□□□□ -2.13
COL6A3P12111 RPL23AP29-201ENST00000397284 453 ntBASIC1.71□□□□□ -2.13
COL6A3P12111 MAMDC2-AS1-203ENST00000420573 339 ntTSL 3 BASIC1.71□□□□□ -2.13
COL6A3P12111 DIAPH2-AS1-202ENST00000445414 606 ntTSL 2 BASIC1.71□□□□□ -2.13
COL6A3P12111 AL162388.1-201ENST00000450912 352 ntBASIC1.71□□□□□ -2.13
COL6A3P12111 LINC02164-201ENST00000566684 272 ntTSL 3 BASIC1.71□□□□□ -2.13
COL6A3P12111 AC009951.2-201ENST00000634873 644 ntTSL 5 BASIC1.71□□□□□ -2.13
COL6A3P12111 AL035409.1-201ENST00000454305 497 ntTSL 2 BASIC1.71□□□□□ -2.14
COL6A3P12111 AC018690.1-201ENST00000608144 626 ntBASIC1.71□□□□□ -2.14
COL6A3P12111 AC073348.1-201ENST00000623002 331 ntBASIC1.71□□□□□ -2.14
COL6A3P12111 CD44-239ENST00000639002 528 ntTSL 1 (best) BASIC1.71□□□□□ -2.14
COL6A3P12111 AP000553.5-201ENST00000641933 54 ntBASIC1.71□□□□□ -2.14
COL6A3P12111 SLC16A7-201ENST00000261187 11777 ntAPPRIS P1 TSL 1 (best) BASIC1.71□□□□□ -2.14
COL6A3P12111 EIF1AXP1-201ENST00000419267 435 ntBASIC1.71□□□□□ -2.14
COL6A3P12111 AL583859.1-201ENST00000455871 335 ntTSL 3 BASIC1.71□□□□□ -2.14
COL6A3P12111 RPS3AP22-201ENST00000488297 769 ntBASIC1.71□□□□□ -2.14
COL6A3P12111 AC026780.2-201ENST00000503489 730 ntTSL 5 BASIC1.71□□□□□ -2.14
COL6A3P12111 TMEM68-218ENST00000617782 2477 ntAPPRIS P1 TSL 5 BASIC1.71□□□□□ -2.14
COL6A3P12111 MUCL1-205ENST00000619042 243 ntAPPRIS ALT2 TSL 5 BASIC1.71□□□□□ -2.14
COL6A3P12111 AC025034.1-201ENST00000552778 1711 ntTSL 3 BASIC1.7□□□□□ -2.14
COL6A3P12111 TMEM27-201ENST00000380342 1578 ntAPPRIS P1 TSL 1 (best) BASIC1.7□□□□□ -2.14
COL6A3P12111 Y_RNA.274-201ENST00000364714 101 ntBASIC1.7□□□□□ -2.14
COL6A3P12111 XKRY2-201ENST00000442362 1093 ntBASIC1.7□□□□□ -2.14
COL6A3P12111 BBIP1-206ENST00000447005 727 ntAPPRIS P1 TSL 2 BASIC1.7□□□□□ -2.14
COL6A3P12111 AC079804.2-201ENST00000490376 200 ntBASIC1.7□□□□□ -2.14
COL6A3P12111 SCOC-206ENST00000506322 687 ntAPPRIS ALT1 TSL 5 BASIC1.7□□□□□ -2.14
COL6A3P12111 LINC01333-201ENST00000508083 724 ntTSL 1 (best) BASIC1.7□□□□□ -2.14
COL6A3P12111 AC124069.1-201ENST00000517454 735 ntTSL 3 BASIC1.7□□□□□ -2.14
Retrieved 100 of 98,524 protein–RNA pairs in 99.8 ms