Protein–RNA interactions for Protein: Q9Y6I4

USP3, Ubiquitin carboxyl-terminal hydrolase 3, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP3Q9Y6I4 MCM9-209ENST00000619706 4822 ntAPPRIS P1 TSL 5 BASIC5.54□□□□□ -1.52
USP3Q9Y6I4 DDX3Y-201ENST00000336079 4445 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
USP3Q9Y6I4 Y_RNA.151-201ENST00000363566 112 ntBASIC5.54□□□□□ -1.52
USP3Q9Y6I4 RNU6-770P-201ENST00000363929 105 ntBASIC5.54□□□□□ -1.52
USP3Q9Y6I4 Y_RNA.222-201ENST00000364264 102 ntBASIC5.54□□□□□ -1.52
USP3Q9Y6I4 RNU6-398P-201ENST00000384143 109 ntBASIC5.54□□□□□ -1.52
USP3Q9Y6I4 MIR105-1-201ENST00000385222 81 ntBASIC5.54□□□□□ -1.52
USP3Q9Y6I4 PPP3R1-202ENST00000409377 684 ntTSL 3 BASIC5.54□□□□□ -1.52
USP3Q9Y6I4 RNU4-34P-201ENST00000410431 124 ntBASIC5.54□□□□□ -1.52
USP3Q9Y6I4 RN7SKP106-201ENST00000410832 272 ntBASIC5.54□□□□□ -1.52
USP3Q9Y6I4 Z86062.2-201ENST00000411442 380 ntTSL 5 BASIC5.54□□□□□ -1.52
USP3Q9Y6I4 MTCO3P19-201ENST00000415864 321 ntBASIC5.54□□□□□ -1.52
USP3Q9Y6I4 AC099677.1-201ENST00000420575 175 ntBASIC5.54□□□□□ -1.52
USP3Q9Y6I4 EI24P4-201ENST00000423683 1078 ntBASIC5.54□□□□□ -1.52
USP3Q9Y6I4 RPL21P91-201ENST00000429231 479 ntBASIC5.54□□□□□ -1.52
USP3Q9Y6I4 AC073063.1-201ENST00000434352 607 ntBASIC5.54□□□□□ -1.52
USP3Q9Y6I4 AL121871.1-201ENST00000443413 436 ntBASIC5.54□□□□□ -1.52
USP3Q9Y6I4 RPL7L1P1-201ENST00000448259 785 ntBASIC5.54□□□□□ -1.52
USP3Q9Y6I4 MTND4LP30-201ENST00000454092 297 ntBASIC5.54□□□□□ -1.52
USP3Q9Y6I4 SPAG11B-206ENST00000458665 444 ntTSL 5 BASIC5.54□□□□□ -1.52
USP3Q9Y6I4 MED28P2-201ENST00000475771 317 ntBASIC5.54□□□□□ -1.52
USP3Q9Y6I4 AC025465.3-201ENST00000510570 311 ntBASIC5.54□□□□□ -1.52
USP3Q9Y6I4 ACA59.1-201ENST00000515966 143 ntBASIC5.54□□□□□ -1.52
USP3Q9Y6I4 AC090124.1-201ENST00000525097 448 ntTSL 3 BASIC5.54□□□□□ -1.52
USP3Q9Y6I4 AC024940.3-201ENST00000538551 316 ntBASIC5.54□□□□□ -1.52
USP3Q9Y6I4 AC007527.1-202ENST00000543347 382 ntTSL 3 BASIC5.54□□□□□ -1.52
USP3Q9Y6I4 AC069437.1-201ENST00000551372 512 ntTSL 4 BASIC5.54□□□□□ -1.52
USP3Q9Y6I4 AL359237.1-201ENST00000554305 826 ntTSL 5 BASIC5.54□□□□□ -1.52
USP3Q9Y6I4 MEG8-215ENST00000555354 469 ntTSL 3 BASIC5.54□□□□□ -1.52
USP3Q9Y6I4 AC104534.1-201ENST00000594558 566 ntTSL 4 BASIC5.54□□□□□ -1.52
USP3Q9Y6I4 SDR42E1P1-201ENST00000611327 477 ntBASIC5.54□□□□□ -1.52
USP3Q9Y6I4 CEP83-202ENST00000397807 2737 ntTSL 5 BASIC5.54□□□□□ -1.52
USP3Q9Y6I4 HDAC9-203ENST00000406072 4102 ntTSL 5 BASIC5.54□□□□□ -1.52
USP3Q9Y6I4 ZNF383-201ENST00000352998 6760 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
USP3Q9Y6I4 TMEM68-218ENST00000617782 2477 ntAPPRIS P1 TSL 5 BASIC5.54□□□□□ -1.52
USP3Q9Y6I4 DNM1P47-203ENST00000571780 12667 ntBASIC5.54□□□□□ -1.52
USP3Q9Y6I4 FAM196B-201ENST00000377365 2999 ntAPPRIS P1 TSL 2 BASIC5.54□□□□□ -1.52
USP3Q9Y6I4 MACF1-232ENST00000567887 24319 ntAPPRIS P5 TSL 5 BASIC5.54□□□□□ -1.52
USP3Q9Y6I4 C4BPAP1-201ENST00000415474 1893 ntBASIC5.54□□□□□ -1.52
USP3Q9Y6I4 GPATCH11-201ENST00000281932 3570 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
USP3Q9Y6I4 PPEF1-202ENST00000361511 2890 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
USP3Q9Y6I4 RYR3-208ENST00000622037 15564 ntAPPRIS ALT2 TSL 5 BASIC5.53□□□□□ -1.52
USP3Q9Y6I4 AC027228.2-201ENST00000567141 2154 ntBASIC5.53□□□□□ -1.52
USP3Q9Y6I4 RAB3GAP1-207ENST00000539493 3161 ntTSL 5 BASIC5.53□□□□□ -1.52
USP3Q9Y6I4 DTHD1-205ENST00000507598 2606 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
USP3Q9Y6I4 DENND4A-201ENST00000431932 5875 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
USP3Q9Y6I4 ERVW-1-201ENST00000493463 2925 ntAPPRIS P1 BASIC5.53□□□□□ -1.52
USP3Q9Y6I4 TEK-205ENST00000615002 4666 ntTSL 5 BASIC5.53□□□□□ -1.52
USP3Q9Y6I4 PIGK-203ENST00000445065 4318 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
USP3Q9Y6I4 OR4E2-202ENST00000641524 2855 ntAPPRIS P1 BASIC5.53□□□□□ -1.52
USP3Q9Y6I4 SNORA17.1-201ENST00000362945 126 ntBASIC5.53□□□□□ -1.52
USP3Q9Y6I4 RNU1-19P-201ENST00000363306 165 ntBASIC5.53□□□□□ -1.52
USP3Q9Y6I4 RNA5SP241-201ENST00000391326 114 ntBASIC5.53□□□□□ -1.52
USP3Q9Y6I4 MIR548H3-201ENST00000408771 118 ntBASIC5.53□□□□□ -1.52
USP3Q9Y6I4 DPPA2P3-201ENST00000411853 655 ntBASIC5.53□□□□□ -1.52
USP3Q9Y6I4 AL590135.1-201ENST00000422215 156 ntBASIC5.53□□□□□ -1.52
USP3Q9Y6I4 ELOCP20-201ENST00000422460 345 ntBASIC5.53□□□□□ -1.52
USP3Q9Y6I4 REREP1Y-201ENST00000422655 198 ntBASIC5.53□□□□□ -1.52
USP3Q9Y6I4 BX276092.3-201ENST00000424182 230 ntBASIC5.53□□□□□ -1.52
USP3Q9Y6I4 AL158071.1-201ENST00000430315 461 ntBASIC5.53□□□□□ -1.52
USP3Q9Y6I4 REREP2Y-201ENST00000439103 200 ntBASIC5.53□□□□□ -1.52
USP3Q9Y6I4 AC091685.1-201ENST00000442436 448 ntTSL 3 BASIC5.53□□□□□ -1.52
USP3Q9Y6I4 AL589765.1-201ENST00000457548 386 ntTSL 2 BASIC5.53□□□□□ -1.52
USP3Q9Y6I4 RPL21P41-201ENST00000459863 264 ntBASIC5.53□□□□□ -1.52
USP3Q9Y6I4 AP000942.1-201ENST00000463969 747 ntBASIC5.53□□□□□ -1.52
USP3Q9Y6I4 FAM107B-218ENST00000479731 570 ntAPPRIS P1 TSL 3 BASIC5.53□□□□□ -1.52
USP3Q9Y6I4 FO393415.2-201ENST00000480085 343 ntBASIC5.53□□□□□ -1.52
USP3Q9Y6I4 AC018437.1-201ENST00000492214 406 ntBASIC5.53□□□□□ -1.52
USP3Q9Y6I4 GZMAP1-201ENST00000503054 631 ntBASIC5.53□□□□□ -1.52
USP3Q9Y6I4 MTND1P19-201ENST00000511780 315 ntBASIC5.53□□□□□ -1.52
USP3Q9Y6I4 SNORA70.11-201ENST00000515987 138 ntBASIC5.53□□□□□ -1.52
USP3Q9Y6I4 SNORA70.13-201ENST00000516116 138 ntBASIC5.53□□□□□ -1.52
USP3Q9Y6I4 RNU6-911P-201ENST00000516523 104 ntBASIC5.53□□□□□ -1.52
USP3Q9Y6I4 RN7SKP277-201ENST00000516895 283 ntBASIC5.53□□□□□ -1.52
USP3Q9Y6I4 AC009435.1-201ENST00000519555 574 ntTSL 4 BASIC5.53□□□□□ -1.52
USP3Q9Y6I4 AC002563.1-201ENST00000535109 451 ntTSL 3 BASIC5.53□□□□□ -1.52
USP3Q9Y6I4 SNHG1-204ENST00000537068 629 ntTSL 5 BASIC5.53□□□□□ -1.52
USP3Q9Y6I4 PYM1-205ENST00000547925 499 ntTSL 3 BASIC5.53□□□□□ -1.52
USP3Q9Y6I4 LINC01580-201ENST00000555255 561 ntTSL 4 BASIC5.53□□□□□ -1.52
USP3Q9Y6I4 AC126323.3-201ENST00000565136 564 ntTSL 4 BASIC5.53□□□□□ -1.52
USP3Q9Y6I4 AC006600.1-201ENST00000572529 153 ntBASIC5.53□□□□□ -1.52
USP3Q9Y6I4 RN7SL290P-201ENST00000578661 300 ntBASIC5.53□□□□□ -1.52
USP3Q9Y6I4 UBL5-207ENST00000590068 390 ntAPPRIS P1 TSL 5 BASIC5.53□□□□□ -1.52
USP3Q9Y6I4 AC008814.1-201ENST00000603797 406 ntBASIC5.53□□□□□ -1.52
USP3Q9Y6I4 AC007619.2-201ENST00000605743 379 ntBASIC5.53□□□□□ -1.52
USP3Q9Y6I4 AC243829.4-202ENST00000610845 410 ntTSL 5 BASIC5.53□□□□□ -1.52
USP3Q9Y6I4 AC130454.1-201ENST00000622948 401 ntBASIC5.53□□□□□ -1.52
USP3Q9Y6I4 AC093495.1-217ENST00000627385 428 ntTSL 5 BASIC5.53□□□□□ -1.52
USP3Q9Y6I4 MIR4496-201ENST00000635896 61 ntBASIC5.53□□□□□ -1.52
USP3Q9Y6I4 OR52A5-201ENST00000307388 3973 ntAPPRIS P1 BASIC5.53□□□□□ -1.52
USP3Q9Y6I4 AP001029.2-203ENST00000589795 4910 ntBASIC5.53□□□□□ -1.52
USP3Q9Y6I4 PCDH11X-202ENST00000361655 4126 ntAPPRIS ALT2 TSL 1 (best) BASIC5.53□□□□□ -1.52
USP3Q9Y6I4 LINC02431-201ENST00000503929 3601 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
USP3Q9Y6I4 OR2L3-202ENST00000641161 2830 ntAPPRIS P1 BASIC5.53□□□□□ -1.52
USP3Q9Y6I4 OR2L3-203ENST00000641649 2846 ntAPPRIS P1 BASIC5.53□□□□□ -1.52
USP3Q9Y6I4 RMST-209ENST00000639542 3269 ntTSL 5 BASIC5.53□□□□□ -1.52
USP3Q9Y6I4 ABCC13-202ENST00000463099 3842 ntBASIC5.53□□□□□ -1.52
USP3Q9Y6I4 ZNF431-201ENST00000311048 13894 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
USP3Q9Y6I4 ZNF181-203ENST00000459757 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC5.53□□□□□ -1.52
USP3Q9Y6I4 POLR2B-213ENST00000639658 3300 ntTSL 5 BASIC5.53□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 124 ms