Protein–RNA interactions for Protein: Q9H9J4

USP42, Ubiquitin carboxyl-terminal hydrolase 42, humanhuman

Known RBP Predictions only

Length 1,324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP42Q9H9J4 STMN1P1-201ENST00000617809 440 ntBASIC2.86□□□□□ -1.95
USP42Q9H9J4 AC092650.2-201ENST00000619984 902 ntBASIC2.86□□□□□ -1.95
USP42Q9H9J4 PLCE1-AS2-213ENST00000620469 432 ntTSL 5 BASIC2.86□□□□□ -1.95
USP42Q9H9J4 SOX2-OT-255ENST00000630150 649 ntTSL 5 BASIC2.86□□□□□ -1.95
USP42Q9H9J4 AL356118.1-201ENST00000635272 1078 ntBASIC2.86□□□□□ -1.95
USP42Q9H9J4 DENND4A-202ENST00000443035 8665 ntTSL 1 (best) BASIC2.86□□□□□ -1.95
USP42Q9H9J4 AC091534.1-201ENST00000548779 1751 ntTSL 2 BASIC2.85□□□□□ -1.95
USP42Q9H9J4 MGAT4C-210ENST00000620241 3194 ntAPPRIS P1 TSL 2 BASIC2.85□□□□□ -1.95
USP42Q9H9J4 AC002543.1-201ENST00000299783 1954 ntBASIC2.85□□□□□ -1.95
USP42Q9H9J4 ATP11C-201ENST00000327569 6115 ntAPPRIS P3 TSL 1 (best) BASIC2.85□□□□□ -1.95
USP42Q9H9J4 RNA5SP88-201ENST00000365560 109 ntBASIC2.85□□□□□ -1.95
USP42Q9H9J4 TAF9BP2-201ENST00000400856 499 ntBASIC2.85□□□□□ -1.95
USP42Q9H9J4 RNA5SP181-201ENST00000410246 98 ntBASIC2.85□□□□□ -1.95
USP42Q9H9J4 ATG3P1-201ENST00000419507 911 ntBASIC2.85□□□□□ -1.95
USP42Q9H9J4 AC005165.1-203ENST00000423689 1281 ntTSL 3 BASIC2.85□□□□□ -1.95
USP42Q9H9J4 MTATP6P11-201ENST00000428071 670 ntBASIC2.85□□□□□ -1.95
USP42Q9H9J4 AP001117.1-201ENST00000428205 609 ntTSL 2 BASIC2.85□□□□□ -1.95
USP42Q9H9J4 AL162725.2-201ENST00000430545 748 ntTSL 5 BASIC2.85□□□□□ -1.95
USP42Q9H9J4 AC092427.1-202ENST00000430569 476 ntBASIC2.85□□□□□ -1.95
USP42Q9H9J4 SETP8-201ENST00000435341 628 ntBASIC2.85□□□□□ -1.95
USP42Q9H9J4 AL354977.1-201ENST00000438147 679 ntTSL 5 BASIC2.85□□□□□ -1.95
USP42Q9H9J4 AC099677.4-201ENST00000446786 380 ntTSL 3 BASIC2.85□□□□□ -1.95
USP42Q9H9J4 AC093422.2-201ENST00000452599 686 ntTSL 2 BASIC2.85□□□□□ -1.95
USP42Q9H9J4 RPL23AP42-201ENST00000471152 471 ntBASIC2.85□□□□□ -1.95
USP42Q9H9J4 AC015908.1-201ENST00000478739 476 ntBASIC2.85□□□□□ -1.95
USP42Q9H9J4 AC106872.3-201ENST00000495104 446 ntBASIC2.85□□□□□ -1.95
USP42Q9H9J4 ARNTL2-AS1-201ENST00000500498 804 ntTSL 1 (best) BASIC2.85□□□□□ -1.95
USP42Q9H9J4 MTCO3P44-201ENST00000510977 541 ntBASIC2.85□□□□□ -1.95
USP42Q9H9J4 RN7SKP219-201ENST00000516825 296 ntBASIC2.85□□□□□ -1.95
USP42Q9H9J4 AC083923.1-201ENST00000523708 376 ntBASIC2.85□□□□□ -1.95
USP42Q9H9J4 AL139021.2-201ENST00000556390 399 ntTSL 3 BASIC2.85□□□□□ -1.95
USP42Q9H9J4 AC027104.1-201ENST00000563702 681 ntBASIC2.85□□□□□ -1.95
USP42Q9H9J4 AC087481.2-201ENST00000565492 330 ntBASIC2.85□□□□□ -1.95
USP42Q9H9J4 AC012254.4-201ENST00000588843 273 ntBASIC2.85□□□□□ -1.95
USP42Q9H9J4 DPRXP5-201ENST00000604662 539 ntBASIC2.85□□□□□ -1.95
USP42Q9H9J4 AC106791.2-201ENST00000604680 391 ntBASIC2.85□□□□□ -1.95
USP42Q9H9J4 AC073387.2-201ENST00000604797 784 ntBASIC2.85□□□□□ -1.95
USP42Q9H9J4 AL359198.2-201ENST00000611836 194 ntBASIC2.85□□□□□ -1.95
USP42Q9H9J4 AC025016.1-201ENST00000616746 682 ntBASIC2.85□□□□□ -1.95
USP42Q9H9J4 ZNF461-214ENST00000618437 774 ntTSL 5 BASIC2.85□□□□□ -1.95
USP42Q9H9J4 MIR219B-201ENST00000637023 88 ntBASIC2.85□□□□□ -1.95
USP42Q9H9J4 AC002546.1-201ENST00000588041 2504 ntBASIC2.84□□□□□ -1.95
USP42Q9H9J4 AC006378.2-201ENST00000623178 2476 ntBASIC2.84□□□□□ -1.95
USP42Q9H9J4 CNIH4-201ENST00000366856 808 ntAPPRIS ALT1 TSL 2 BASIC2.84□□□□□ -1.96
USP42Q9H9J4 SNORA26.7-201ENST00000391288 122 ntBASIC2.84□□□□□ -1.96
USP42Q9H9J4 AL354733.1-203ENST00000417672 495 ntTSL 5 BASIC2.84□□□□□ -1.96
USP42Q9H9J4 SNRPEP4-201ENST00000435815 279 ntBASIC2.84□□□□□ -1.96
USP42Q9H9J4 XKRY-201ENST00000510392 1100 ntBASIC2.84□□□□□ -1.96
USP42Q9H9J4 AC021736.1-201ENST00000521143 563 ntTSL 4 BASIC2.84□□□□□ -1.96
USP42Q9H9J4 AC012413.1-201ENST00000521294 519 ntTSL 2 BASIC2.84□□□□□ -1.96
USP42Q9H9J4 ERHP1-201ENST00000523006 310 ntBASIC2.84□□□□□ -1.96
USP42Q9H9J4 AL353699.1-201ENST00000529078 365 ntTSL 3 BASIC2.84□□□□□ -1.96
USP42Q9H9J4 OR4R2P-201ENST00000530815 597 ntBASIC2.84□□□□□ -1.96
USP42Q9H9J4 REXO2-218ENST00000544827 880 ntTSL 3 BASIC2.84□□□□□ -1.96
USP42Q9H9J4 ETFRF1-208ENST00000556402 874 ntTSL 3 BASIC2.84□□□□□ -1.96
USP42Q9H9J4 AC092474.3-201ENST00000603022 568 ntBASIC2.84□□□□□ -1.96
USP42Q9H9J4 AL137847.3-201ENST00000611521 109 ntBASIC2.84□□□□□ -1.96
USP42Q9H9J4 AP003171.2-202ENST00000634657 355 ntTSL 5 BASIC2.84□□□□□ -1.96
USP42Q9H9J4 OR4G2P-202ENST00000641004 1759 ntBASIC2.83□□□□□ -1.96
USP42Q9H9J4 AC009487.4-201ENST00000624969 3585 ntBASIC2.83□□□□□ -1.96
USP42Q9H9J4 ENSAP3-201ENST00000312710 333 ntBASIC2.83□□□□□ -1.96
USP42Q9H9J4 CD24P4-201ENST00000382840 243 ntBASIC2.83□□□□□ -1.96
USP42Q9H9J4 U8.13-201ENST00000390842 128 ntBASIC2.83□□□□□ -1.96
USP42Q9H9J4 CASP3-203ENST00000393588 677 ntTSL 4 BASIC2.83□□□□□ -1.96
USP42Q9H9J4 RNU6-1077P-201ENST00000410506 102 ntBASIC2.83□□□□□ -1.96
USP42Q9H9J4 AL354733.1-204ENST00000412069 424 ntTSL 5 BASIC2.83□□□□□ -1.96
USP42Q9H9J4 MAMDC2-AS1-203ENST00000420573 339 ntTSL 3 BASIC2.83□□□□□ -1.96
USP42Q9H9J4 AC005160.1-201ENST00000432405 381 ntTSL 3 BASIC2.83□□□□□ -1.96
USP42Q9H9J4 TTTY16-201ENST00000437686 192 ntTSL 1 (best) BASIC2.83□□□□□ -1.96
USP42Q9H9J4 RPL21P2-201ENST00000440049 481 ntBASIC2.83□□□□□ -1.96
USP42Q9H9J4 AC015724.1-201ENST00000478577 156 ntBASIC2.83□□□□□ -1.96
USP42Q9H9J4 AC104108.1-201ENST00000509930 412 ntBASIC2.83□□□□□ -1.96
USP42Q9H9J4 AC104057.1-201ENST00000515547 497 ntBASIC2.83□□□□□ -1.96
USP42Q9H9J4 RNU6-551P-201ENST00000516661 103 ntBASIC2.83□□□□□ -1.96
USP42Q9H9J4 AC104009.1-203ENST00000531304 571 ntTSL 4 BASIC2.83□□□□□ -1.96
USP42Q9H9J4 ITFG1-AS1-202ENST00000565694 494 ntTSL 2 BASIC2.83□□□□□ -1.96
USP42Q9H9J4 AC105137.2-201ENST00000569073 466 ntBASIC2.83□□□□□ -1.96
USP42Q9H9J4 AC128687.1-201ENST00000605304 619 ntBASIC2.83□□□□□ -1.96
USP42Q9H9J4 MIR6766-201ENST00000622641 72 ntBASIC2.83□□□□□ -1.96
USP42Q9H9J4 AL160394.1-201ENST00000624765 724 ntBASIC2.83□□□□□ -1.96
USP42Q9H9J4 AC083865.1-201ENST00000636634 831 ntBASIC2.83□□□□□ -1.96
USP42Q9H9J4 LRRC70-201ENST00000334994 2249 ntAPPRIS P1 TSL 1 (best) BASIC2.83□□□□□ -1.96
USP42Q9H9J4 AC097714.1-201ENST00000511272 1647 ntBASIC2.82□□□□□ -1.96
USP42Q9H9J4 ANKRD20A9P-201ENST00000457997 2978 ntBASIC2.82□□□□□ -1.96
USP42Q9H9J4 TMEM68-218ENST00000617782 2477 ntAPPRIS P1 TSL 5 BASIC2.82□□□□□ -1.96
USP42Q9H9J4 MUC15-205ENST00000529533 2084 ntTSL 1 (best) BASIC2.82□□□□□ -1.96
USP42Q9H9J4 AC007342.9-201ENST00000623877 1385 ntBASIC2.82□□□□□ -1.96
USP42Q9H9J4 RNU6-1339P-201ENST00000363574 91 ntBASIC2.82□□□□□ -1.96
USP42Q9H9J4 U3.37-201ENST00000408528 213 ntBASIC2.82□□□□□ -1.96
USP42Q9H9J4 AC093157.1-203ENST00000416329 713 ntTSL 5 BASIC2.82□□□□□ -1.96
USP42Q9H9J4 RFESDP1-201ENST00000422350 461 ntBASIC2.82□□□□□ -1.96
USP42Q9H9J4 PTP4A1P7-201ENST00000423476 514 ntBASIC2.82□□□□□ -1.96
USP42Q9H9J4 MTATP6P4-201ENST00000427725 675 ntBASIC2.82□□□□□ -1.96
USP42Q9H9J4 TPTE2P1-204ENST00000435256 593 ntBASIC2.82□□□□□ -1.96
USP42Q9H9J4 XKRY2-201ENST00000442362 1093 ntBASIC2.82□□□□□ -1.96
USP42Q9H9J4 RAB11AP1-201ENST00000442978 646 ntBASIC2.82□□□□□ -1.96
USP42Q9H9J4 AL450344.2-201ENST00000455229 614 ntTSL 5 BASIC2.82□□□□□ -1.96
USP42Q9H9J4 AL162742.2-201ENST00000472915 244 ntTSL 5 BASIC2.82□□□□□ -1.96
USP42Q9H9J4 LINC02465-201ENST00000507099 532 ntTSL 4 BASIC2.82□□□□□ -1.96
USP42Q9H9J4 SNHG27-202ENST00000507933 491 ntTSL 2 BASIC2.82□□□□□ -1.96
Retrieved 100 of 98,524 protein–RNA pairs in 100.5 ms