Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 Y_RNA.11-201ENST00000362375 109 ntBASIC5.6□□□□□ -1.51
TRAIPQ9BWF2 RN7SKP95-201ENST00000362860 303 ntBASIC5.6□□□□□ -1.51
TRAIPQ9BWF2 RNU6-715P-201ENST00000365204 103 ntBASIC5.6□□□□□ -1.51
TRAIPQ9BWF2 RNA5SP219-201ENST00000390940 113 ntBASIC5.6□□□□□ -1.51
TRAIPQ9BWF2 RPL37P18-201ENST00000411602 243 ntBASIC5.6□□□□□ -1.51
TRAIPQ9BWF2 NAP1L1P2-201ENST00000414182 1089 ntBASIC5.6□□□□□ -1.51
TRAIPQ9BWF2 RPL7P10-201ENST00000417407 739 ntBASIC5.6□□□□□ -1.51
TRAIPQ9BWF2 AC091390.3-201ENST00000426478 338 ntBASIC5.6□□□□□ -1.51
TRAIPQ9BWF2 RPS6P12-201ENST00000432491 726 ntBASIC5.6□□□□□ -1.51
TRAIPQ9BWF2 RHOT1P3-201ENST00000436571 331 ntBASIC5.6□□□□□ -1.51
TRAIPQ9BWF2 GSTA9P-202ENST00000448991 521 ntTSL 3 BASIC5.6□□□□□ -1.51
TRAIPQ9BWF2 PPP1R2P5-201ENST00000457256 603 ntBASIC5.6□□□□□ -1.51
TRAIPQ9BWF2 RN7SL814P-201ENST00000487715 300 ntBASIC5.6□□□□□ -1.51
TRAIPQ9BWF2 CEACAMP10-202ENST00000495431 496 ntBASIC5.6□□□□□ -1.51
TRAIPQ9BWF2 AC002456.2-201ENST00000509356 380 ntBASIC5.6□□□□□ -1.51
TRAIPQ9BWF2 FTH1P9-201ENST00000513251 355 ntBASIC5.6□□□□□ -1.51
TRAIPQ9BWF2 PANCR-202ENST00000513690 448 ntTSL 2 BASIC5.6□□□□□ -1.51
TRAIPQ9BWF2 RNU4-49P-201ENST00000516080 140 ntBASIC5.6□□□□□ -1.51
TRAIPQ9BWF2 SOX5-AS1-201ENST00000539583 573 ntTSL 4 BASIC5.6□□□□□ -1.51
TRAIPQ9BWF2 LINC02305-201ENST00000554142 476 ntTSL 3 BASIC5.6□□□□□ -1.51
TRAIPQ9BWF2 CLMN-206ENST00000556441 452 ntTSL 5 BASIC5.6□□□□□ -1.51
TRAIPQ9BWF2 AC099793.1-201ENST00000567538 285 ntTSL 3 BASIC5.6□□□□□ -1.51
TRAIPQ9BWF2 AC127024.5-201ENST00000580085 462 ntBASIC5.6□□□□□ -1.51
TRAIPQ9BWF2 MACROD2-IT1-202ENST00000605675 575 ntTSL 5 BASIC5.6□□□□□ -1.51
TRAIPQ9BWF2 AL022345.1-201ENST00000607292 135 ntBASIC5.6□□□□□ -1.51
TRAIPQ9BWF2 AC022017.1-201ENST00000608793 559 ntTSL 4 BASIC5.6□□□□□ -1.51
TRAIPQ9BWF2 AC044839.1-205ENST00000614989 542 ntTSL 5 BASIC5.6□□□□□ -1.51
TRAIPQ9BWF2 RMDN2-AS1-204ENST00000626669 448 ntTSL 5 BASIC5.6□□□□□ -1.51
TRAIPQ9BWF2 TBC1D23-201ENST00000344949 3656 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
TRAIPQ9BWF2 FAT3-201ENST00000409404 19030 ntAPPRIS P1 TSL 5 BASIC5.6□□□□□ -1.51
TRAIPQ9BWF2 SLAIN1-203ENST00000351546 2394 ntTSL 2 BASIC5.6□□□□□ -1.51
TRAIPQ9BWF2 EEF1A1-210ENST00000610520 3447 ntTSL 5 BASIC5.6□□□□□ -1.51
TRAIPQ9BWF2 AC083843.3-201ENST00000623679 2186 ntBASIC5.6□□□□□ -1.51
TRAIPQ9BWF2 SCOC-203ENST00000394203 1999 ntTSL 2 BASIC5.6□□□□□ -1.51
TRAIPQ9BWF2 TRIM69-201ENST00000329464 1901 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
TRAIPQ9BWF2 LRMP-201ENST00000354454 2504 ntAPPRIS P2 TSL 1 (best) BASIC5.59□□□□□ -1.51
TRAIPQ9BWF2 ADGRL2-206ENST00000370721 5023 ntTSL 5 BASIC5.59□□□□□ -1.51
TRAIPQ9BWF2 SLC15A2-201ENST00000295605 2379 ntTSL 2 BASIC5.59□□□□□ -1.51
TRAIPQ9BWF2 FAM46D-202ENST00000538312 3106 ntAPPRIS P1 TSL 2 BASIC5.59□□□□□ -1.51
TRAIPQ9BWF2 RPGRIP1L-212ENST00000621565 6038 ntAPPRIS ALT1 TSL 1 (best) BASIC5.59□□□□□ -1.51
TRAIPQ9BWF2 MRPL35-202ENST00000337109 3727 ntAPPRIS P4 TSL 1 (best) BASIC5.59□□□□□ -1.51
TRAIPQ9BWF2 UBE2D3-233ENST00000618836 3472 ntAPPRIS ALT1 TSL 5 BASIC5.59□□□□□ -1.51
TRAIPQ9BWF2 RNA5SP428-201ENST00000365129 132 ntBASIC5.59□□□□□ -1.51
TRAIPQ9BWF2 RPL32P23-201ENST00000397237 405 ntBASIC5.59□□□□□ -1.51
TRAIPQ9BWF2 Z97832.1-201ENST00000402490 328 ntBASIC5.59□□□□□ -1.51
TRAIPQ9BWF2 USP9YP20-201ENST00000419224 558 ntBASIC5.59□□□□□ -1.51
TRAIPQ9BWF2 AL645937.1-202ENST00000421799 937 ntBASIC5.59□□□□□ -1.51
TRAIPQ9BWF2 AL592045.1-201ENST00000429867 352 ntBASIC5.59□□□□□ -1.51
TRAIPQ9BWF2 GPM6BP2-201ENST00000432046 144 ntBASIC5.59□□□□□ -1.51
TRAIPQ9BWF2 AL049745.1-201ENST00000433953 286 ntBASIC5.59□□□□□ -1.51
TRAIPQ9BWF2 HSPD1P21-201ENST00000436541 245 ntBASIC5.59□□□□□ -1.51
TRAIPQ9BWF2 GPM6BP1-201ENST00000446387 144 ntBASIC5.59□□□□□ -1.51
TRAIPQ9BWF2 AC092162.2-204ENST00000451851 566 ntTSL 4 BASIC5.59□□□□□ -1.51
TRAIPQ9BWF2 RPS29P22-201ENST00000472363 168 ntBASIC5.59□□□□□ -1.51
TRAIPQ9BWF2 RPS4XP13-201ENST00000483219 789 ntBASIC5.59□□□□□ -1.51
TRAIPQ9BWF2 AC083904.1-201ENST00000487828 231 ntBASIC5.59□□□□□ -1.51
TRAIPQ9BWF2 RN7SL244P-201ENST00000493405 297 ntBASIC5.59□□□□□ -1.51
TRAIPQ9BWF2 AC114316.1-201ENST00000511323 278 ntTSL 5 BASIC5.59□□□□□ -1.51
TRAIPQ9BWF2 AC097467.1-201ENST00000513660 370 ntTSL 5 BASIC5.59□□□□□ -1.51
TRAIPQ9BWF2 RN7SKP289-201ENST00000517244 295 ntBASIC5.59□□□□□ -1.51
TRAIPQ9BWF2 RAD21-204ENST00000518055 896 ntTSL 2 BASIC5.59□□□□□ -1.51
TRAIPQ9BWF2 IGKV2D-19-201ENST00000523346 262 ntBASIC5.59□□□□□ -1.51
TRAIPQ9BWF2 AP002444.1-201ENST00000534252 620 ntTSL 3 BASIC5.59□□□□□ -1.51
TRAIPQ9BWF2 RAB11AP2-201ENST00000545905 639 ntBASIC5.59□□□□□ -1.51
TRAIPQ9BWF2 AC026765.1-201ENST00000547876 435 ntTSL 3 BASIC5.59□□□□□ -1.51
TRAIPQ9BWF2 AC021739.4-201ENST00000561417 569 ntTSL 4 BASIC5.59□□□□□ -1.51
TRAIPQ9BWF2 AC233702.9-201ENST00000581528 203 ntBASIC5.59□□□□□ -1.51
TRAIPQ9BWF2 AC103987.2-201ENST00000583436 417 ntTSL 2 BASIC5.59□□□□□ -1.51
TRAIPQ9BWF2 AC093227.2-201ENST00000589357 285 ntBASIC5.59□□□□□ -1.51
TRAIPQ9BWF2 AC020910.2-201ENST00000603635 610 ntBASIC5.59□□□□□ -1.51
TRAIPQ9BWF2 AC011626.1-201ENST00000604710 562 ntBASIC5.59□□□□□ -1.51
TRAIPQ9BWF2 AC007497.1-201ENST00000610421 561 ntBASIC5.59□□□□□ -1.51
TRAIPQ9BWF2 AC087385.3-201ENST00000620477 187 ntBASIC5.59□□□□□ -1.51
TRAIPQ9BWF2 DLX6-AS1_1.1-201ENST00000621599 180 ntBASIC5.59□□□□□ -1.51
TRAIPQ9BWF2 AC048347.1-201ENST00000624621 427 ntBASIC5.59□□□□□ -1.51
TRAIPQ9BWF2 Z99571.1-201ENST00000636677 394 ntBASIC5.59□□□□□ -1.51
TRAIPQ9BWF2 LRRC39-201ENST00000342895 1881 ntAPPRIS P1 TSL 5 BASIC5.59□□□□□ -1.51
TRAIPQ9BWF2 AC010132.3-201ENST00000442788 2430 ntAPPRIS P5 TSL 5 BASIC5.59□□□□□ -1.51
TRAIPQ9BWF2 EHBP1-202ENST00000405015 4108 ntAPPRIS ALT2 TSL 2 BASIC5.59□□□□□ -1.51
TRAIPQ9BWF2 FOXP1-IT1-201ENST00000498714 3539 ntTSL 2 BASIC5.59□□□□□ -1.51
TRAIPQ9BWF2 CCDC121-201ENST00000324364 2342 ntAPPRIS P3 TSL 1 (best) BASIC5.59□□□□□ -1.51
TRAIPQ9BWF2 ZNF525-202ENST00000474037 3890 ntAPPRIS P1 TSL 5 BASIC5.59□□□□□ -1.52
TRAIPQ9BWF2 ZBTB38-220ENST00000514251 7683 ntAPPRIS P1 TSL 2 BASIC5.59□□□□□ -1.52
TRAIPQ9BWF2 ARID2-206ENST00000457135 4356 ntTSL 1 (best) BASIC5.59□□□□□ -1.52
TRAIPQ9BWF2 PP2D1-202ENST00000389050 2151 ntAPPRIS P1 TSL 5 BASIC5.59□□□□□ -1.52
TRAIPQ9BWF2 NCOA3-201ENST00000371997 6750 ntAPPRIS ALT2 TSL 1 (best) BASIC5.59□□□□□ -1.52
TRAIPQ9BWF2 RNMT-209ENST00000592764 4108 ntTSL 2 BASIC5.59□□□□□ -1.52
TRAIPQ9BWF2 RAB23-201ENST00000317483 2546 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
TRAIPQ9BWF2 ADGRL3-217ENST00000514591 6297 ntAPPRIS P2 TSL 5 BASIC5.58□□□□□ -1.52
TRAIPQ9BWF2 PLCB1-210ENST00000612075 6576 ntTSL 5 BASIC5.58□□□□□ -1.52
TRAIPQ9BWF2 RCOR3-201ENST00000367005 4246 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
TRAIPQ9BWF2 SDHC-202ENST00000367975 13566 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
TRAIPQ9BWF2 FANCD2-202ENST00000383807 5102 ntAPPRIS ALT2 TSL 1 (best) BASIC5.58□□□□□ -1.52
TRAIPQ9BWF2 KIF23-206ENST00000558585 2296 ntTSL 2 BASIC5.58□□□□□ -1.52
TRAIPQ9BWF2 TTC3-204ENST00000399017 10363 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
TRAIPQ9BWF2 TJP1-202ENST00000356107 6747 ntAPPRIS ALT2 TSL 5 BASIC5.58□□□□□ -1.52
TRAIPQ9BWF2 Z95331.1-201ENST00000623075 23112 ntBASIC5.58□□□□□ -1.52
TRAIPQ9BWF2 SNORD113-7-201ENST00000363762 77 ntBASIC5.58□□□□□ -1.52
TRAIPQ9BWF2 SNORD81.2-201ENST00000365153 76 ntBASIC5.58□□□□□ -1.52
TRAIPQ9BWF2 EIF4E2P1-201ENST00000393781 255 ntBASIC5.58□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 88 ms