Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 AC104435.1-201ENST00000483483 166 ntBASIC1.58□□□□□ -2.16
VPS13AQ96RL7 AC090255.1-201ENST00000495779 349 ntBASIC1.58□□□□□ -2.16
VPS13AQ96RL7 AL121821.2-201ENST00000556081 394 ntBASIC1.58□□□□□ -2.16
VPS13AQ96RL7 LINC02490-201ENST00000559915 601 ntTSL 3 BASIC1.58□□□□□ -2.16
VPS13AQ96RL7 AC099778.2-201ENST00000610904 211 ntBASIC1.58□□□□□ -2.16
VPS13AQ96RL7 AC008568.2-201ENST00000623862 2313 ntBASIC1.58□□□□□ -2.16
VPS13AQ96RL7 MIPOL1-203ENST00000537471 5954 ntAPPRIS P1 TSL 5 BASIC1.58□□□□□ -2.16
VPS13AQ96RL7 MTCO1P14-201ENST00000441695 1559 ntBASIC1.58□□□□□ -2.16
VPS13AQ96RL7 AL138785.1-201ENST00000425821 331 ntBASIC1.58□□□□□ -2.16
VPS13AQ96RL7 AC109486.1-201ENST00000486833 374 ntBASIC1.58□□□□□ -2.16
VPS13AQ96RL7 AC093025.1-201ENST00000547795 569 ntTSL 2 BASIC1.58□□□□□ -2.16
VPS13AQ96RL7 PSMA4-205ENST00000558281 773 ntTSL 3 BASIC1.58□□□□□ -2.16
VPS13AQ96RL7 AC105339.2-201ENST00000558342 1091 ntTSL 3 BASIC1.58□□□□□ -2.16
VPS13AQ96RL7 AC090751.1-201ENST00000566966 267 ntBASIC1.58□□□□□ -2.16
VPS13AQ96RL7 AC013444.2-201ENST00000603317 787 ntBASIC1.58□□□□□ -2.16
VPS13AQ96RL7 AC092159.4-201ENST00000624944 550 ntBASIC1.58□□□□□ -2.16
VPS13AQ96RL7 AC011139.1-202ENST00000637744 563 ntTSL 5 BASIC1.58□□□□□ -2.16
VPS13AQ96RL7 AC025539.1-201ENST00000515343 4019 ntTSL 2 BASIC1.58□□□□□ -2.16
VPS13AQ96RL7 CHD9-218ENST00000566029 13110 ntAPPRIS P1 TSL 1 (best) BASIC1.58□□□□□ -2.16
VPS13AQ96RL7 FSD1L-201ENST00000374707 7062 ntTSL 1 (best) BASIC1.58□□□□□ -2.16
VPS13AQ96RL7 CHD1-201ENST00000284049 6457 ntAPPRIS P1 TSL 1 (best) BASIC1.58□□□□□ -2.16
VPS13AQ96RL7 RGS18-201ENST00000367460 2150 ntAPPRIS P1 TSL 1 (best) BASIC1.57□□□□□ -2.16
VPS13AQ96RL7 CYSLTR1-201ENST00000373304 2576 ntAPPRIS P1 TSL 1 (best) BASIC1.57□□□□□ -2.16
VPS13AQ96RL7 AL354695.1-201ENST00000427935 228 ntBASIC1.57□□□□□ -2.16
VPS13AQ96RL7 ZMYM4-AS1-201ENST00000432683 459 ntTSL 2 BASIC1.57□□□□□ -2.16
VPS13AQ96RL7 AC068544.1-201ENST00000635064 248 ntTSL 5 BASIC1.57□□□□□ -2.16
VPS13AQ96RL7 AC098798.1-201ENST00000503998 1447 ntTSL 5 BASIC1.57□□□□□ -2.16
VPS13AQ96RL7 TRAPPC13-208ENST00000505553 1410 ntAPPRIS ALT1 TSL 1 (best) BASIC1.57□□□□□ -2.16
VPS13AQ96RL7 FAM35CP-201ENST00000554755 2470 ntBASIC1.57□□□□□ -2.16
VPS13AQ96RL7 MUC15-201ENST00000281268 2968 ntTSL 5 BASIC1.57□□□□□ -2.16
VPS13AQ96RL7 RNA5SP457-201ENST00000363657 124 ntBASIC1.57□□□□□ -2.16
VPS13AQ96RL7 RNU4-13P-201ENST00000364019 141 ntBASIC1.57□□□□□ -2.16
VPS13AQ96RL7 RNA5SP139-201ENST00000364340 117 ntBASIC1.57□□□□□ -2.16
VPS13AQ96RL7 AL590664.1-201ENST00000448065 339 ntBASIC1.57□□□□□ -2.16
VPS13AQ96RL7 MTND1P18-201ENST00000448191 573 ntBASIC1.57□□□□□ -2.16
VPS13AQ96RL7 AC114801.2-201ENST00000503825 781 ntBASIC1.57□□□□□ -2.16
VPS13AQ96RL7 AC034102.8-201ENST00000615146 484 ntBASIC1.57□□□□□ -2.16
VPS13AQ96RL7 CFL2-202ENST00000341223 3131 ntAPPRIS P1 TSL 1 (best) BASIC1.57□□□□□ -2.16
VPS13AQ96RL7 TRAPPC13-204ENST00000438419 1437 ntAPPRIS P4 TSL 1 (best) BASIC1.57□□□□□ -2.16
VPS13AQ96RL7 BTBD10P2-201ENST00000404779 676 ntBASIC1.57□□□□□ -2.16
VPS13AQ96RL7 BX510359.4-201ENST00000423750 193 ntBASIC1.57□□□□□ -2.16
VPS13AQ96RL7 HMGN2P19-201ENST00000425149 265 ntBASIC1.57□□□□□ -2.16
VPS13AQ96RL7 NMTRQ-TTG12-1-201ENST00000467595 72 ntBASIC1.57□□□□□ -2.16
VPS13AQ96RL7 GLYCAM1-201ENST00000546596 285 ntBASIC1.57□□□□□ -2.16
VPS13AQ96RL7 AL137100.2-201ENST00000555786 315 ntBASIC1.57□□□□□ -2.16
VPS13AQ96RL7 OR4G11P-202ENST00000642116 1414 ntBASIC1.56□□□□□ -2.16
VPS13AQ96RL7 MAP3K2-203ENST00000409947 10992 ntAPPRIS P1 TSL 1 (best) BASIC1.56□□□□□ -2.16
VPS13AQ96RL7 SNORA51.12-201ENST00000384448 134 ntBASIC1.56□□□□□ -2.16
VPS13AQ96RL7 RPS6P12-201ENST00000432491 726 ntBASIC1.56□□□□□ -2.16
VPS13AQ96RL7 HMGN1P8-201ENST00000463578 288 ntBASIC1.56□□□□□ -2.16
VPS13AQ96RL7 AC011979.1-201ENST00000472300 483 ntBASIC1.56□□□□□ -2.16
VPS13AQ96RL7 RNA5SP337-201ENST00000517007 109 ntBASIC1.56□□□□□ -2.16
VPS13AQ96RL7 AC019176.1-201ENST00000518519 225 ntBASIC1.56□□□□□ -2.16
VPS13AQ96RL7 LIVAR-201ENST00000578633 384 ntTSL 3 BASIC1.56□□□□□ -2.16
VPS13AQ96RL7 RN7SL793P-201ENST00000583259 296 ntBASIC1.56□□□□□ -2.16
VPS13AQ96RL7 OR6C3-203ENST00000641740 1093 ntAPPRIS P1 BASIC1.56□□□□□ -2.16
VPS13AQ96RL7 AC093775.1-201ENST00000624154 1868 ntBASIC1.56□□□□□ -2.16
VPS13AQ96RL7 AC093084.1-201ENST00000424233 687 ntBASIC1.56□□□□□ -2.16
VPS13AQ96RL7 SLC7A11-AS1-201ENST00000510066 817 ntTSL 2 BASIC1.56□□□□□ -2.16
VPS13AQ96RL7 RNU6-826P-201ENST00000516827 104 ntBASIC1.56□□□□□ -2.16
VPS13AQ96RL7 AC034268.2-201ENST00000571784 482 ntBASIC1.56□□□□□ -2.16
VPS13AQ96RL7 AC068944.2-201ENST00000610373 403 ntBASIC1.56□□□□□ -2.16
VPS13AQ96RL7 VIS1.1-201ENST00000610517 203 ntBASIC1.56□□□□□ -2.16
VPS13AQ96RL7 ANGPTL3-201ENST00000371129 2805 ntAPPRIS P1 TSL 1 (best) BASIC1.56□□□□□ -2.16
VPS13AQ96RL7 USP9Y-201ENST00000338981 10036 ntAPPRIS P1 TSL 1 (best) BASIC1.55□□□□□ -2.16
VPS13AQ96RL7 RNA5SP257-201ENST00000363023 116 ntBASIC1.55□□□□□ -2.16
VPS13AQ96RL7 MTND4P13-201ENST00000402078 1023 ntBASIC1.55□□□□□ -2.16
VPS13AQ96RL7 AC005517.2-201ENST00000424673 553 ntBASIC1.55□□□□□ -2.16
VPS13AQ96RL7 AC027673.1-201ENST00000456245 405 ntBASIC1.55□□□□□ -2.16
VPS13AQ96RL7 AL049830.2-201ENST00000480072 201 ntBASIC1.55□□□□□ -2.16
VPS13AQ96RL7 AP003049.2-202ENST00000532929 803 ntTSL 3 BASIC1.55□□□□□ -2.16
VPS13AQ96RL7 EYS-204ENST00000370621 10485 ntAPPRIS ALT2 TSL 1 (best) BASIC1.55□□□□□ -2.16
VPS13AQ96RL7 AL136985.1-201ENST00000424592 395 ntTSL 3 BASIC1.55□□□□□ -2.16
VPS13AQ96RL7 AC098617.1-218ENST00000628836 624 ntTSL 5 BASIC1.55□□□□□ -2.16
VPS13AQ96RL7 Clostridiales-1.2-201ENST00000636724 160 ntBASIC1.55□□□□□ -2.16
VPS13AQ96RL7 AC110774.1-201ENST00000623567 2018 ntBASIC1.55□□□□□ -2.16
VPS13AQ96RL7 AC234781.2-201ENST00000426370 994 ntBASIC1.55□□□□□ -2.16
VPS13AQ96RL7 MTCO3P30-201ENST00000426425 670 ntBASIC1.55□□□□□ -2.16
VPS13AQ96RL7 NEK4P1-201ENST00000433383 879 ntBASIC1.55□□□□□ -2.16
VPS13AQ96RL7 AL354977.1-201ENST00000438147 679 ntTSL 5 BASIC1.55□□□□□ -2.16
VPS13AQ96RL7 AC108078.1-201ENST00000508073 725 ntBASIC1.55□□□□□ -2.16
VPS13AQ96RL7 AC011824.2-201ENST00000579896 579 ntTSL 4 BASIC1.55□□□□□ -2.16
VPS13AQ96RL7 AL122034.1-201ENST00000427609 497 ntTSL 2 BASIC1.54□□□□□ -2.16
VPS13AQ96RL7 AC103879.1-201ENST00000503093 255 ntTSL 2 BASIC1.54□□□□□ -2.16
VPS13AQ96RL7 AC121154.1-201ENST00000507299 430 ntTSL 3 BASIC1.54□□□□□ -2.16
VPS13AQ96RL7 CD69-203ENST00000536709 1020 ntTSL 2 BASIC1.54□□□□□ -2.16
VPS13AQ96RL7 CR936218.1-201ENST00000570454 304 ntTSL 2 BASIC1.54□□□□□ -2.16
VPS13AQ96RL7 AC243773.3-201ENST00000613270 256 ntBASIC1.54□□□□□ -2.16
VPS13AQ96RL7 EYS-202ENST00000342421 2168 ntTSL 1 (best) BASIC1.54□□□□□ -2.16
VPS13AQ96RL7 MIR517C-201ENST00000385103 95 ntBASIC1.54□□□□□ -2.16
VPS13AQ96RL7 AL022400.1-201ENST00000423946 935 ntBASIC1.54□□□□□ -2.16
VPS13AQ96RL7 RPL21P2-201ENST00000440049 481 ntBASIC1.54□□□□□ -2.16
VPS13AQ96RL7 COX6CP14-201ENST00000469580 174 ntBASIC1.54□□□□□ -2.16
VPS13AQ96RL7 ABI1P1-201ENST00000603375 1120 ntBASIC1.54□□□□□ -2.16
VPS13AQ96RL7 AC087468.1-201ENST00000604365 630 ntBASIC1.54□□□□□ -2.16
VPS13AQ96RL7 SERPINI2-201ENST00000264677 1678 ntAPPRIS P1 TSL 1 (best) BASIC1.54□□□□□ -2.16
VPS13AQ96RL7 DEFB109C-201ENST00000382575 264 ntBASIC1.53□□□□□ -2.16
VPS13AQ96RL7 DEFB109B-201ENST00000382656 264 ntBASIC1.53□□□□□ -2.16
VPS13AQ96RL7 AL645568.3-201ENST00000433683 316 ntBASIC1.53□□□□□ -2.16
VPS13AQ96RL7 AC078918.1-201ENST00000498515 228 ntBASIC1.53□□□□□ -2.16
Retrieved 100 of 98,524 protein–RNA pairs in 96.8 ms