Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 SMIM24-204ENST00000591708 660 ntAPPRIS ALT2 TSL 2 BASIC4.26□□□□□ -1.73
CCDC140Q96MF4 AC011445.2-201ENST00000599274 173 ntBASIC4.26□□□□□ -1.73
CCDC140Q96MF4 AC107031.1-201ENST00000604939 347 ntTSL 2 BASIC4.26□□□□□ -1.73
CCDC140Q96MF4 AC123912.5-201ENST00000605470 343 ntBASIC4.26□□□□□ -1.73
CCDC140Q96MF4 AC005014.2-201ENST00000607795 599 ntBASIC4.26□□□□□ -1.73
CCDC140Q96MF4 RN7SL787P-201ENST00000613000 284 ntBASIC4.26□□□□□ -1.73
CCDC140Q96MF4 LINC01002-206ENST00000631772 539 ntTSL 4 BASIC4.26□□□□□ -1.73
CCDC140Q96MF4 DNAH6-202ENST00000389394 12795 ntAPPRIS P1 TSL 5 BASIC4.26□□□□□ -1.73
CCDC140Q96MF4 ZNF81-202ENST00000338637 7859 ntAPPRIS P1 TSL 3 BASIC4.26□□□□□ -1.73
CCDC140Q96MF4 SCN2A-201ENST00000283256 8660 ntAPPRIS P5 TSL 1 (best) BASIC4.26□□□□□ -1.73
CCDC140Q96MF4 ZNF559-201ENST00000317221 2732 ntTSL 2 BASIC4.26□□□□□ -1.73
CCDC140Q96MF4 DMTF1-204ENST00000413276 3548 ntTSL 5 BASIC4.26□□□□□ -1.73
CCDC140Q96MF4 ARHGEF3-203ENST00000413728 3992 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
CCDC140Q96MF4 DGKH-206ENST00000536612 3957 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
CCDC140Q96MF4 MCMDC2-201ENST00000313616 2043 ntTSL 2 BASIC4.26□□□□□ -1.73
CCDC140Q96MF4 ADAMDEC1-204ENST00000522298 2044 ntAPPRIS ALT2 TSL 2 BASIC4.26□□□□□ -1.73
CCDC140Q96MF4 ADAM18-202ENST00000379866 2314 ntAPPRIS ALT2 TSL 1 (best) BASIC4.26□□□□□ -1.73
CCDC140Q96MF4 OR2J3-202ENST00000641151 3297 ntAPPRIS P1 BASIC4.26□□□□□ -1.73
CCDC140Q96MF4 ZNF24-202ENST00000399061 6282 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
CCDC140Q96MF4 AL121594.3-201ENST00000557565 3857 ntAPPRIS P1 TSL 2 BASIC4.25□□□□□ -1.73
CCDC140Q96MF4 PLSCR5-201ENST00000443512 1969 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
CCDC140Q96MF4 PLS3-201ENST00000289290 2277 ntTSL 2 BASIC4.25□□□□□ -1.73
CCDC140Q96MF4 ABCC13-202ENST00000463099 3842 ntBASIC4.25□□□□□ -1.73
CCDC140Q96MF4 PCDH11X-202ENST00000361655 4126 ntAPPRIS ALT2 TSL 1 (best) BASIC4.25□□□□□ -1.73
CCDC140Q96MF4 KLHL4-202ENST00000373119 5818 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
CCDC140Q96MF4 ZNF26-201ENST00000328654 17601 ntAPPRIS P3 TSL 1 (best) BASIC4.25□□□□□ -1.73
CCDC140Q96MF4 TET1-201ENST00000373644 9288 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
CCDC140Q96MF4 Y_RNA.144-201ENST00000363521 113 ntBASIC4.25□□□□□ -1.73
CCDC140Q96MF4 RN7SKP69-201ENST00000365390 305 ntBASIC4.25□□□□□ -1.73
CCDC140Q96MF4 IGLV4-3-201ENST00000390318 403 ntAPPRIS P1 BASIC4.25□□□□□ -1.73
CCDC140Q96MF4 PPIAP9-201ENST00000403866 498 ntBASIC4.25□□□□□ -1.73
CCDC140Q96MF4 MIR1290-201ENST00000408735 78 ntBASIC4.25□□□□□ -1.73
CCDC140Q96MF4 NDUFB4P7-201ENST00000423198 363 ntBASIC4.25□□□□□ -1.73
CCDC140Q96MF4 AC018865.2-201ENST00000423631 129 ntBASIC4.25□□□□□ -1.73
CCDC140Q96MF4 USMG5P1-201ENST00000425964 177 ntBASIC4.25□□□□□ -1.73
CCDC140Q96MF4 LINC02257-202ENST00000433576 720 ntTSL 5 BASIC4.25□□□□□ -1.73
CCDC140Q96MF4 AC092813.2-201ENST00000434540 399 ntTSL 3 BASIC4.25□□□□□ -1.73
CCDC140Q96MF4 AL390961.1-201ENST00000446557 319 ntTSL 2 BASIC4.25□□□□□ -1.73
CCDC140Q96MF4 LINC01880-201ENST00000446593 561 ntTSL 4 BASIC4.25□□□□□ -1.73
CCDC140Q96MF4 MTND5P22-201ENST00000458380 195 ntBASIC4.25□□□□□ -1.73
CCDC140Q96MF4 AC008571.1-201ENST00000467232 300 ntBASIC4.25□□□□□ -1.73
CCDC140Q96MF4 RPS20P22-201ENST00000473700 357 ntBASIC4.25□□□□□ -1.73
CCDC140Q96MF4 CLEC19A-204ENST00000493231 557 ntTSL 3 BASIC4.25□□□□□ -1.73
CCDC140Q96MF4 CEACAMP10-202ENST00000495431 496 ntBASIC4.25□□□□□ -1.73
CCDC140Q96MF4 AC096711.1-201ENST00000510967 347 ntTSL 5 BASIC4.25□□□□□ -1.73
CCDC140Q96MF4 AC091912.1-201ENST00000511351 248 ntBASIC4.25□□□□□ -1.73
CCDC140Q96MF4 RNU6-264P-201ENST00000517134 104 ntBASIC4.25□□□□□ -1.73
CCDC140Q96MF4 MAL2-201ENST00000522112 573 ntTSL 4 BASIC4.25□□□□□ -1.73
CCDC140Q96MF4 AP003122.3-201ENST00000526316 255 ntBASIC4.25□□□□□ -1.73
CCDC140Q96MF4 AC113192.5-201ENST00000528779 486 ntTSL 2 BASIC4.25□□□□□ -1.73
CCDC140Q96MF4 AC084851.1-201ENST00000529105 249 ntBASIC4.25□□□□□ -1.73
CCDC140Q96MF4 AF099810.1-201ENST00000554219 525 ntTSL 3 BASIC4.25□□□□□ -1.73
CCDC140Q96MF4 AC010653.1-201ENST00000571108 881 ntBASIC4.25□□□□□ -1.73
CCDC140Q96MF4 MIR1273E-201ENST00000581165 102 ntBASIC4.25□□□□□ -1.73
CCDC140Q96MF4 AC011444.3-201ENST00000588342 325 ntTSL 3 BASIC4.25□□□□□ -1.73
CCDC140Q96MF4 AP000769.2-201ENST00000602344 396 ntBASIC4.25□□□□□ -1.73
CCDC140Q96MF4 Metazoa_SRP.130-201ENST00000622625 267 ntBASIC4.25□□□□□ -1.73
CCDC140Q96MF4 ADGRL2-222ENST00000627151 5789 ntTSL 5 BASIC4.25□□□□□ -1.73
CCDC140Q96MF4 ATF2-201ENST00000264110 4176 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
CCDC140Q96MF4 ALB-202ENST00000401494 1659 ntTSL 5 BASIC4.25□□□□□ -1.73
CCDC140Q96MF4 MME-201ENST00000360490 2360 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
CCDC140Q96MF4 IFI16-208ENST00000448393 2245 ntAPPRIS ALT2 TSL 5 BASIC4.25□□□□□ -1.73
CCDC140Q96MF4 OR2A7-202ENST00000641841 2062 ntAPPRIS P1 BASIC4.25□□□□□ -1.73
CCDC140Q96MF4 ZNF93-201ENST00000343769 2648 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
CCDC140Q96MF4 IFIT2-203ENST00000638108 3703 ntAPPRIS P2 TSL 5 BASIC4.24□□□□□ -1.73
CCDC140Q96MF4 CFH-201ENST00000359637 1454 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
CCDC140Q96MF4 SLITRK4-202ENST00000356928 3074 ntAPPRIS P1 TSL 2 BASIC4.24□□□□□ -1.73
CCDC140Q96MF4 DDX3Y-201ENST00000336079 4445 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
CCDC140Q96MF4 VCAN-201ENST00000265077 12625 ntAPPRIS P3 TSL 1 (best) BASIC4.24□□□□□ -1.73
CCDC140Q96MF4 NRXN1-242ENST00000635519 3553 ntTSL 5 BASIC4.24□□□□□ -1.73
CCDC140Q96MF4 PFKFB2-202ENST00000367080 7094 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
CCDC140Q96MF4 RNU6-600P-201ENST00000362524 99 ntBASIC4.24□□□□□ -1.73
CCDC140Q96MF4 RNU6-37P-201ENST00000362692 107 ntBASIC4.24□□□□□ -1.73
CCDC140Q96MF4 RNA5SP234-201ENST00000363916 119 ntBASIC4.24□□□□□ -1.73
CCDC140Q96MF4 RNU6-11P-201ENST00000364234 107 ntBASIC4.24□□□□□ -1.73
CCDC140Q96MF4 SNORA7.2-201ENST00000364446 145 ntBASIC4.24□□□□□ -1.73
CCDC140Q96MF4 RNU6-7-201ENST00000364784 107 ntBASIC4.24□□□□□ -1.73
CCDC140Q96MF4 RNU6-8-201ENST00000365467 107 ntBASIC4.24□□□□□ -1.73
CCDC140Q96MF4 Y_RNA.364-201ENST00000365532 101 ntBASIC4.24□□□□□ -1.73
CCDC140Q96MF4 RNU6-25P-201ENST00000383873 107 ntBASIC4.24□□□□□ -1.73
CCDC140Q96MF4 RNU6-1-201ENST00000383898 107 ntBASIC4.24□□□□□ -1.73
CCDC140Q96MF4 RNU6-48P-201ENST00000384161 107 ntBASIC4.24□□□□□ -1.73
CCDC140Q96MF4 RNU6-36P-201ENST00000384172 107 ntBASIC4.24□□□□□ -1.73
CCDC140Q96MF4 RNU6-4P-201ENST00000384205 107 ntBASIC4.24□□□□□ -1.73
CCDC140Q96MF4 RNU6-5P-201ENST00000384238 107 ntBASIC4.24□□□□□ -1.73
CCDC140Q96MF4 RNU6-842P-201ENST00000384269 107 ntBASIC4.24□□□□□ -1.73
CCDC140Q96MF4 RNU6-3P-201ENST00000384314 107 ntBASIC4.24□□□□□ -1.73
CCDC140Q96MF4 RNU6-16P-201ENST00000384385 107 ntBASIC4.24□□□□□ -1.73
CCDC140Q96MF4 RNU6-15P-201ENST00000384534 107 ntBASIC4.24□□□□□ -1.73
CCDC140Q96MF4 RNU6-2-201ENST00000384627 107 ntBASIC4.24□□□□□ -1.73
CCDC140Q96MF4 RNU6-29P-201ENST00000384637 107 ntBASIC4.24□□□□□ -1.73
CCDC140Q96MF4 RNU6-9-201ENST00000384776 107 ntBASIC4.24□□□□□ -1.73
CCDC140Q96MF4 RNU6-33P-201ENST00000384793 107 ntBASIC4.24□□□□□ -1.73
CCDC140Q96MF4 TRAV23DV6-201ENST00000390451 409 ntAPPRIS P1 BASIC4.24□□□□□ -1.73
CCDC140Q96MF4 SNORA17A-201ENST00000391185 133 ntBASIC4.24□□□□□ -1.73
CCDC140Q96MF4 MRPL42P3-201ENST00000401492 326 ntBASIC4.24□□□□□ -1.73
CCDC140Q96MF4 Y_RNA.605-201ENST00000410577 105 ntBASIC4.24□□□□□ -1.73
CCDC140Q96MF4 AC083867.1-201ENST00000413567 457 ntTSL 3 BASIC4.24□□□□□ -1.73
CCDC140Q96MF4 LINC01690-201ENST00000424837 576 ntTSL 2 BASIC4.24□□□□□ -1.73
CCDC140Q96MF4 RPL21P23-201ENST00000446654 460 ntBASIC4.24□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 98.9 ms