Protein–RNA interactions for Protein: Q96EP1

CHFR, E3 ubiquitin-protein ligase CHFR, humanhuman

Predictions only

Length 664 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHFRQ96EP1 MECOM-217ENST00000494292 3939 ntAPPRIS ALT2 TSL 5 BASIC4.45□□□□□ -1.7
CHFRQ96EP1 TMEM251-201ENST00000283534 909 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
CHFRQ96EP1 CUBN-201ENST00000377823 705 ntTSL 3 BASIC4.45□□□□□ -1.7
CHFRQ96EP1 OR1A2-201ENST00000381951 930 ntAPPRIS P1 BASIC4.45□□□□□ -1.7
CHFRQ96EP1 MIR3074-201ENST00000384885 81 ntBASIC4.45□□□□□ -1.7
CHFRQ96EP1 RNA5SP36-201ENST00000410197 133 ntBASIC4.45□□□□□ -1.7
CHFRQ96EP1 RNU6-373P-201ENST00000411247 98 ntBASIC4.45□□□□□ -1.7
CHFRQ96EP1 AL590705.3-201ENST00000416066 474 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
CHFRQ96EP1 AC010163.2-201ENST00000416341 381 ntTSL 2 BASIC4.45□□□□□ -1.7
CHFRQ96EP1 SPA17P1-201ENST00000416656 452 ntBASIC4.45□□□□□ -1.7
CHFRQ96EP1 RPL31P45-201ENST00000419532 356 ntBASIC4.45□□□□□ -1.7
CHFRQ96EP1 AC003084.1-201ENST00000427030 435 ntTSL 5 BASIC4.45□□□□□ -1.7
CHFRQ96EP1 UTS2B-203ENST00000427544 676 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
CHFRQ96EP1 AL117339.2-201ENST00000430475 180 ntBASIC4.45□□□□□ -1.7
CHFRQ96EP1 RPEP2-201ENST00000432149 701 ntBASIC4.45□□□□□ -1.7
CHFRQ96EP1 AL023693.1-201ENST00000434255 216 ntTSL 5 BASIC4.45□□□□□ -1.7
CHFRQ96EP1 AL356276.2-201ENST00000435919 558 ntBASIC4.45□□□□□ -1.7
CHFRQ96EP1 MTND2P29-201ENST00000438595 412 ntBASIC4.45□□□□□ -1.7
CHFRQ96EP1 HMGB1P18-201ENST00000438801 619 ntBASIC4.45□□□□□ -1.7
CHFRQ96EP1 AC007099.2-201ENST00000444852 336 ntTSL 5 BASIC4.45□□□□□ -1.7
CHFRQ96EP1 MTND1P9-201ENST00000453775 944 ntBASIC4.45□□□□□ -1.7
CHFRQ96EP1 AC123023.1-201ENST00000455974 555 ntTSL 4 BASIC4.45□□□□□ -1.7
CHFRQ96EP1 FAIM-205ENST00000464668 641 ntAPPRIS P3 TSL 5 BASIC4.45□□□□□ -1.7
CHFRQ96EP1 RPL29-203ENST00000475248 551 ntAPPRIS P1 TSL 3 BASIC4.45□□□□□ -1.7
CHFRQ96EP1 AC083800.1-201ENST00000490594 246 ntAPPRIS P1 TSL 3 BASIC4.45□□□□□ -1.7
CHFRQ96EP1 ATP6V1G1P6-201ENST00000504007 334 ntBASIC4.45□□□□□ -1.7
CHFRQ96EP1 AC093722.1-201ENST00000504882 489 ntTSL 3 BASIC4.45□□□□□ -1.7
CHFRQ96EP1 AC097103.1-201ENST00000512398 273 ntTSL 3 BASIC4.45□□□□□ -1.7
CHFRQ96EP1 AC010255.3-204ENST00000514637 454 ntTSL 2 BASIC4.45□□□□□ -1.7
CHFRQ96EP1 RNA5SP446-201ENST00000515955 82 ntBASIC4.45□□□□□ -1.7
CHFRQ96EP1 RNA5SP519-201ENST00000516480 119 ntBASIC4.45□□□□□ -1.7
CHFRQ96EP1 AC136424.2-201ENST00000522582 563 ntTSL 4 BASIC4.45□□□□□ -1.7
CHFRQ96EP1 SLC2A13P1-201ENST00000531560 322 ntBASIC4.45□□□□□ -1.7
CHFRQ96EP1 AC087241.2-201ENST00000535801 324 ntBASIC4.45□□□□□ -1.7
CHFRQ96EP1 CACNA1C-IT2-201ENST00000541871 589 ntTSL 2 BASIC4.45□□□□□ -1.7
CHFRQ96EP1 LINC02386-201ENST00000551202 509 ntTSL 3 BASIC4.45□□□□□ -1.7
CHFRQ96EP1 AC007495.2-202ENST00000564102 535 ntTSL 4 BASIC4.45□□□□□ -1.7
CHFRQ96EP1 AC006270.2-201ENST00000578523 652 ntBASIC4.45□□□□□ -1.7
CHFRQ96EP1 RPL7P50-201ENST00000600588 727 ntBASIC4.45□□□□□ -1.7
CHFRQ96EP1 XIAPP1-201ENST00000603162 600 ntBASIC4.45□□□□□ -1.7
CHFRQ96EP1 NUTF2P8-201ENST00000604593 363 ntBASIC4.45□□□□□ -1.7
CHFRQ96EP1 AL080274.1-201ENST00000605565 220 ntBASIC4.45□□□□□ -1.7
CHFRQ96EP1 AC097468.3-201ENST00000607956 456 ntBASIC4.45□□□□□ -1.7
CHFRQ96EP1 AC112250.2-201ENST00000609450 491 ntTSL 3 BASIC4.45□□□□□ -1.7
CHFRQ96EP1 AC090617.10-201ENST00000624308 134 ntBASIC4.45□□□□□ -1.7
CHFRQ96EP1 AC008785.1-201ENST00000624475 456 ntBASIC4.45□□□□□ -1.7
CHFRQ96EP1 AL589740.1-204ENST00000634677 630 ntTSL 4 BASIC4.45□□□□□ -1.7
CHFRQ96EP1 CNGA1-209ENST00000544810 2722 ntAPPRIS ALT2 TSL 5 BASIC4.45□□□□□ -1.7
CHFRQ96EP1 SCN3A-209ENST00000639244 8854 ntTSL 5 BASIC4.45□□□□□ -1.7
CHFRQ96EP1 CDH9-201ENST00000231021 3079 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
CHFRQ96EP1 TMEM71-210ENST00000523829 1974 ntAPPRIS ALT2 TSL 5 BASIC4.45□□□□□ -1.7
CHFRQ96EP1 PATJ-202ENST00000316485 3657 ntTSL 5 BASIC4.45□□□□□ -1.7
CHFRQ96EP1 PMCHL1-201ENST00000418902 1917 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
CHFRQ96EP1 POU2F1-206ENST00000429375 13651 ntAPPRIS ALT2 TSL 2 BASIC4.44□□□□□ -1.7
CHFRQ96EP1 AKAP11-201ENST00000025301 9920 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
CHFRQ96EP1 IQCB2P-201ENST00000401788 1633 ntBASIC4.44□□□□□ -1.7
CHFRQ96EP1 AC006378.2-201ENST00000623178 2476 ntBASIC4.44□□□□□ -1.7
CHFRQ96EP1 SLC30A6-205ENST00000435660 4776 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
CHFRQ96EP1 Y_RNA.31-201ENST00000362574 102 ntBASIC4.44□□□□□ -1.7
CHFRQ96EP1 Y_RNA.231-201ENST00000364358 102 ntBASIC4.44□□□□□ -1.7
CHFRQ96EP1 AIF1-202ENST00000376049 524 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
CHFRQ96EP1 AL359837.1-201ENST00000381357 287 ntBASIC4.44□□□□□ -1.7
CHFRQ96EP1 MT-TG-201ENST00000387429 68 ntBASIC4.44□□□□□ -1.7
CHFRQ96EP1 AL445189.1-201ENST00000405722 338 ntBASIC4.44□□□□□ -1.7
CHFRQ96EP1 SNORA11C-201ENST00000408532 129 ntBASIC4.44□□□□□ -1.7
CHFRQ96EP1 RN7SKP235-201ENST00000410662 305 ntBASIC4.44□□□□□ -1.7
CHFRQ96EP1 AC009237.10-201ENST00000414112 510 ntBASIC4.44□□□□□ -1.7
CHFRQ96EP1 AC093865.1-201ENST00000415387 433 ntTSL 3 BASIC4.44□□□□□ -1.7
CHFRQ96EP1 CBLL1-202ENST00000415884 804 ntTSL 5 BASIC4.44□□□□□ -1.7
CHFRQ96EP1 LINC01492-202ENST00000425157 659 ntTSL 5 BASIC4.44□□□□□ -1.7
CHFRQ96EP1 AC073335.1-201ENST00000427776 363 ntBASIC4.44□□□□□ -1.7
CHFRQ96EP1 RPL21P91-201ENST00000429231 479 ntBASIC4.44□□□□□ -1.7
CHFRQ96EP1 AC023590.1-205ENST00000430457 676 ntTSL 3 BASIC4.44□□□□□ -1.7
CHFRQ96EP1 LINC00844-201ENST00000432535 477 ntTSL 2 BASIC4.44□□□□□ -1.7
CHFRQ96EP1 SNRPEP4-201ENST00000435815 279 ntBASIC4.44□□□□□ -1.7
CHFRQ96EP1 RPL7P29-201ENST00000437151 728 ntBASIC4.44□□□□□ -1.7
CHFRQ96EP1 AF274573.2-201ENST00000437772 520 ntTSL 5 BASIC4.44□□□□□ -1.7
CHFRQ96EP1 AL731563.1-201ENST00000442202 214 ntBASIC4.44□□□□□ -1.7
CHFRQ96EP1 AC009950.1-206ENST00000445199 517 ntTSL 3 BASIC4.44□□□□□ -1.7
CHFRQ96EP1 AC073587.1-201ENST00000447093 876 ntBASIC4.44□□□□□ -1.7
CHFRQ96EP1 AC114485.1-201ENST00000447916 657 ntTSL 3 BASIC4.44□□□□□ -1.7
CHFRQ96EP1 TTTY23B-202ENST00000451467 512 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
CHFRQ96EP1 TTTY23-201ENST00000452889 512 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
CHFRQ96EP1 AC092620.2-201ENST00000458007 744 ntTSL 2 BASIC4.44□□□□□ -1.7
CHFRQ96EP1 RPL35AP15-201ENST00000468042 339 ntBASIC4.44□□□□□ -1.7
CHFRQ96EP1 AL132838.2-201ENST00000492041 314 ntBASIC4.44□□□□□ -1.7
CHFRQ96EP1 PAIP2-205ENST00000510080 858 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
CHFRQ96EP1 AC048346.1-201ENST00000510247 144 ntBASIC4.44□□□□□ -1.7
CHFRQ96EP1 AC108866.1-202ENST00000511064 573 ntTSL 4 BASIC4.44□□□□□ -1.7
CHFRQ96EP1 LINC02103-201ENST00000512849 523 ntTSL 5 BASIC4.44□□□□□ -1.7
CHFRQ96EP1 MTND5P4-201ENST00000514978 288 ntBASIC4.44□□□□□ -1.7
CHFRQ96EP1 RNU6-1137P-201ENST00000517073 99 ntBASIC4.44□□□□□ -1.7
CHFRQ96EP1 SPINK7-205ENST00000523535 299 ntTSL 2 BASIC4.44□□□□□ -1.7
CHFRQ96EP1 AP001189.2-201ENST00000527320 189 ntBASIC4.44□□□□□ -1.7
CHFRQ96EP1 RPL21P7-201ENST00000557463 483 ntBASIC4.44□□□□□ -1.7
CHFRQ96EP1 MIR4429-201ENST00000580105 73 ntBASIC4.44□□□□□ -1.7
CHFRQ96EP1 MIR4742-201ENST00000581069 85 ntBASIC4.44□□□□□ -1.7
CHFRQ96EP1 AC091178.1-203ENST00000584586 279 ntBASIC4.44□□□□□ -1.7
CHFRQ96EP1 LINC01905-202ENST00000588139 459 ntTSL 3 BASIC4.44□□□□□ -1.7
CHFRQ96EP1 AC005255.1-201ENST00000593748 216 ntBASIC4.44□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 194.4 ms