Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 RNU6-921P-201ENST00000384361 107 ntBASIC5.35□□□□□ -1.55
USHBP1Q8N6Y0 MIR649-201ENST00000384843 97 ntBASIC5.35□□□□□ -1.55
USHBP1Q8N6Y0 MIR195-201ENST00000385194 87 ntBASIC5.35□□□□□ -1.55
USHBP1Q8N6Y0 AL354719.1-201ENST00000406535 843 ntBASIC5.35□□□□□ -1.55
USHBP1Q8N6Y0 RPL39L-202ENST00000433055 749 ntAPPRIS P1 TSL 2 BASIC5.35□□□□□ -1.55
USHBP1Q8N6Y0 AL080313.1-201ENST00000434947 405 ntTSL 2 BASIC5.35□□□□□ -1.55
USHBP1Q8N6Y0 ZNF385D-AS2-201ENST00000436306 424 ntTSL 5 BASIC5.35□□□□□ -1.55
USHBP1Q8N6Y0 AC079354.3-201ENST00000447111 311 ntTSL 2 BASIC5.35□□□□□ -1.55
USHBP1Q8N6Y0 LINC01564-201ENST00000448327 566 ntTSL 3 BASIC5.35□□□□□ -1.55
USHBP1Q8N6Y0 PLCB1-IT1-202ENST00000451443 251 ntTSL 3 BASIC5.35□□□□□ -1.55
USHBP1Q8N6Y0 APOOP2-201ENST00000461561 539 ntBASIC5.35□□□□□ -1.55
USHBP1Q8N6Y0 AL591473.1-201ENST00000464297 313 ntBASIC5.35□□□□□ -1.55
USHBP1Q8N6Y0 RAD51AP1P1-201ENST00000484195 1001 ntBASIC5.35□□□□□ -1.55
USHBP1Q8N6Y0 ATP6V1G3-204ENST00000489986 449 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
USHBP1Q8N6Y0 AL139099.1-201ENST00000497398 403 ntBASIC5.35□□□□□ -1.55
USHBP1Q8N6Y0 PCBP2P3-201ENST00000509726 843 ntBASIC5.35□□□□□ -1.55
USHBP1Q8N6Y0 LINC01969-201ENST00000514468 455 ntTSL 3 BASIC5.35□□□□□ -1.55
USHBP1Q8N6Y0 RNU6-277P-201ENST00000516272 106 ntBASIC5.35□□□□□ -1.55
USHBP1Q8N6Y0 RNU6-347P-201ENST00000516658 105 ntBASIC5.35□□□□□ -1.55
USHBP1Q8N6Y0 AC005740.3-201ENST00000520882 344 ntTSL 2 BASIC5.35□□□□□ -1.55
USHBP1Q8N6Y0 AC009563.1-202ENST00000523365 643 ntTSL 3 BASIC5.35□□□□□ -1.55
USHBP1Q8N6Y0 AC100768.1-201ENST00000525512 506 ntTSL 3 BASIC5.35□□□□□ -1.55
USHBP1Q8N6Y0 AP003072.2-201ENST00000527756 676 ntBASIC5.35□□□□□ -1.55
USHBP1Q8N6Y0 ZNF705CP-201ENST00000530515 889 ntBASIC5.35□□□□□ -1.55
USHBP1Q8N6Y0 OR5B19P-201ENST00000531766 928 ntBASIC5.35□□□□□ -1.55
USHBP1Q8N6Y0 AC092138.1-201ENST00000568659 472 ntTSL 2 BASIC5.35□□□□□ -1.55
USHBP1Q8N6Y0 AC129510.2-201ENST00000582774 345 ntTSL 5 BASIC5.35□□□□□ -1.55
USHBP1Q8N6Y0 LINC01909-202ENST00000584919 815 ntTSL 3 BASIC5.35□□□□□ -1.55
USHBP1Q8N6Y0 AC113139.1-201ENST00000605049 239 ntBASIC5.35□□□□□ -1.55
USHBP1Q8N6Y0 AC091167.4-201ENST00000605079 184 ntBASIC5.35□□□□□ -1.55
USHBP1Q8N6Y0 Z84480.1-201ENST00000605131 311 ntBASIC5.35□□□□□ -1.55
USHBP1Q8N6Y0 AC064801.1-201ENST00000612025 407 ntBASIC5.35□□□□□ -1.55
USHBP1Q8N6Y0 CT45A6-201ENST00000612878 770 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
USHBP1Q8N6Y0 AC244093.3-201ENST00000615419 411 ntTSL 3 BASIC5.35□□□□□ -1.55
USHBP1Q8N6Y0 AC233309.1-201ENST00000619522 751 ntBASIC5.35□□□□□ -1.55
USHBP1Q8N6Y0 CT45A7-202ENST00000620885 578 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
USHBP1Q8N6Y0 CR392039.4-201ENST00000624968 501 ntBASIC5.35□□□□□ -1.55
USHBP1Q8N6Y0 ESRRG-202ENST00000360012 5431 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
USHBP1Q8N6Y0 ACSM3-201ENST00000289416 2845 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
USHBP1Q8N6Y0 AL353784.1-201ENST00000422842 2300 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
USHBP1Q8N6Y0 STEAP2-203ENST00000394622 6612 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
USHBP1Q8N6Y0 CROT-204ENST00000442291 1993 ntTSL 5 BASIC5.35□□□□□ -1.55
USHBP1Q8N6Y0 AC092125.1-201ENST00000562568 1995 ntBASIC5.35□□□□□ -1.55
USHBP1Q8N6Y0 SPAG17-201ENST00000336338 6924 ntAPPRIS P2 TSL 1 (best) BASIC5.34□□□□□ -1.55
USHBP1Q8N6Y0 RWDD2B-207ENST00000493196 3094 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
USHBP1Q8N6Y0 ALS2CR12-201ENST00000286190 1769 ntAPPRIS P3 TSL 1 (best) BASIC5.34□□□□□ -1.55
USHBP1Q8N6Y0 CFAP70-201ENST00000310715 3703 ntAPPRIS P1 TSL 5 BASIC5.34□□□□□ -1.55
USHBP1Q8N6Y0 CNOT4-202ENST00000356162 2594 ntTSL 5 BASIC5.34□□□□□ -1.55
USHBP1Q8N6Y0 ACADM-203ENST00000420607 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC5.34□□□□□ -1.55
USHBP1Q8N6Y0 MED12L-201ENST00000273432 6401 ntTSL 2 BASIC5.34□□□□□ -1.55
USHBP1Q8N6Y0 GAPT-201ENST00000318469 2119 ntAPPRIS P1 BASIC5.34□□□□□ -1.55
USHBP1Q8N6Y0 DEFB108B-201ENST00000328698 222 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
USHBP1Q8N6Y0 RNU6-853P-201ENST00000364306 107 ntBASIC5.34□□□□□ -1.55
USHBP1Q8N6Y0 RNU6-169P-201ENST00000365336 107 ntBASIC5.34□□□□□ -1.55
USHBP1Q8N6Y0 SNORA51.6-201ENST00000384151 125 ntBASIC5.34□□□□□ -1.55
USHBP1Q8N6Y0 RNU6-441P-201ENST00000384545 106 ntBASIC5.34□□□□□ -1.55
USHBP1Q8N6Y0 RN7SKP156-201ENST00000410308 342 ntBASIC5.34□□□□□ -1.55
USHBP1Q8N6Y0 RN7SKP140-201ENST00000411196 284 ntBASIC5.34□□□□□ -1.55
USHBP1Q8N6Y0 NCOR1P3-201ENST00000420479 303 ntBASIC5.34□□□□□ -1.55
USHBP1Q8N6Y0 ATP5JP1-201ENST00000431631 322 ntBASIC5.34□□□□□ -1.55
USHBP1Q8N6Y0 AC119618.1-201ENST00000434191 222 ntBASIC5.34□□□□□ -1.55
USHBP1Q8N6Y0 MTND6P18-201ENST00000439477 513 ntBASIC5.34□□□□□ -1.55
USHBP1Q8N6Y0 HSPE1P28-201ENST00000443139 211 ntBASIC5.34□□□□□ -1.55
USHBP1Q8N6Y0 AC013460.1-205ENST00000450695 518 ntTSL 4 BASIC5.34□□□□□ -1.55
USHBP1Q8N6Y0 AC243772.1-201ENST00000451620 410 ntBASIC5.34□□□□□ -1.55
USHBP1Q8N6Y0 RPL7L1P8-201ENST00000469911 741 ntBASIC5.34□□□□□ -1.55
USHBP1Q8N6Y0 RPS3AP50-201ENST00000487064 803 ntBASIC5.34□□□□□ -1.55
USHBP1Q8N6Y0 RPL29P14-201ENST00000495837 428 ntBASIC5.34□□□□□ -1.55
USHBP1Q8N6Y0 AC103851.1-201ENST00000506833 274 ntBASIC5.34□□□□□ -1.55
USHBP1Q8N6Y0 AC093297.2-204ENST00000508945 295 ntTSL 3 BASIC5.34□□□□□ -1.55
USHBP1Q8N6Y0 RNU7-143P-201ENST00000516781 65 ntBASIC5.34□□□□□ -1.55
USHBP1Q8N6Y0 RNA5SP179-201ENST00000517284 121 ntBASIC5.34□□□□□ -1.55
USHBP1Q8N6Y0 KLRF1-203ENST00000537723 598 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
USHBP1Q8N6Y0 AC023050.3-201ENST00000541142 333 ntBASIC5.34□□□□□ -1.55
USHBP1Q8N6Y0 AC084291.1-201ENST00000544667 548 ntTSL 2 BASIC5.34□□□□□ -1.55
USHBP1Q8N6Y0 MIR3671-201ENST00000580455 88 ntBASIC5.34□□□□□ -1.55
USHBP1Q8N6Y0 LINC02079-201ENST00000582518 294 ntTSL 2 BASIC5.34□□□□□ -1.55
USHBP1Q8N6Y0 AC064805.2-201ENST00000582959 523 ntTSL 4 BASIC5.34□□□□□ -1.55
USHBP1Q8N6Y0 AL451044.1-201ENST00000604867 238 ntBASIC5.34□□□□□ -1.55
USHBP1Q8N6Y0 AC008035.1-201ENST00000607353 448 ntTSL 3 BASIC5.34□□□□□ -1.55
USHBP1Q8N6Y0 AC009248.2-201ENST00000619826 254 ntBASIC5.34□□□□□ -1.55
USHBP1Q8N6Y0 AC091953.2-201ENST00000623979 160 ntBASIC5.34□□□□□ -1.55
USHBP1Q8N6Y0 AC008703.1-201ENST00000637629 1174 ntTSL 5 BASIC5.34□□□□□ -1.55
USHBP1Q8N6Y0 AC092079.1-201ENST00000558620 1985 ntBASIC5.34□□□□□ -1.55
USHBP1Q8N6Y0 RABGAP1L-202ENST00000325589 1880 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
USHBP1Q8N6Y0 SCN1A-201ENST00000303395 8533 ntAPPRIS ALT1 TSL 5 BASIC5.34□□□□□ -1.55
USHBP1Q8N6Y0 C21orf91-201ENST00000284881 5433 ntAPPRIS P4 TSL 2 BASIC5.34□□□□□ -1.56
USHBP1Q8N6Y0 ZNF285B-201ENST00000561698 1767 ntBASIC5.34□□□□□ -1.56
USHBP1Q8N6Y0 HMGB1-204ENST00000399489 1727 ntTSL 1 (best) BASIC5.34□□□□□ -1.56
USHBP1Q8N6Y0 ZNF445-201ENST00000396077 18299 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.56
USHBP1Q8N6Y0 ZMYM6-201ENST00000317538 2702 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
USHBP1Q8N6Y0 CASP1-210ENST00000528974 1402 ntTSL 2 BASIC5.33□□□□□ -1.56
USHBP1Q8N6Y0 NACAP2-201ENST00000318548 624 ntBASIC5.33□□□□□ -1.56
USHBP1Q8N6Y0 RPL7P26-201ENST00000333817 754 ntBASIC5.33□□□□□ -1.56
USHBP1Q8N6Y0 AC067945.1-201ENST00000342609 618 ntBASIC5.33□□□□□ -1.56
USHBP1Q8N6Y0 RNU4-1-201ENST00000363925 141 ntBASIC5.33□□□□□ -1.56
USHBP1Q8N6Y0 SNORD46.1-201ENST00000364139 104 ntBASIC5.33□□□□□ -1.56
USHBP1Q8N6Y0 AC068533.1-201ENST00000418542 415 ntBASIC5.33□□□□□ -1.56
USHBP1Q8N6Y0 CYP4F29P-201ENST00000420685 446 ntBASIC5.33□□□□□ -1.56
USHBP1Q8N6Y0 LINC01204-201ENST00000422047 639 ntTSL 3 BASIC5.33□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 80.2 ms