Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 HSPE1P7-201ENST00000604681 321 ntBASIC3.26□□□□□ -1.89
HDDC3Q8N4P3 AL390208.1-201ENST00000605885 644 ntBASIC3.26□□□□□ -1.89
HDDC3Q8N4P3 AC110609.1-201ENST00000608228 303 ntTSL 3 BASIC3.26□□□□□ -1.89
HDDC3Q8N4P3 AC097717.1-250ENST00000608498 273 ntTSL 5 BASIC3.26□□□□□ -1.89
HDDC3Q8N4P3 AL590099.1-201ENST00000615276 138 ntBASIC3.26□□□□□ -1.89
HDDC3Q8N4P3 WFDC11-203ENST00000618797 561 ntAPPRIS P1 TSL 5 BASIC3.26□□□□□ -1.89
HDDC3Q8N4P3 MIR7153-201ENST00000637758 57 ntBASIC3.26□□□□□ -1.89
HDDC3Q8N4P3 PRKG2-206ENST00000545647 3852 ntTSL 5 BASIC3.25□□□□□ -1.89
HDDC3Q8N4P3 NBPF20-201ENST00000369373 18760 ntAPPRIS ALT2 TSL 5 BASIC3.25□□□□□ -1.89
HDDC3Q8N4P3 CLOCK-201ENST00000309964 10304 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
HDDC3Q8N4P3 RNU6-799P-201ENST00000363567 107 ntBASIC3.25□□□□□ -1.89
HDDC3Q8N4P3 TRAJ59-201ENST00000390480 54 ntAPPRIS P1 BASIC3.25□□□□□ -1.89
HDDC3Q8N4P3 AC068533.2-201ENST00000411872 306 ntBASIC3.25□□□□□ -1.89
HDDC3Q8N4P3 RPS15AP6-201ENST00000420703 385 ntBASIC3.25□□□□□ -1.89
HDDC3Q8N4P3 AL139421.1-201ENST00000423010 169 ntBASIC3.25□□□□□ -1.89
HDDC3Q8N4P3 NBDY-202ENST00000423617 543 ntAPPRIS P1 TSL 2 BASIC3.25□□□□□ -1.89
HDDC3Q8N4P3 AL033504.1-201ENST00000427015 773 ntTSL 2 BASIC3.25□□□□□ -1.89
HDDC3Q8N4P3 RPL23AP82-202ENST00000427528 469 ntBASIC3.25□□□□□ -1.89
HDDC3Q8N4P3 AC007179.2-207ENST00000435557 556 ntTSL 4 BASIC3.25□□□□□ -1.89
HDDC3Q8N4P3 RPS4XP2-201ENST00000458402 793 ntBASIC3.25□□□□□ -1.89
HDDC3Q8N4P3 snoU13.8-201ENST00000458890 104 ntBASIC3.25□□□□□ -1.89
HDDC3Q8N4P3 CENPBD1P1-201ENST00000464061 469 ntBASIC3.25□□□□□ -1.89
HDDC3Q8N4P3 NCOR1P1-201ENST00000478176 406 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
HDDC3Q8N4P3 AC104982.1-201ENST00000478775 574 ntBASIC3.25□□□□□ -1.89
HDDC3Q8N4P3 AC024132.3-201ENST00000513616 649 ntTSL 5 BASIC3.25□□□□□ -1.89
HDDC3Q8N4P3 AC017037.2-201ENST00000513850 890 ntBASIC3.25□□□□□ -1.89
HDDC3Q8N4P3 AC026801.2-201ENST00000515352 425 ntBASIC3.25□□□□□ -1.89
HDDC3Q8N4P3 AC104233.2-201ENST00000518922 414 ntTSL 3 BASIC3.25□□□□□ -1.89
HDDC3Q8N4P3 YWHAZP1-201ENST00000556286 722 ntBASIC3.25□□□□□ -1.89
HDDC3Q8N4P3 AC009117.2-201ENST00000565374 504 ntTSL 3 BASIC3.25□□□□□ -1.89
HDDC3Q8N4P3 AC217774.1-201ENST00000578936 517 ntTSL 4 BASIC3.25□□□□□ -1.89
HDDC3Q8N4P3 MIR3609-201ENST00000582661 80 ntBASIC3.25□□□□□ -1.89
HDDC3Q8N4P3 SATB1-AS1-207ENST00000593741 955 ntTSL 5 BASIC3.25□□□□□ -1.89
HDDC3Q8N4P3 VN1R78P-201ENST00000597393 564 ntBASIC3.25□□□□□ -1.89
HDDC3Q8N4P3 AC079089.3-201ENST00000603094 673 ntBASIC3.25□□□□□ -1.89
HDDC3Q8N4P3 AC004987.4-201ENST00000603383 338 ntBASIC3.25□□□□□ -1.89
HDDC3Q8N4P3 AC027309.3-201ENST00000623419 351 ntBASIC3.25□□□□□ -1.89
HDDC3Q8N4P3 AC011139.1-202ENST00000637744 563 ntTSL 5 BASIC3.25□□□□□ -1.89
HDDC3Q8N4P3 DLD-214ENST00000639772 421 ntTSL 5 BASIC3.25□□□□□ -1.89
HDDC3Q8N4P3 AC005832.2-201ENST00000538921 1430 ntBASIC3.25□□□□□ -1.89
HDDC3Q8N4P3 TRIQK-201ENST00000378861 1596 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
HDDC3Q8N4P3 AC012321.1-201ENST00000561622 1588 ntBASIC3.25□□□□□ -1.89
HDDC3Q8N4P3 CYYR1-AS1-201ENST00000357401 3412 ntTSL 2 BASIC3.25□□□□□ -1.89
HDDC3Q8N4P3 SCFD1-207ENST00000544052 2058 ntTSL 2 BASIC3.24□□□□□ -1.89
HDDC3Q8N4P3 ELAVL2-204ENST00000397312 3805 ntAPPRIS P3 TSL 1 (best) BASIC3.24□□□□□ -1.89
HDDC3Q8N4P3 AL365440.2-201ENST00000419738 2597 ntTSL 2 BASIC3.24□□□□□ -1.89
HDDC3Q8N4P3 AC008505.1-204ENST00000637363 2714 ntTSL 5 BASIC3.24□□□□□ -1.89
HDDC3Q8N4P3 AL035425.3-201ENST00000564206 4996 ntBASIC3.24□□□□□ -1.89
HDDC3Q8N4P3 TPTE2P4-201ENST00000258589 1605 ntBASIC3.24□□□□□ -1.89
HDDC3Q8N4P3 LGI1-201ENST00000371413 1247 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
HDDC3Q8N4P3 SNORD116-12-201ENST00000384468 92 ntBASIC3.24□□□□□ -1.89
HDDC3Q8N4P3 SNORA44-201ENST00000384584 132 ntBASIC3.24□□□□□ -1.89
HDDC3Q8N4P3 RNU6-55P-201ENST00000411092 107 ntBASIC3.24□□□□□ -1.89
HDDC3Q8N4P3 RNU6-954P-201ENST00000411355 107 ntBASIC3.24□□□□□ -1.89
HDDC3Q8N4P3 RPL31P12-201ENST00000422587 358 ntBASIC3.24□□□□□ -1.89
HDDC3Q8N4P3 AL590783.1-201ENST00000424138 456 ntTSL 2 BASIC3.24□□□□□ -1.89
HDDC3Q8N4P3 AC107083.1-201ENST00000439643 279 ntBASIC3.24□□□□□ -1.89
HDDC3Q8N4P3 RPL26P6-201ENST00000440913 438 ntBASIC3.24□□□□□ -1.89
HDDC3Q8N4P3 RNF2P1-201ENST00000442955 1010 ntBASIC3.24□□□□□ -1.89
HDDC3Q8N4P3 AL163192.1-201ENST00000448858 708 ntTSL 5 BASIC3.24□□□□□ -1.89
HDDC3Q8N4P3 SNRPGP6-201ENST00000451124 220 ntBASIC3.24□□□□□ -1.89
HDDC3Q8N4P3 MRPS31P2-201ENST00000451581 518 ntBASIC3.24□□□□□ -1.89
HDDC3Q8N4P3 RPL18AP17-201ENST00000455326 198 ntBASIC3.24□□□□□ -1.89
HDDC3Q8N4P3 Z84488.1-201ENST00000476099 530 ntTSL 2 BASIC3.24□□□□□ -1.89
HDDC3Q8N4P3 CTD-2350J17.1-201ENST00000509228 362 ntTSL 2 BASIC3.24□□□□□ -1.89
HDDC3Q8N4P3 AC091163.3-201ENST00000518269 1144 ntBASIC3.24□□□□□ -1.89
HDDC3Q8N4P3 NDUFB9P3-201ENST00000521269 501 ntBASIC3.24□□□□□ -1.89
HDDC3Q8N4P3 CA1-215ENST00000522389 551 ntTSL 3 BASIC3.24□□□□□ -1.89
HDDC3Q8N4P3 AC092745.2-201ENST00000537764 620 ntTSL 3 BASIC3.24□□□□□ -1.89
HDDC3Q8N4P3 AC006518.1-201ENST00000541449 943 ntBASIC3.24□□□□□ -1.89
HDDC3Q8N4P3 H3F3AP1-201ENST00000559984 334 ntBASIC3.24□□□□□ -1.89
HDDC3Q8N4P3 IGKV1OR2-6-201ENST00000603485 277 ntBASIC3.24□□□□□ -1.89
HDDC3Q8N4P3 AC011451.2-201ENST00000604303 598 ntBASIC3.24□□□□□ -1.89
HDDC3Q8N4P3 AC138932.5-201ENST00000617759 563 ntBASIC3.24□□□□□ -1.89
HDDC3Q8N4P3 AC018692.3-201ENST00000623929 123 ntBASIC3.24□□□□□ -1.89
HDDC3Q8N4P3 AC231657.1-201ENST00000624313 397 ntBASIC3.24□□□□□ -1.89
HDDC3Q8N4P3 PROX1-AS1-244ENST00000630355 599 ntTSL 5 BASIC3.24□□□□□ -1.89
HDDC3Q8N4P3 SRP72P2-201ENST00000344851 1979 ntBASIC3.23□□□□□ -1.89
HDDC3Q8N4P3 SLC10A5P1-201ENST00000379063 1306 ntBASIC3.23□□□□□ -1.89
HDDC3Q8N4P3 TOPORSLP1-203ENST00000493279 2871 ntTSL 4 BASIC3.23□□□□□ -1.89
HDDC3Q8N4P3 LUZP2-208ENST00000620308 4981 ntTSL 5 BASIC3.23□□□□□ -1.89
HDDC3Q8N4P3 SLC39A10-201ENST00000359634 5322 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
HDDC3Q8N4P3 CUBN-201ENST00000377823 705 ntTSL 3 BASIC3.23□□□□□ -1.89
HDDC3Q8N4P3 Y_RNA.408-201ENST00000383987 102 ntBASIC3.23□□□□□ -1.89
HDDC3Q8N4P3 RPA3-203ENST00000401447 414 ntTSL 3 BASIC3.23□□□□□ -1.89
HDDC3Q8N4P3 AL592310.1-201ENST00000414330 671 ntBASIC3.23□□□□□ -1.89
HDDC3Q8N4P3 AC093157.1-203ENST00000416329 713 ntTSL 5 BASIC3.23□□□□□ -1.89
HDDC3Q8N4P3 BX890604.2-201ENST00000427883 474 ntBASIC3.23□□□□□ -1.89
HDDC3Q8N4P3 AL590383.1-201ENST00000428602 75 ntBASIC3.23□□□□□ -1.89
HDDC3Q8N4P3 AL136234.1-201ENST00000437080 349 ntTSL 2 BASIC3.23□□□□□ -1.89
HDDC3Q8N4P3 RPL23AP76-201ENST00000441860 458 ntBASIC3.23□□□□□ -1.89
HDDC3Q8N4P3 ARPC3P5-201ENST00000448802 534 ntBASIC3.23□□□□□ -1.89
HDDC3Q8N4P3 AL020994.3-201ENST00000449126 274 ntTSL 3 BASIC3.23□□□□□ -1.89
HDDC3Q8N4P3 MUC7-203ENST00000456088 2479 ntAPPRIS P2 TSL 4 BASIC3.23□□□□□ -1.89
HDDC3Q8N4P3 AC117465.1-201ENST00000457125 522 ntTSL 3 BASIC3.23□□□□□ -1.89
HDDC3Q8N4P3 AC078883.3-201ENST00000458314 512 ntTSL 2 BASIC3.23□□□□□ -1.89
HDDC3Q8N4P3 AC147055.4-201ENST00000504399 745 ntBASIC3.23□□□□□ -1.89
HDDC3Q8N4P3 AC096571.1-202ENST00000506634 735 ntBASIC3.23□□□□□ -1.89
HDDC3Q8N4P3 AC093677.1-201ENST00000514414 678 ntBASIC3.23□□□□□ -1.89
HDDC3Q8N4P3 AC022360.2-202ENST00000517308 407 ntTSL 3 BASIC3.23□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 85.6 ms