Protein–RNA interactions for Protein: Q8N3C7

CLIP4, CAP-Gly domain-containing linker protein 4, humanhuman

Predictions only

Length 705 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP4Q8N3C7 AL500522.2-201ENST00000448562 343 ntBASIC3.62□□□□□ -1.83
CLIP4Q8N3C7 RPS17P13-201ENST00000448974 407 ntBASIC3.62□□□□□ -1.83
CLIP4Q8N3C7 RPL7P15-201ENST00000461190 712 ntBASIC3.62□□□□□ -1.83
CLIP4Q8N3C7 AP001992.1-205ENST00000462248 379 ntBASIC3.62□□□□□ -1.83
CLIP4Q8N3C7 AC010618.1-201ENST00000469924 477 ntBASIC3.62□□□□□ -1.83
CLIP4Q8N3C7 AC022034.3-201ENST00000471393 478 ntBASIC3.62□□□□□ -1.83
CLIP4Q8N3C7 RBM43P1-201ENST00000476891 1081 ntBASIC3.62□□□□□ -1.83
CLIP4Q8N3C7 AL132838.2-201ENST00000492041 314 ntBASIC3.62□□□□□ -1.83
CLIP4Q8N3C7 AC009646.1-201ENST00000510455 318 ntBASIC3.62□□□□□ -1.83
CLIP4Q8N3C7 TMEM248P1-201ENST00000510579 951 ntBASIC3.62□□□□□ -1.83
CLIP4Q8N3C7 AC016550.2-202ENST00000511940 581 ntTSL 2 BASIC3.62□□□□□ -1.83
CLIP4Q8N3C7 SAP18P1-201ENST00000512058 390 ntBASIC3.62□□□□□ -1.83
CLIP4Q8N3C7 EGFLAM-AS2-201ENST00000512603 466 ntTSL 5 BASIC3.62□□□□□ -1.83
CLIP4Q8N3C7 AC010493.1-201ENST00000513479 292 ntBASIC3.62□□□□□ -1.83
CLIP4Q8N3C7 RNU6-201P-201ENST00000517100 61 ntBASIC3.62□□□□□ -1.83
CLIP4Q8N3C7 RNA5SP179-201ENST00000517284 121 ntBASIC3.62□□□□□ -1.83
CLIP4Q8N3C7 MRPL49P2-201ENST00000521066 465 ntBASIC3.62□□□□□ -1.83
CLIP4Q8N3C7 AC100871.2-201ENST00000522005 327 ntTSL 3 BASIC3.62□□□□□ -1.83
CLIP4Q8N3C7 AC090539.1-201ENST00000523907 434 ntTSL 3 BASIC3.62□□□□□ -1.83
CLIP4Q8N3C7 AL354920.1-202ENST00000531661 1017 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
CLIP4Q8N3C7 AL358335.2-201ENST00000555693 487 ntTSL 3 BASIC3.62□□□□□ -1.83
CLIP4Q8N3C7 AC044798.1-201ENST00000565146 418 ntTSL 5 BASIC3.62□□□□□ -1.83
CLIP4Q8N3C7 AC034268.2-201ENST00000571784 482 ntBASIC3.62□□□□□ -1.83
CLIP4Q8N3C7 AC003687.1-201ENST00000578040 427 ntTSL 3 BASIC3.62□□□□□ -1.83
CLIP4Q8N3C7 BNIP3P30-201ENST00000601184 574 ntBASIC3.62□□□□□ -1.83
CLIP4Q8N3C7 AP000907.4-201ENST00000604143 237 ntBASIC3.62□□□□□ -1.83
CLIP4Q8N3C7 AL357078.3-201ENST00000607528 618 ntBASIC3.62□□□□□ -1.83
CLIP4Q8N3C7 AL161734.1-201ENST00000609720 557 ntBASIC3.62□□□□□ -1.83
CLIP4Q8N3C7 AL359880.1-201ENST00000621879 266 ntBASIC3.62□□□□□ -1.83
CLIP4Q8N3C7 AL732618.1-201ENST00000623251 301 ntBASIC3.62□□□□□ -1.83
CLIP4Q8N3C7 GOLT1B-210ENST00000631252 223 ntTSL 3 BASIC3.62□□□□□ -1.83
CLIP4Q8N3C7 MIR3688-2-201ENST00000636963 87 ntBASIC3.62□□□□□ -1.83
CLIP4Q8N3C7 AC010149.2-201ENST00000637608 315 ntBASIC3.62□□□□□ -1.83
CLIP4Q8N3C7 EVI5-208ENST00000540033 7436 ntAPPRIS ALT2 TSL 1 (best) BASIC3.62□□□□□ -1.83
CLIP4Q8N3C7 ZC3H11A-214ENST00000639812 11825 ntAPPRIS P1 TSL 5 BASIC3.62□□□□□ -1.83
CLIP4Q8N3C7 MUC19-205ENST00000454784 24775 ntTSL 5 BASIC3.62□□□□□ -1.83
CLIP4Q8N3C7 ZNF439-201ENST00000304030 2622 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
CLIP4Q8N3C7 AC009951.1-201ENST00000623674 2614 ntBASIC3.62□□□□□ -1.83
CLIP4Q8N3C7 ESCO1-201ENST00000269214 4523 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
CLIP4Q8N3C7 NUP35-201ENST00000295119 1633 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
CLIP4Q8N3C7 ZFAND6-212ENST00000559775 1602 ntAPPRIS P1 TSL 2 BASIC3.62□□□□□ -1.83
CLIP4Q8N3C7 TFEC-201ENST00000265440 6628 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
CLIP4Q8N3C7 C1D-201ENST00000355848 2233 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
CLIP4Q8N3C7 CYP3A7-201ENST00000336374 1971 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
CLIP4Q8N3C7 LGI1-210ENST00000629035 2251 ntTSL 5 BASIC3.61□□□□□ -1.83
CLIP4Q8N3C7 RAD17-202ENST00000305138 3164 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
CLIP4Q8N3C7 ORC3-201ENST00000257789 2501 ntAPPRIS P3 TSL 1 (best) BASIC3.61□□□□□ -1.83
CLIP4Q8N3C7 SPAM1-205ENST00000439500 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC3.61□□□□□ -1.83
CLIP4Q8N3C7 CD84-204ENST00000368048 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC3.61□□□□□ -1.83
CLIP4Q8N3C7 PRIM2-202ENST00000370687 909 ntTSL 3 BASIC3.61□□□□□ -1.83
CLIP4Q8N3C7 Y_RNA.390-201ENST00000383932 102 ntBASIC3.61□□□□□ -1.83
CLIP4Q8N3C7 RNU6-730P-201ENST00000383954 104 ntBASIC3.61□□□□□ -1.83
CLIP4Q8N3C7 Y_RNA.453-201ENST00000384223 109 ntBASIC3.61□□□□□ -1.83
CLIP4Q8N3C7 TRAV40-201ENST00000390467 317 ntAPPRIS P1 BASIC3.61□□□□□ -1.83
CLIP4Q8N3C7 MRPL42P2-201ENST00000403169 426 ntBASIC3.61□□□□□ -1.83
CLIP4Q8N3C7 MIR1277-201ENST00000408536 78 ntBASIC3.61□□□□□ -1.83
CLIP4Q8N3C7 RNU4-6P-201ENST00000410804 122 ntBASIC3.61□□□□□ -1.83
CLIP4Q8N3C7 AC078974.1-201ENST00000411597 223 ntBASIC3.61□□□□□ -1.83
CLIP4Q8N3C7 AL133343.3-201ENST00000413983 469 ntTSL 2 BASIC3.61□□□□□ -1.83
CLIP4Q8N3C7 RPS12P23-201ENST00000419579 400 ntBASIC3.61□□□□□ -1.83
CLIP4Q8N3C7 TIMM9P3-201ENST00000428659 274 ntBASIC3.61□□□□□ -1.83
CLIP4Q8N3C7 CXorf51B-201ENST00000438525 436 ntAPPRIS P1 TSL 2 BASIC3.61□□□□□ -1.83
CLIP4Q8N3C7 AL138799.2-201ENST00000439024 343 ntTSL 2 BASIC3.61□□□□□ -1.83
CLIP4Q8N3C7 LINC00280-201ENST00000439525 448 ntTSL 2 BASIC3.61□□□□□ -1.83
CLIP4Q8N3C7 LINC01317-202ENST00000442026 677 ntTSL 3 BASIC3.61□□□□□ -1.83
CLIP4Q8N3C7 VN1R34P-201ENST00000447387 883 ntBASIC3.61□□□□□ -1.83
CLIP4Q8N3C7 AC079448.1-201ENST00000449377 373 ntBASIC3.61□□□□□ -1.83
CLIP4Q8N3C7 HMGB3P8-201ENST00000449709 577 ntBASIC3.61□□□□□ -1.83
CLIP4Q8N3C7 AC010891.1-201ENST00000449963 448 ntTSL 2 BASIC3.61□□□□□ -1.83
CLIP4Q8N3C7 MCCC1-AS1-201ENST00000471731 765 ntTSL 5 BASIC3.61□□□□□ -1.83
CLIP4Q8N3C7 FCF1P3-201ENST00000496394 590 ntBASIC3.61□□□□□ -1.83
CLIP4Q8N3C7 AC010255.1-201ENST00000504829 731 ntTSL 5 BASIC3.61□□□□□ -1.83
CLIP4Q8N3C7 HMGB1P29-201ENST00000505659 499 ntBASIC3.61□□□□□ -1.83
CLIP4Q8N3C7 TXNP6-201ENST00000510190 310 ntBASIC3.61□□□□□ -1.83
CLIP4Q8N3C7 LINC02283-201ENST00000511634 474 ntTSL 3 BASIC3.61□□□□□ -1.83
CLIP4Q8N3C7 AC092542.1-201ENST00000513155 355 ntTSL 2 BASIC3.61□□□□□ -1.83
CLIP4Q8N3C7 LINC02014-201ENST00000514010 713 ntTSL 3 BASIC3.61□□□□□ -1.83
CLIP4Q8N3C7 AC093677.1-201ENST00000514414 678 ntBASIC3.61□□□□□ -1.83
CLIP4Q8N3C7 LINC02492-204ENST00000515660 584 ntTSL 2 BASIC3.61□□□□□ -1.83
CLIP4Q8N3C7 RNU4ATAC10P-201ENST00000516967 122 ntBASIC3.61□□□□□ -1.83
CLIP4Q8N3C7 AC022616.6-201ENST00000520479 119 ntBASIC3.61□□□□□ -1.83
CLIP4Q8N3C7 HIGD1AP5-201ENST00000529959 259 ntBASIC3.61□□□□□ -1.83
CLIP4Q8N3C7 FAM222A-AS1-202ENST00000541460 751 ntTSL 4 BASIC3.61□□□□□ -1.83
CLIP4Q8N3C7 YPEL5P3-201ENST00000547227 352 ntBASIC3.61□□□□□ -1.83
CLIP4Q8N3C7 AC133480.1-201ENST00000547563 381 ntTSL 3 BASIC3.61□□□□□ -1.83
CLIP4Q8N3C7 AL355097.1-201ENST00000555889 539 ntTSL 4 BASIC3.61□□□□□ -1.83
CLIP4Q8N3C7 AP005205.1-201ENST00000563503 508 ntBASIC3.61□□□□□ -1.83
CLIP4Q8N3C7 AC069061.2-202ENST00000580280 357 ntTSL 3 BASIC3.61□□□□□ -1.83
CLIP4Q8N3C7 LINC01899-201ENST00000580323 312 ntTSL 5 BASIC3.61□□□□□ -1.83
CLIP4Q8N3C7 AC090403.1-205ENST00000580883 516 ntTSL 2 BASIC3.61□□□□□ -1.83
CLIP4Q8N3C7 RPS4XP16-203ENST00000596904 698 ntTSL 5 BASIC3.61□□□□□ -1.83
CLIP4Q8N3C7 AC245014.2-201ENST00000603689 287 ntBASIC3.61□□□□□ -1.83
CLIP4Q8N3C7 AC011468.4-201ENST00000603942 409 ntBASIC3.61□□□□□ -1.83
CLIP4Q8N3C7 AC025588.3-201ENST00000604182 274 ntBASIC3.61□□□□□ -1.83
CLIP4Q8N3C7 AC107031.1-201ENST00000604939 347 ntTSL 2 BASIC3.61□□□□□ -1.83
CLIP4Q8N3C7 AL365503.1-201ENST00000605247 905 ntBASIC3.61□□□□□ -1.83
CLIP4Q8N3C7 AC246785.4-201ENST00000605374 287 ntBASIC3.61□□□□□ -1.83
CLIP4Q8N3C7 AL590282.1-201ENST00000610379 1136 ntBASIC3.61□□□□□ -1.83
CLIP4Q8N3C7 MIR6867-201ENST00000610636 67 ntBASIC3.61□□□□□ -1.83
CLIP4Q8N3C7 MALAT1-206ENST00000612781 234 ntTSL 3 BASIC3.61□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 82.7 ms