Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 MDM2-208ENST00000393410 732 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
CCDC28AQ8IWP9 AC068050.1-201ENST00000394891 380 ntBASIC3.79□□□□□ -1.8
CCDC28AQ8IWP9 MIR1277-201ENST00000408536 78 ntBASIC3.79□□□□□ -1.8
CCDC28AQ8IWP9 RN7SKP140-201ENST00000411196 284 ntBASIC3.79□□□□□ -1.8
CCDC28AQ8IWP9 OR51A5P-201ENST00000415429 942 ntBASIC3.79□□□□□ -1.8
CCDC28AQ8IWP9 ZNF90P2-204ENST00000419323 1075 ntBASIC3.79□□□□□ -1.8
CCDC28AQ8IWP9 LINC00368-201ENST00000422994 650 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
CCDC28AQ8IWP9 AL360081.1-201ENST00000428299 555 ntBASIC3.79□□□□□ -1.8
CCDC28AQ8IWP9 BX323845.1-201ENST00000432417 179 ntBASIC3.79□□□□□ -1.8
CCDC28AQ8IWP9 PTMAP6-201ENST00000439110 327 ntBASIC3.79□□□□□ -1.8
CCDC28AQ8IWP9 ACBD3-AS1-201ENST00000440540 535 ntTSL 5 BASIC3.79□□□□□ -1.8
CCDC28AQ8IWP9 AL157882.1-201ENST00000447148 429 ntTSL 3 BASIC3.79□□□□□ -1.8
CCDC28AQ8IWP9 AC013269.3-201ENST00000450486 444 ntTSL 3 BASIC3.79□□□□□ -1.8
CCDC28AQ8IWP9 FDX1P2-201ENST00000450769 375 ntBASIC3.79□□□□□ -1.8
CCDC28AQ8IWP9 AL445524.1-204ENST00000454631 458 ntTSL 3 BASIC3.79□□□□□ -1.8
CCDC28AQ8IWP9 Z92846.1-201ENST00000456203 268 ntBASIC3.79□□□□□ -1.8
CCDC28AQ8IWP9 AL160162.1-201ENST00000456715 442 ntTSL 3 BASIC3.79□□□□□ -1.8
CCDC28AQ8IWP9 RNU7-63P-201ENST00000459054 62 ntBASIC3.79□□□□□ -1.8
CCDC28AQ8IWP9 MTCO3P38-201ENST00000468910 766 ntBASIC3.79□□□□□ -1.8
CCDC28AQ8IWP9 AC083798.1-201ENST00000472671 131 ntBASIC3.79□□□□□ -1.8
CCDC28AQ8IWP9 C1orf112-206ENST00000472795 925 ntAPPRIS ALT2 TSL 2 BASIC3.79□□□□□ -1.8
CCDC28AQ8IWP9 RN7SL174P-201ENST00000475578 289 ntBASIC3.79□□□□□ -1.8
CCDC28AQ8IWP9 RPL36AP51-201ENST00000487216 318 ntBASIC3.79□□□□□ -1.8
CCDC28AQ8IWP9 RNA5SP309-201ENST00000516670 106 ntBASIC3.79□□□□□ -1.8
CCDC28AQ8IWP9 RNA5SP468-201ENST00000516782 93 ntBASIC3.79□□□□□ -1.8
CCDC28AQ8IWP9 LINC01495-202ENST00000534135 343 ntTSL 2 BASIC3.79□□□□□ -1.8
CCDC28AQ8IWP9 AF099810.1-201ENST00000554219 525 ntTSL 3 BASIC3.79□□□□□ -1.8
CCDC28AQ8IWP9 C16orf97-203ENST00000566314 281 ntTSL 3 BASIC3.79□□□□□ -1.8
CCDC28AQ8IWP9 AC092325.1-201ENST00000566449 554 ntBASIC3.79□□□□□ -1.8
CCDC28AQ8IWP9 AC091178.1-203ENST00000584586 279 ntBASIC3.79□□□□□ -1.8
CCDC28AQ8IWP9 AC011445.2-201ENST00000599274 173 ntBASIC3.79□□□□□ -1.8
CCDC28AQ8IWP9 AC010591.1-201ENST00000603941 649 ntBASIC3.79□□□□□ -1.8
CCDC28AQ8IWP9 AL031320.1-201ENST00000604177 357 ntBASIC3.79□□□□□ -1.8
CCDC28AQ8IWP9 MIR432-201ENST00000606207 94 ntBASIC3.79□□□□□ -1.8
CCDC28AQ8IWP9 AC068831.8-201ENST00000620171 435 ntBASIC3.79□□□□□ -1.8
CCDC28AQ8IWP9 AC109471.3-201ENST00000625219 233 ntTSL 5 BASIC3.79□□□□□ -1.8
CCDC28AQ8IWP9 TTN-AS1-263ENST00000627527 784 ntTSL 5 BASIC3.79□□□□□ -1.8
CCDC28AQ8IWP9 ABBA01000935.2-201ENST00000637477 838 ntBASIC3.79□□□□□ -1.8
CCDC28AQ8IWP9 MIR4302-201ENST00000638058 60 ntBASIC3.79□□□□□ -1.8
CCDC28AQ8IWP9 DAOA-212ENST00000640578 378 ntAPPRIS ALT2 TSL 5 BASIC3.79□□□□□ -1.8
CCDC28AQ8IWP9 MUC19-205ENST00000454784 24775 ntTSL 5 BASIC3.79□□□□□ -1.8
CCDC28AQ8IWP9 MS4A14-201ENST00000300187 2997 ntAPPRIS P3 TSL 1 (best) BASIC3.79□□□□□ -1.8
CCDC28AQ8IWP9 GDAP2-202ENST00000369443 8828 ntAPPRIS P1 TSL 2 BASIC3.79□□□□□ -1.8
CCDC28AQ8IWP9 SLITRK5-201ENST00000325089 21103 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
CCDC28AQ8IWP9 POSTN-210ENST00000541481 3113 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
CCDC28AQ8IWP9 LRRC53-201ENST00000294635 3859 ntAPPRIS P1 TSL 5 BASIC3.78□□□□□ -1.8
CCDC28AQ8IWP9 DGKH-201ENST00000261491 17261 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
CCDC28AQ8IWP9 WDR63-201ENST00000294664 2995 ntAPPRIS P3 TSL 1 (best) BASIC3.78□□□□□ -1.8
CCDC28AQ8IWP9 SMIM11P1-201ENST00000369586 178 ntBASIC3.78□□□□□ -1.8
CCDC28AQ8IWP9 RNU6-483P-201ENST00000384088 108 ntBASIC3.78□□□□□ -1.8
CCDC28AQ8IWP9 AC009505.1-201ENST00000413151 424 ntTSL 2 BASIC3.78□□□□□ -1.8
CCDC28AQ8IWP9 PSMA4-202ENST00000413382 1019 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
CCDC28AQ8IWP9 NPM1P4-201ENST00000414095 812 ntBASIC3.78□□□□□ -1.8
CCDC28AQ8IWP9 LINC01423-201ENST00000414189 608 ntTSL 3 BASIC3.78□□□□□ -1.8
CCDC28AQ8IWP9 CRYBB2P1-203ENST00000415709 538 ntBASIC3.78□□□□□ -1.8
CCDC28AQ8IWP9 MTND1P23-201ENST00000416931 372 ntBASIC3.78□□□□□ -1.8
CCDC28AQ8IWP9 AL451054.2-201ENST00000420896 202 ntBASIC3.78□□□□□ -1.8
CCDC28AQ8IWP9 AL590783.1-201ENST00000424138 456 ntTSL 2 BASIC3.78□□□□□ -1.8
CCDC28AQ8IWP9 MTCO1P20-201ENST00000425366 358 ntBASIC3.78□□□□□ -1.8
CCDC28AQ8IWP9 AC091493.1-201ENST00000426218 411 ntTSL 3 BASIC3.78□□□□□ -1.8
CCDC28AQ8IWP9 AC093106.2-201ENST00000428212 385 ntBASIC3.78□□□□□ -1.8
CCDC28AQ8IWP9 AL133268.3-201ENST00000428903 577 ntTSL 5 BASIC3.78□□□□□ -1.8
CCDC28AQ8IWP9 LINC01817-201ENST00000429317 564 ntTSL 4 BASIC3.78□□□□□ -1.8
CCDC28AQ8IWP9 AL589986.2-201ENST00000429352 397 ntTSL 2 BASIC3.78□□□□□ -1.8
CCDC28AQ8IWP9 AL356867.1-201ENST00000429623 299 ntBASIC3.78□□□□□ -1.8
CCDC28AQ8IWP9 LINC02257-202ENST00000433576 720 ntTSL 5 BASIC3.78□□□□□ -1.8
CCDC28AQ8IWP9 AL359265.2-201ENST00000434367 631 ntBASIC3.78□□□□□ -1.8
CCDC28AQ8IWP9 AL596276.1-201ENST00000434465 418 ntBASIC3.78□□□□□ -1.8
CCDC28AQ8IWP9 AC018816.1-203ENST00000441894 338 ntTSL 3 BASIC3.78□□□□□ -1.8
CCDC28AQ8IWP9 AC096644.1-201ENST00000446169 390 ntTSL 3 BASIC3.78□□□□□ -1.8
CCDC28AQ8IWP9 AL392046.1-203ENST00000450106 651 ntTSL 2 BASIC3.78□□□□□ -1.8
CCDC28AQ8IWP9 AC144530.1-201ENST00000452862 555 ntBASIC3.78□□□□□ -1.8
CCDC28AQ8IWP9 AP006216.2-201ENST00000457746 333 ntTSL 5 BASIC3.78□□□□□ -1.8
CCDC28AQ8IWP9 RNU6-261P-201ENST00000459506 102 ntBASIC3.78□□□□□ -1.8
CCDC28AQ8IWP9 MRPS17P3-201ENST00000465453 385 ntBASIC3.78□□□□□ -1.8
CCDC28AQ8IWP9 MCCC1-AS1-201ENST00000471731 765 ntTSL 5 BASIC3.78□□□□□ -1.8
CCDC28AQ8IWP9 BACH1-IT1-201ENST00000504298 821 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
CCDC28AQ8IWP9 AC024558.1-201ENST00000505008 528 ntBASIC3.78□□□□□ -1.8
CCDC28AQ8IWP9 AC025554.1-201ENST00000505641 188 ntBASIC3.78□□□□□ -1.8
CCDC28AQ8IWP9 AC025741.1-201ENST00000506100 544 ntTSL 4 BASIC3.78□□□□□ -1.8
CCDC28AQ8IWP9 ADGRL3-AS1-203ENST00000506704 606 ntTSL 5 BASIC3.78□□□□□ -1.8
CCDC28AQ8IWP9 AC092673.1-201ENST00000510203 428 ntTSL 3 BASIC3.78□□□□□ -1.8
CCDC28AQ8IWP9 RNU6-1281P-201ENST00000516223 105 ntBASIC3.78□□□□□ -1.8
CCDC28AQ8IWP9 AP001574.1-201ENST00000519566 546 ntTSL 4 BASIC3.78□□□□□ -1.8
CCDC28AQ8IWP9 AP006587.4-201ENST00000526053 529 ntBASIC3.78□□□□□ -1.8
CCDC28AQ8IWP9 LINC00520-201ENST00000554186 831 ntTSL 5 BASIC3.78□□□□□ -1.8
CCDC28AQ8IWP9 AC055876.1-202ENST00000567053 138 ntBASIC3.78□□□□□ -1.8
CCDC28AQ8IWP9 AC022968.1-201ENST00000567372 442 ntBASIC3.78□□□□□ -1.8
CCDC28AQ8IWP9 MIR4310-201ENST00000582950 57 ntBASIC3.78□□□□□ -1.8
CCDC28AQ8IWP9 SLC14A2-AS1-203ENST00000592286 528 ntTSL 4 BASIC3.78□□□□□ -1.8
CCDC28AQ8IWP9 AC007687.1-201ENST00000602704 304 ntBASIC3.78□□□□□ -1.8
CCDC28AQ8IWP9 AC069307.1-201ENST00000602820 447 ntBASIC3.78□□□□□ -1.8
CCDC28AQ8IWP9 AL162413.1-201ENST00000603198 110 ntBASIC3.78□□□□□ -1.8
CCDC28AQ8IWP9 AC243829.4-201ENST00000620056 701 ntTSL 5 BASIC3.78□□□□□ -1.8
CCDC28AQ8IWP9 AC007998.5-201ENST00000622938 237 ntBASIC3.78□□□□□ -1.8
CCDC28AQ8IWP9 AC093648.1-201ENST00000623546 606 ntBASIC3.78□□□□□ -1.8
CCDC28AQ8IWP9 AC068631.1-221ENST00000626006 592 ntTSL 5 BASIC3.78□□□□□ -1.8
CCDC28AQ8IWP9 RMDN2-AS1-204ENST00000626669 448 ntTSL 5 BASIC3.78□□□□□ -1.8
CCDC28AQ8IWP9 RFX7-201ENST00000559447 10426 ntAPPRIS P5 TSL 5 BASIC3.78□□□□□ -1.8
CCDC28AQ8IWP9 XRCC4-203ENST00000396027 1530 ntAPPRIS ALT1 TSL 5 BASIC3.78□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 83.4 ms