Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 MIR383-201ENST00000362257 73 ntBASIC4.51□□□□□ -1.69
USP39Q53GS9 Y_RNA.259-201ENST00000364619 101 ntBASIC4.51□□□□□ -1.69
USP39Q53GS9 CARD16-202ENST00000375706 686 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
USP39Q53GS9 RNU6-574P-201ENST00000384265 107 ntBASIC4.51□□□□□ -1.69
USP39Q53GS9 DEFB110-202ENST00000393660 189 ntAPPRIS ALT2 TSL 1 (best) BASIC4.51□□□□□ -1.69
USP39Q53GS9 MIR921-201ENST00000401133 56 ntBASIC4.51□□□□□ -1.69
USP39Q53GS9 MRPL42P2-201ENST00000403169 426 ntBASIC4.51□□□□□ -1.69
USP39Q53GS9 RPL5P18-201ENST00000406671 891 ntBASIC4.51□□□□□ -1.69
USP39Q53GS9 RNA5SP317-201ENST00000410176 116 ntBASIC4.51□□□□□ -1.69
USP39Q53GS9 RNA5SP311-201ENST00000411290 116 ntBASIC4.51□□□□□ -1.69
USP39Q53GS9 NAP1L1P2-201ENST00000414182 1089 ntBASIC4.51□□□□□ -1.69
USP39Q53GS9 TPMTP2-201ENST00000414372 726 ntBASIC4.51□□□□□ -1.69
USP39Q53GS9 SRGAP3-AS1-201ENST00000414633 428 ntTSL 2 BASIC4.51□□□□□ -1.69
USP39Q53GS9 AC064875.1-202ENST00000421112 561 ntTSL 4 BASIC4.51□□□□□ -1.69
USP39Q53GS9 Z74021.1-201ENST00000423610 407 ntBASIC4.51□□□□□ -1.69
USP39Q53GS9 AC090617.2-201ENST00000433167 404 ntTSL 3 BASIC4.51□□□□□ -1.69
USP39Q53GS9 AL031663.1-201ENST00000437445 219 ntBASIC4.51□□□□□ -1.69
USP39Q53GS9 CBX1P4-201ENST00000439415 457 ntBASIC4.51□□□□□ -1.69
USP39Q53GS9 LINC00529-201ENST00000443854 241 ntTSL 2 BASIC4.51□□□□□ -1.69
USP39Q53GS9 AC018643.1-201ENST00000445459 414 ntTSL 5 BASIC4.51□□□□□ -1.69
USP39Q53GS9 Z95327.1-201ENST00000446082 482 ntBASIC4.51□□□□□ -1.69
USP39Q53GS9 LINC00456-201ENST00000453862 692 ntTSL 3 BASIC4.51□□□□□ -1.69
USP39Q53GS9 AL133351.1-201ENST00000456189 417 ntTSL 2 BASIC4.51□□□□□ -1.69
USP39Q53GS9 SNORA84-201ENST00000459229 133 ntBASIC4.51□□□□□ -1.69
USP39Q53GS9 Y_RNA.631-201ENST00000459607 101 ntBASIC4.51□□□□□ -1.69
USP39Q53GS9 RPL7P15-201ENST00000461190 712 ntBASIC4.51□□□□□ -1.69
USP39Q53GS9 MRPS17P3-201ENST00000465453 385 ntBASIC4.51□□□□□ -1.69
USP39Q53GS9 AL162742.2-201ENST00000472915 244 ntTSL 5 BASIC4.51□□□□□ -1.69
USP39Q53GS9 AC010255.1-201ENST00000504829 731 ntTSL 5 BASIC4.51□□□□□ -1.69
USP39Q53GS9 AC016598.2-201ENST00000514942 525 ntTSL 5 BASIC4.51□□□□□ -1.69
USP39Q53GS9 RNU4-49P-201ENST00000516080 140 ntBASIC4.51□□□□□ -1.69
USP39Q53GS9 RNA5SP315-201ENST00000516340 116 ntBASIC4.51□□□□□ -1.69
USP39Q53GS9 RNA5SP312-201ENST00000517068 116 ntBASIC4.51□□□□□ -1.69
USP39Q53GS9 IGKV3OR22-2-201ENST00000517943 313 ntBASIC4.51□□□□□ -1.69
USP39Q53GS9 COX6CP8-201ENST00000522620 226 ntBASIC4.51□□□□□ -1.69
USP39Q53GS9 DNAJC8P1-201ENST00000554535 372 ntBASIC4.51□□□□□ -1.69
USP39Q53GS9 AL355073.1-201ENST00000560296 517 ntTSL 4 BASIC4.51□□□□□ -1.69
USP39Q53GS9 AC011468.4-201ENST00000603942 409 ntBASIC4.51□□□□□ -1.69
USP39Q53GS9 AL591034.3-201ENST00000605511 685 ntBASIC4.51□□□□□ -1.69
USP39Q53GS9 AL662844.3-201ENST00000606909 517 ntTSL 5 BASIC4.51□□□□□ -1.69
USP39Q53GS9 AL391813.2-201ENST00000609113 322 ntBASIC4.51□□□□□ -1.69
USP39Q53GS9 AL512625.3-207ENST00000609749 477 ntTSL 3 BASIC4.51□□□□□ -1.69
USP39Q53GS9 LINC01378-205ENST00000615833 158 ntTSL 5 BASIC4.51□□□□□ -1.69
USP39Q53GS9 AC092683.2-203ENST00000618807 788 ntTSL 5 BASIC4.51□□□□□ -1.69
USP39Q53GS9 AC140113.4-201ENST00000622087 222 ntBASIC4.51□□□□□ -1.69
USP39Q53GS9 AC010149.2-201ENST00000637608 315 ntBASIC4.51□□□□□ -1.69
USP39Q53GS9 CASP1-217ENST00000640184 327 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
USP39Q53GS9 UNC13C-201ENST00000260323 12946 ntAPPRIS P1 TSL 5 BASIC4.51□□□□□ -1.69
USP39Q53GS9 TPTE2-203ENST00000390680 1558 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
USP39Q53GS9 OR8D1-202ENST00000641015 8286 ntAPPRIS P1 BASIC4.51□□□□□ -1.69
USP39Q53GS9 OR8D1-203ENST00000641897 8285 ntAPPRIS P1 BASIC4.51□□□□□ -1.69
USP39Q53GS9 AC007529.1-201ENST00000418574 2178 ntBASIC4.51□□□□□ -1.69
USP39Q53GS9 CCDC121-201ENST00000324364 2342 ntAPPRIS P3 TSL 1 (best) BASIC4.51□□□□□ -1.69
USP39Q53GS9 MS4A1-202ENST00000389939 3372 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
USP39Q53GS9 ETV1-205ENST00000405192 4402 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
USP39Q53GS9 OR56A3-205ENST00000641905 4595 ntAPPRIS P1 BASIC4.51□□□□□ -1.69
USP39Q53GS9 TRIQK-212ENST00000520686 1808 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
USP39Q53GS9 AL133243.3-201ENST00000617415 3004 ntBASIC4.51□□□□□ -1.69
USP39Q53GS9 AC092435.4-201ENST00000623012 4159 ntBASIC4.5□□□□□ -1.69
USP39Q53GS9 EIF2AP4-201ENST00000424793 1781 ntBASIC4.5□□□□□ -1.69
USP39Q53GS9 AL122126.1-201ENST00000546905 1318 ntBASIC4.5□□□□□ -1.69
USP39Q53GS9 PCDH11X-205ENST00000373094 9179 ntAPPRIS P4 TSL 1 (best) BASIC4.5□□□□□ -1.69
USP39Q53GS9 MAPK10-303ENST00000641324 3959 ntBASIC4.5□□□□□ -1.69
USP39Q53GS9 Y_RNA.202-201ENST00000364083 110 ntBASIC4.5□□□□□ -1.69
USP39Q53GS9 RNU6-343P-201ENST00000364709 104 ntBASIC4.5□□□□□ -1.69
USP39Q53GS9 RNU1-13P-201ENST00000384499 162 ntBASIC4.5□□□□□ -1.69
USP39Q53GS9 MIR195-201ENST00000385194 87 ntBASIC4.5□□□□□ -1.69
USP39Q53GS9 RNU2-9P-201ENST00000410194 145 ntBASIC4.5□□□□□ -1.69
USP39Q53GS9 RNU2-62P-201ENST00000410868 191 ntBASIC4.5□□□□□ -1.69
USP39Q53GS9 NDUFB4P5-201ENST00000415445 361 ntBASIC4.5□□□□□ -1.69
USP39Q53GS9 AC012506.4-201ENST00000421563 541 ntTSL 4 BASIC4.5□□□□□ -1.69
USP39Q53GS9 CYP1B1-AS1-202ENST00000427168 484 ntTSL 4 BASIC4.5□□□□□ -1.69
USP39Q53GS9 AF124730.1-201ENST00000430001 327 ntTSL 2 BASIC4.5□□□□□ -1.69
USP39Q53GS9 RPL39L-202ENST00000433055 749 ntAPPRIS P1 TSL 2 BASIC4.5□□□□□ -1.69
USP39Q53GS9 AL023693.1-201ENST00000434255 216 ntTSL 5 BASIC4.5□□□□□ -1.69
USP39Q53GS9 FAM103A2P-201ENST00000444122 354 ntBASIC4.5□□□□□ -1.69
USP39Q53GS9 AL035634.1-201ENST00000446768 372 ntTSL 2 BASIC4.5□□□□□ -1.69
USP39Q53GS9 LINC01150-201ENST00000455671 315 ntTSL 1 (best) BASIC4.5□□□□□ -1.69
USP39Q53GS9 AC123023.1-201ENST00000455974 555 ntTSL 4 BASIC4.5□□□□□ -1.69
USP39Q53GS9 HMGN2P26-201ENST00000463169 339 ntBASIC4.5□□□□□ -1.69
USP39Q53GS9 AC117430.1-201ENST00000474711 801 ntTSL 5 BASIC4.5□□□□□ -1.69
USP39Q53GS9 FAM107B-218ENST00000479731 570 ntAPPRIS P1 TSL 3 BASIC4.5□□□□□ -1.69
USP39Q53GS9 AL163540.1-201ENST00000485382 386 ntBASIC4.5□□□□□ -1.69
USP39Q53GS9 DEFB109F-201ENST00000491870 277 ntBASIC4.5□□□□□ -1.69
USP39Q53GS9 EIF4EP3-201ENST00000498782 656 ntBASIC4.5□□□□□ -1.69
USP39Q53GS9 RPL38P4-201ENST00000502376 214 ntBASIC4.5□□□□□ -1.69
USP39Q53GS9 AC034234.1-201ENST00000502993 465 ntTSL 3 BASIC4.5□□□□□ -1.69
USP39Q53GS9 AC104986.1-201ENST00000517978 436 ntBASIC4.5□□□□□ -1.69
USP39Q53GS9 AC078778.1-201ENST00000547177 735 ntTSL 3 BASIC4.5□□□□□ -1.69
USP39Q53GS9 LINC02328-203ENST00000557195 682 ntTSL 3 BASIC4.5□□□□□ -1.69
USP39Q53GS9 HSPE1P3-201ENST00000559254 309 ntBASIC4.5□□□□□ -1.69
USP39Q53GS9 SULT1C2P1-202ENST00000562418 459 ntBASIC4.5□□□□□ -1.69
USP39Q53GS9 HMGB1P6-201ENST00000569046 646 ntBASIC4.5□□□□□ -1.69
USP39Q53GS9 AC005668.1-201ENST00000571142 476 ntBASIC4.5□□□□□ -1.69
USP39Q53GS9 MIR4458-201ENST00000578872 75 ntBASIC4.5□□□□□ -1.69
USP39Q53GS9 LINC01894-201ENST00000580984 487 ntTSL 2 BASIC4.5□□□□□ -1.69
USP39Q53GS9 CCDC178-211ENST00000581852 876 ntAPPRIS ALT2 TSL 2 BASIC4.5□□□□□ -1.69
USP39Q53GS9 NF1P5-201ENST00000588287 448 ntBASIC4.5□□□□□ -1.69
USP39Q53GS9 AC010591.1-201ENST00000603941 649 ntBASIC4.5□□□□□ -1.69
USP39Q53GS9 AC113403.1-201ENST00000604910 193 ntBASIC4.5□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 94.2 ms