Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 C1GALT1C1L-201ENST00000475092 1172 ntAPPRIS P1 BASIC3.28□□□□□ -1.88
PDLIM3Q53GG5 TAF8-207ENST00000482432 556 ntTSL 2 BASIC3.28□□□□□ -1.88
PDLIM3Q53GG5 AC109486.1-201ENST00000486833 374 ntBASIC3.28□□□□□ -1.88
PDLIM3Q53GG5 AC008652.1-201ENST00000505261 469 ntTSL 3 BASIC3.28□□□□□ -1.88
PDLIM3Q53GG5 CSN1S1-202ENST00000505782 871 ntAPPRIS ALT2 TSL 5 BASIC3.28□□□□□ -1.88
PDLIM3Q53GG5 AC022447.3-201ENST00000506865 495 ntBASIC3.28□□□□□ -1.88
PDLIM3Q53GG5 CSN1S1-204ENST00000507772 895 ntAPPRIS ALT2 TSL 5 BASIC3.28□□□□□ -1.88
PDLIM3Q53GG5 AC034234.1-202ENST00000508696 339 ntTSL 3 BASIC3.28□□□□□ -1.88
PDLIM3Q53GG5 AC017037.2-201ENST00000513850 890 ntBASIC3.28□□□□□ -1.88
PDLIM3Q53GG5 RNA5SP49-201ENST00000516450 115 ntBASIC3.28□□□□□ -1.88
PDLIM3Q53GG5 AC027018.1-201ENST00000533978 396 ntTSL 4 BASIC3.28□□□□□ -1.88
PDLIM3Q53GG5 AC013437.1-201ENST00000549878 414 ntTSL 3 BASIC3.28□□□□□ -1.88
PDLIM3Q53GG5 AL359233.1-201ENST00000554029 364 ntTSL 3 BASIC3.28□□□□□ -1.88
PDLIM3Q53GG5 RPL23AP87-202ENST00000573039 466 ntBASIC3.28□□□□□ -1.88
PDLIM3Q53GG5 AC008507.1-201ENST00000587506 734 ntBASIC3.28□□□□□ -1.88
PDLIM3Q53GG5 BCRP9-201ENST00000605312 388 ntBASIC3.28□□□□□ -1.88
PDLIM3Q53GG5 AC016747.2-202ENST00000607743 332 ntTSL 5 BASIC3.28□□□□□ -1.88
PDLIM3Q53GG5 LINC00310-205ENST00000609062 863 ntTSL 5 BASIC3.28□□□□□ -1.88
PDLIM3Q53GG5 AL591424.2-201ENST00000617023 128 ntBASIC3.28□□□□□ -1.88
PDLIM3Q53GG5 MALAT1-210ENST00000617489 318 ntTSL 2 BASIC3.28□□□□□ -1.88
PDLIM3Q53GG5 AL596245.1-201ENST00000618994 362 ntBASIC3.28□□□□□ -1.88
PDLIM3Q53GG5 AL034408.1-202ENST00000636088 415 ntBASIC3.28□□□□□ -1.88
PDLIM3Q53GG5 FAM35DP-201ENST00000323387 2712 ntBASIC3.28□□□□□ -1.88
PDLIM3Q53GG5 CADM2-AS1-201ENST00000476021 2656 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
PDLIM3Q53GG5 AL161457.2-203ENST00000590767 2663 ntTSL 5 BASIC3.28□□□□□ -1.88
PDLIM3Q53GG5 PIGN-240ENST00000639912 6530 ntTSL 5 BASIC3.28□□□□□ -1.88
PDLIM3Q53GG5 C12orf4-201ENST00000261250 3826 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
PDLIM3Q53GG5 AC079160.1-202ENST00000508406 2795 ntTSL 5 BASIC3.28□□□□□ -1.89
PDLIM3Q53GG5 AC244517.1-201ENST00000606030 2086 ntBASIC3.28□□□□□ -1.89
PDLIM3Q53GG5 POLK-217ENST00000515295 1438 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
PDLIM3Q53GG5 IQGAP2-202ENST00000379730 5442 ntTSL 5 BASIC3.27□□□□□ -1.89
PDLIM3Q53GG5 LBR-202ENST00000338179 3812 ntAPPRIS P1 TSL 5 BASIC3.27□□□□□ -1.89
PDLIM3Q53GG5 AC005183.1-201ENST00000603687 1979 ntBASIC3.27□□□□□ -1.89
PDLIM3Q53GG5 KCNJ16-209ENST00000589377 3684 ntAPPRIS P1 TSL 5 BASIC3.27□□□□□ -1.89
PDLIM3Q53GG5 MUC7-201ENST00000304887 2443 ntAPPRIS P2 TSL 1 (best) BASIC3.27□□□□□ -1.89
PDLIM3Q53GG5 OR52E6-201ENST00000329322 970 ntAPPRIS P1 BASIC3.27□□□□□ -1.89
PDLIM3Q53GG5 RNU4-21P-201ENST00000362802 126 ntBASIC3.27□□□□□ -1.89
PDLIM3Q53GG5 TRAV8-1-201ENST00000390430 473 ntAPPRIS P1 BASIC3.27□□□□□ -1.89
PDLIM3Q53GG5 MIR1305-201ENST00000408300 86 ntBASIC3.27□□□□□ -1.89
PDLIM3Q53GG5 AL023581.1-201ENST00000423500 455 ntTSL 2 BASIC3.27□□□□□ -1.89
PDLIM3Q53GG5 AL096799.1-201ENST00000425900 381 ntTSL 2 BASIC3.27□□□□□ -1.89
PDLIM3Q53GG5 AC004160.1-205ENST00000428967 577 ntTSL 4 BASIC3.27□□□□□ -1.89
PDLIM3Q53GG5 AL512649.1-201ENST00000428997 581 ntBASIC3.27□□□□□ -1.89
PDLIM3Q53GG5 LINC00392-201ENST00000430033 557 ntTSL 3 BASIC3.27□□□□□ -1.89
PDLIM3Q53GG5 AC244035.1-201ENST00000430042 390 ntBASIC3.27□□□□□ -1.89
PDLIM3Q53GG5 AL590302.1-201ENST00000431017 359 ntTSL 2 BASIC3.27□□□□□ -1.89
PDLIM3Q53GG5 Z83839.2-201ENST00000436294 274 ntTSL 5 BASIC3.27□□□□□ -1.89
PDLIM3Q53GG5 AL451129.1-201ENST00000437471 285 ntTSL 3 BASIC3.27□□□□□ -1.89
PDLIM3Q53GG5 AL354977.1-201ENST00000438147 679 ntTSL 5 BASIC3.27□□□□□ -1.89
PDLIM3Q53GG5 AL360221.1-201ENST00000445989 335 ntBASIC3.27□□□□□ -1.89
PDLIM3Q53GG5 AP001486.1-201ENST00000463339 476 ntBASIC3.27□□□□□ -1.89
PDLIM3Q53GG5 AC116337.2-201ENST00000477662 156 ntBASIC3.27□□□□□ -1.89
PDLIM3Q53GG5 AP000797.1-201ENST00000478870 387 ntBASIC3.27□□□□□ -1.89
PDLIM3Q53GG5 AL358832.1-201ENST00000497800 389 ntBASIC3.27□□□□□ -1.89
PDLIM3Q53GG5 AC097372.3-201ENST00000503593 522 ntTSL 3 BASIC3.27□□□□□ -1.89
PDLIM3Q53GG5 LINC01846-201ENST00000505908 651 ntTSL 5 BASIC3.27□□□□□ -1.89
PDLIM3Q53GG5 BTF3L4P4-201ENST00000506381 449 ntBASIC3.27□□□□□ -1.89
PDLIM3Q53GG5 AC113404.3-201ENST00000506621 555 ntTSL 5 BASIC3.27□□□□□ -1.89
PDLIM3Q53GG5 RNA5SP519-201ENST00000516480 119 ntBASIC3.27□□□□□ -1.89
PDLIM3Q53GG5 AP003472.1-201ENST00000519844 644 ntTSL 3 BASIC3.27□□□□□ -1.89
PDLIM3Q53GG5 NAT2-202ENST00000520116 716 ntTSL 3 BASIC3.27□□□□□ -1.89
PDLIM3Q53GG5 AC008415.1-201ENST00000522189 734 ntTSL 5 BASIC3.27□□□□□ -1.89
PDLIM3Q53GG5 MAL2-203ENST00000534619 578 ntTSL 4 BASIC3.27□□□□□ -1.89
PDLIM3Q53GG5 LINC02235-201ENST00000534675 466 ntTSL 5 BASIC3.27□□□□□ -1.89
PDLIM3Q53GG5 AC091489.2-201ENST00000566263 604 ntBASIC3.27□□□□□ -1.89
PDLIM3Q53GG5 AP005059.2-201ENST00000577527 578 ntTSL 3 BASIC3.27□□□□□ -1.89
PDLIM3Q53GG5 AC012417.1-201ENST00000582307 1039 ntBASIC3.27□□□□□ -1.89
PDLIM3Q53GG5 SNORD84-203ENST00000584275 78 ntBASIC3.27□□□□□ -1.89
PDLIM3Q53GG5 ZNF573-209ENST00000585724 453 ntTSL 5 BASIC3.27□□□□□ -1.89
PDLIM3Q53GG5 TPMTP1-201ENST00000592307 737 ntBASIC3.27□□□□□ -1.89
PDLIM3Q53GG5 AC024603.1-201ENST00000597938 592 ntTSL 4 BASIC3.27□□□□□ -1.89
PDLIM3Q53GG5 AC012360.2-201ENST00000609349 391 ntBASIC3.27□□□□□ -1.89
PDLIM3Q53GG5 MIR181A1HG-203ENST00000436880 2308 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
PDLIM3Q53GG5 AGL-205ENST00000370163 7166 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
PDLIM3Q53GG5 OR10AG1-202ENST00000641071 2807 ntAPPRIS P1 BASIC3.27□□□□□ -1.89
PDLIM3Q53GG5 KIAA1109-203ENST00000388738 15574 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
PDLIM3Q53GG5 CLIC2-202ENST00000369449 2655 ntAPPRIS P1 TSL 1 (best) BASIC3.26□□□□□ -1.89
PDLIM3Q53GG5 BCLAF1-213ENST00000530767 4186 ntAPPRIS ALT2 TSL 1 (best) BASIC3.26□□□□□ -1.89
PDLIM3Q53GG5 AKAP6-201ENST00000280979 15006 ntAPPRIS P1 TSL 1 (best) BASIC3.26□□□□□ -1.89
PDLIM3Q53GG5 C5orf42-205ENST00000508244 11062 ntAPPRIS P2 TSL 5 BASIC3.26□□□□□ -1.89
PDLIM3Q53GG5 NCAPGP1-201ENST00000505112 1814 ntBASIC3.26□□□□□ -1.89
PDLIM3Q53GG5 FER-201ENST00000281092 12119 ntAPPRIS P1 TSL 1 (best) BASIC3.26□□□□□ -1.89
PDLIM3Q53GG5 AC006378.2-201ENST00000623178 2476 ntBASIC3.26□□□□□ -1.89
PDLIM3Q53GG5 RTN4-209ENST00000405240 4061 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
PDLIM3Q53GG5 SNORA60-201ENST00000362396 134 ntBASIC3.26□□□□□ -1.89
PDLIM3Q53GG5 RNU6-533P-201ENST00000384144 107 ntBASIC3.26□□□□□ -1.89
PDLIM3Q53GG5 RNU6-114P-201ENST00000384704 105 ntBASIC3.26□□□□□ -1.89
PDLIM3Q53GG5 RNY3P10-201ENST00000384764 102 ntBASIC3.26□□□□□ -1.89
PDLIM3Q53GG5 MIR1251-201ENST00000408552 70 ntBASIC3.26□□□□□ -1.89
PDLIM3Q53GG5 RN7SKP182-201ENST00000410772 298 ntBASIC3.26□□□□□ -1.89
PDLIM3Q53GG5 MAGI2-AS2-201ENST00000411616 476 ntTSL 2 BASIC3.26□□□□□ -1.89
PDLIM3Q53GG5 REV3L-IT1-201ENST00000411895 382 ntTSL 5 BASIC3.26□□□□□ -1.89
PDLIM3Q53GG5 MYO16-AS2-201ENST00000412809 436 ntTSL 3 BASIC3.26□□□□□ -1.89
PDLIM3Q53GG5 HMGB3P23-201ENST00000414981 585 ntBASIC3.26□□□□□ -1.89
PDLIM3Q53GG5 AC093865.1-201ENST00000415387 433 ntTSL 3 BASIC3.26□□□□□ -1.89
PDLIM3Q53GG5 SSXP9-201ENST00000417503 292 ntBASIC3.26□□□□□ -1.89
PDLIM3Q53GG5 AL355303.1-201ENST00000428920 680 ntTSL 3 BASIC3.26□□□□□ -1.89
PDLIM3Q53GG5 AL078601.2-201ENST00000429444 474 ntTSL 2 BASIC3.26□□□□□ -1.89
PDLIM3Q53GG5 AC017048.2-201ENST00000431455 822 ntTSL 3 BASIC3.26□□□□□ -1.89
PDLIM3Q53GG5 RPL22P17-201ENST00000438729 315 ntBASIC3.26□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 10.1 ms