Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 ATF2-204ENST00000409437 3697 ntTSL 5 BASIC3.27□□□□□ -1.89
CCDC40Q4G0X9 PP2D1-202ENST00000389050 2151 ntAPPRIS P1 TSL 5 BASIC3.27□□□□□ -1.89
CCDC40Q4G0X9 HMGN5-201ENST00000358130 2126 ntAPPRIS P2 TSL 2 BASIC3.27□□□□□ -1.89
CCDC40Q4G0X9 SNORA63.1-201ENST00000362493 131 ntBASIC3.27□□□□□ -1.89
CCDC40Q4G0X9 SNORA1.3-201ENST00000384676 136 ntBASIC3.27□□□□□ -1.89
CCDC40Q4G0X9 HMGB1P17-201ENST00000403495 628 ntBASIC3.27□□□□□ -1.89
CCDC40Q4G0X9 OFD1P11Y-201ENST00000418213 1177 ntBASIC3.27□□□□□ -1.89
CCDC40Q4G0X9 GNGT1-202ENST00000428834 731 ntTSL 3 BASIC3.27□□□□□ -1.89
CCDC40Q4G0X9 FCF1P6-201ENST00000456841 595 ntBASIC3.27□□□□□ -1.89
CCDC40Q4G0X9 AF129075.1-201ENST00000457162 794 ntTSL 3 BASIC3.27□□□□□ -1.89
CCDC40Q4G0X9 RPL21P41-201ENST00000459863 264 ntBASIC3.27□□□□□ -1.89
CCDC40Q4G0X9 AC121764.2-201ENST00000469806 587 ntTSL 2 BASIC3.27□□□□□ -1.89
CCDC40Q4G0X9 RPS29P2-201ENST00000479278 136 ntBASIC3.27□□□□□ -1.89
CCDC40Q4G0X9 RN7SL499P-201ENST00000481141 276 ntBASIC3.27□□□□□ -1.89
CCDC40Q4G0X9 RPL7P23-201ENST00000493874 747 ntBASIC3.27□□□□□ -1.89
CCDC40Q4G0X9 AL358832.1-201ENST00000497800 389 ntBASIC3.27□□□□□ -1.89
CCDC40Q4G0X9 MTND3P3-201ENST00000505004 126 ntBASIC3.27□□□□□ -1.89
CCDC40Q4G0X9 PANCR-202ENST00000513690 448 ntTSL 2 BASIC3.27□□□□□ -1.89
CCDC40Q4G0X9 RNY4P37-201ENST00000516225 96 ntBASIC3.27□□□□□ -1.89
CCDC40Q4G0X9 SNORA70.16-201ENST00000516390 95 ntBASIC3.27□□□□□ -1.89
CCDC40Q4G0X9 AC022360.2-202ENST00000517308 407 ntTSL 3 BASIC3.27□□□□□ -1.89
CCDC40Q4G0X9 NCRNA00250-201ENST00000519500 519 ntTSL 4 BASIC3.27□□□□□ -1.89
CCDC40Q4G0X9 FAM60DP-201ENST00000524174 632 ntBASIC3.27□□□□□ -1.89
CCDC40Q4G0X9 OR10V3P-201ENST00000525712 725 ntBASIC3.27□□□□□ -1.89
CCDC40Q4G0X9 ZKSCAN7P1-201ENST00000543668 673 ntBASIC3.27□□□□□ -1.89
CCDC40Q4G0X9 AC007619.1-201ENST00000544086 412 ntTSL 5 BASIC3.27□□□□□ -1.89
CCDC40Q4G0X9 DNAJC8P1-201ENST00000554535 372 ntBASIC3.27□□□□□ -1.89
CCDC40Q4G0X9 AADACP1-206ENST00000561502 1193 ntBASIC3.27□□□□□ -1.89
CCDC40Q4G0X9 BLOC1S6-207ENST00000565216 573 ntTSL 3 BASIC3.27□□□□□ -1.89
CCDC40Q4G0X9 MIR5004-201ENST00000579078 107 ntBASIC3.27□□□□□ -1.89
CCDC40Q4G0X9 AC010127.1-205ENST00000595268 567 ntTSL 5 BASIC3.27□□□□□ -1.89
CCDC40Q4G0X9 VN1R78P-201ENST00000597393 564 ntBASIC3.27□□□□□ -1.89
CCDC40Q4G0X9 BNIP3P33-201ENST00000598912 569 ntBASIC3.27□□□□□ -1.89
CCDC40Q4G0X9 AC021749.1-201ENST00000604322 607 ntBASIC3.27□□□□□ -1.89
CCDC40Q4G0X9 AC097504.2-201ENST00000608088 454 ntBASIC3.27□□□□□ -1.89
CCDC40Q4G0X9 AC004777.1-201ENST00000624317 287 ntBASIC3.27□□□□□ -1.89
CCDC40Q4G0X9 AC009812.4-201ENST00000569134 1805 ntBASIC3.27□□□□□ -1.89
CCDC40Q4G0X9 BMP5-201ENST00000370830 3952 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
CCDC40Q4G0X9 NEDD4-208ENST00000508342 7235 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
CCDC40Q4G0X9 NXPE1-204ENST00000536271 2289 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
CCDC40Q4G0X9 MUC7-203ENST00000456088 2479 ntAPPRIS P2 TSL 4 BASIC3.27□□□□□ -1.89
CCDC40Q4G0X9 MGAT4C-211ENST00000621808 2582 ntAPPRIS P1 TSL 1 (best) BASIC3.26□□□□□ -1.89
CCDC40Q4G0X9 OR5AC2-201ENST00000358642 930 ntAPPRIS P1 BASIC3.26□□□□□ -1.89
CCDC40Q4G0X9 SNORA38.1-201ENST00000364172 131 ntBASIC3.26□□□□□ -1.89
CCDC40Q4G0X9 U8.9-201ENST00000365667 134 ntBASIC3.26□□□□□ -1.89
CCDC40Q4G0X9 CUBN-201ENST00000377823 705 ntTSL 3 BASIC3.26□□□□□ -1.89
CCDC40Q4G0X9 MIR620-201ENST00000385232 95 ntBASIC3.26□□□□□ -1.89
CCDC40Q4G0X9 RPL5P18-201ENST00000406671 891 ntBASIC3.26□□□□□ -1.89
CCDC40Q4G0X9 RNU2-43P-201ENST00000410306 190 ntBASIC3.26□□□□□ -1.89
CCDC40Q4G0X9 DIAPH3-AS1-201ENST00000422052 428 ntTSL 3 BASIC3.26□□□□□ -1.89
CCDC40Q4G0X9 AL139281.1-201ENST00000422120 335 ntBASIC3.26□□□□□ -1.89
CCDC40Q4G0X9 TMEM167AP1-201ENST00000423409 219 ntBASIC3.26□□□□□ -1.89
CCDC40Q4G0X9 AL080248.1-201ENST00000428954 388 ntTSL 3 BASIC3.26□□□□□ -1.89
CCDC40Q4G0X9 ZMYM4-AS1-201ENST00000432683 459 ntTSL 2 BASIC3.26□□□□□ -1.89
CCDC40Q4G0X9 SETP8-201ENST00000435341 628 ntBASIC3.26□□□□□ -1.89
CCDC40Q4G0X9 AL161937.1-201ENST00000444478 425 ntTSL 3 BASIC3.26□□□□□ -1.89
CCDC40Q4G0X9 OFD1P7Y-201ENST00000454643 1155 ntBASIC3.26□□□□□ -1.89
CCDC40Q4G0X9 AL157400.4-201ENST00000455699 667 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
CCDC40Q4G0X9 RN7SL807P-201ENST00000470923 297 ntBASIC3.26□□□□□ -1.89
CCDC40Q4G0X9 AP004217.1-201ENST00000480579 346 ntBASIC3.26□□□□□ -1.89
CCDC40Q4G0X9 AC006445.1-201ENST00000491925 405 ntBASIC3.26□□□□□ -1.89
CCDC40Q4G0X9 ARL4AP2-201ENST00000507378 601 ntBASIC3.26□□□□□ -1.89
CCDC40Q4G0X9 XKRY-201ENST00000510392 1100 ntBASIC3.26□□□□□ -1.89
CCDC40Q4G0X9 RNA5SP76-201ENST00000516277 87 ntBASIC3.26□□□□□ -1.89
CCDC40Q4G0X9 AC109466.1-211ENST00000519327 496 ntTSL 3 BASIC3.26□□□□□ -1.89
CCDC40Q4G0X9 AC012413.1-201ENST00000521294 519 ntTSL 2 BASIC3.26□□□□□ -1.89
CCDC40Q4G0X9 AC021451.1-201ENST00000523498 1129 ntBASIC3.26□□□□□ -1.89
CCDC40Q4G0X9 LINC02562-201ENST00000561705 785 ntTSL 2 BASIC3.26□□□□□ -1.89
CCDC40Q4G0X9 AC009117.2-201ENST00000565374 504 ntTSL 3 BASIC3.26□□□□□ -1.89
CCDC40Q4G0X9 TMF1P1-201ENST00000576058 373 ntBASIC3.26□□□□□ -1.89
CCDC40Q4G0X9 AC013444.2-201ENST00000603317 787 ntBASIC3.26□□□□□ -1.89
CCDC40Q4G0X9 AL390208.1-201ENST00000605885 644 ntBASIC3.26□□□□□ -1.89
CCDC40Q4G0X9 AL627309.6-201ENST00000606857 840 ntBASIC3.26□□□□□ -1.89
CCDC40Q4G0X9 TUG1_1.1-201ENST00000610654 145 ntBASIC3.26□□□□□ -1.89
CCDC40Q4G0X9 ADARB1-213ENST00000611195 159 ntTSL 5 BASIC3.26□□□□□ -1.89
CCDC40Q4G0X9 AL596245.1-201ENST00000618994 362 ntBASIC3.26□□□□□ -1.89
CCDC40Q4G0X9 CRYM-AS1-204ENST00000637983 556 ntBASIC3.26□□□□□ -1.89
CCDC40Q4G0X9 AL356473.1-201ENST00000406203 1408 ntBASIC3.26□□□□□ -1.89
CCDC40Q4G0X9 TRIQK-201ENST00000378861 1596 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
CCDC40Q4G0X9 OR9G4-203ENST00000641581 2603 ntAPPRIS P1 BASIC3.25□□□□□ -1.89
CCDC40Q4G0X9 PRKG2-206ENST00000545647 3852 ntTSL 5 BASIC3.25□□□□□ -1.89
CCDC40Q4G0X9 ZNF280C-201ENST00000370978 4634 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
CCDC40Q4G0X9 NACA3P-201ENST00000359690 648 ntBASIC3.25□□□□□ -1.89
CCDC40Q4G0X9 SNORA71.1-201ENST00000364523 117 ntBASIC3.25□□□□□ -1.89
CCDC40Q4G0X9 SNORA54-201ENST00000384281 123 ntBASIC3.25□□□□□ -1.89
CCDC40Q4G0X9 MIR34B-201ENST00000385076 84 ntBASIC3.25□□□□□ -1.89
CCDC40Q4G0X9 VN1R51P-201ENST00000411675 945 ntBASIC3.25□□□□□ -1.89
CCDC40Q4G0X9 AL353148.1-204ENST00000426752 477 ntTSL 5 BASIC3.25□□□□□ -1.89
CCDC40Q4G0X9 AC024082.2-201ENST00000434771 238 ntBASIC3.25□□□□□ -1.89
CCDC40Q4G0X9 AL359706.1-201ENST00000437748 315 ntTSL 3 BASIC3.25□□□□□ -1.89
CCDC40Q4G0X9 MTND4P6-201ENST00000438297 472 ntBASIC3.25□□□□□ -1.89
CCDC40Q4G0X9 AL020998.1-201ENST00000444923 229 ntTSL 3 BASIC3.25□□□□□ -1.89
CCDC40Q4G0X9 MTCO2P25-201ENST00000447065 681 ntBASIC3.25□□□□□ -1.89
CCDC40Q4G0X9 DCLRE1CP1-201ENST00000454630 470 ntBASIC3.25□□□□□ -1.89
CCDC40Q4G0X9 AL359385.1-201ENST00000456509 365 ntBASIC3.25□□□□□ -1.89
CCDC40Q4G0X9 MTND2P39-201ENST00000457230 764 ntBASIC3.25□□□□□ -1.89
CCDC40Q4G0X9 AL031183.1-201ENST00000457667 207 ntBASIC3.25□□□□□ -1.89
CCDC40Q4G0X9 AC117440.1-201ENST00000474107 571 ntBASIC3.25□□□□□ -1.89
CCDC40Q4G0X9 RPS3AP43-201ENST00000479743 781 ntBASIC3.25□□□□□ -1.89
CCDC40Q4G0X9 AC006499.2-201ENST00000513470 337 ntBASIC3.25□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 122.9 ms