Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 ACYP2-208ENST00000606865 674 ntTSL 5 BASIC4.08□□□□□ -1.76
PTCHD3Q3KNS1 RDM1-219ENST00000615378 542 ntTSL 3 BASIC4.08□□□□□ -1.76
PTCHD3Q3KNS1 AC002553.4-201ENST00000616896 331 ntBASIC4.08□□□□□ -1.76
PTCHD3Q3KNS1 MALAT1-210ENST00000617489 318 ntTSL 2 BASIC4.08□□□□□ -1.76
PTCHD3Q3KNS1 MIR7702-201ENST00000621931 59 ntBASIC4.08□□□□□ -1.76
PTCHD3Q3KNS1 ALG13-230ENST00000623189 458 ntTSL 3 BASIC4.08□□□□□ -1.76
PTCHD3Q3KNS1 AL008636.1-201ENST00000625038 1018 ntBASIC4.08□□□□□ -1.76
PTCHD3Q3KNS1 LINC01090-203ENST00000632331 466 ntTSL 5 BASIC4.08□□□□□ -1.76
PTCHD3Q3KNS1 ABBA01000935.2-201ENST00000637477 838 ntBASIC4.08□□□□□ -1.76
PTCHD3Q3KNS1 ADGRL3-216ENST00000514157 4789 ntTSL 5 BASIC4.08□□□□□ -1.76
PTCHD3Q3KNS1 SCN3A-209ENST00000639244 8854 ntTSL 5 BASIC4.08□□□□□ -1.76
PTCHD3Q3KNS1 PCDH15-203ENST00000373955 4230 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
PTCHD3Q3KNS1 ADAM7-201ENST00000175238 3367 ntAPPRIS P2 TSL 1 (best) BASIC4.08□□□□□ -1.76
PTCHD3Q3KNS1 ZNF510-201ENST00000223428 5154 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
PTCHD3Q3KNS1 SPAM1-202ENST00000340011 2349 ntAPPRIS P4 TSL 1 (best) BASIC4.07□□□□□ -1.76
PTCHD3Q3KNS1 PIGW-206ENST00000620233 2264 ntAPPRIS P1 TSL 2 BASIC4.07□□□□□ -1.76
PTCHD3Q3KNS1 EIF2A-201ENST00000273435 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC4.07□□□□□ -1.76
PTCHD3Q3KNS1 OR2L3-201ENST00000359959 2792 ntAPPRIS P1 BASIC4.07□□□□□ -1.76
PTCHD3Q3KNS1 LINC02232-201ENST00000509932 4079 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
PTCHD3Q3KNS1 TAS2R3-201ENST00000247879 1101 ntAPPRIS P1 BASIC4.07□□□□□ -1.76
PTCHD3Q3KNS1 DEFB114-201ENST00000322066 253 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
PTCHD3Q3KNS1 RNU6-1120P-201ENST00000362988 108 ntBASIC4.07□□□□□ -1.76
PTCHD3Q3KNS1 Y_RNA.159-201ENST00000363674 87 ntBASIC4.07□□□□□ -1.76
PTCHD3Q3KNS1 RNU6-263P-201ENST00000363811 107 ntBASIC4.07□□□□□ -1.76
PTCHD3Q3KNS1 RNY3P13-201ENST00000365542 102 ntBASIC4.07□□□□□ -1.76
PTCHD3Q3KNS1 CRP-202ENST00000368110 667 ntTSL 3 BASIC4.07□□□□□ -1.76
PTCHD3Q3KNS1 RNU11-4P-201ENST00000391149 133 ntBASIC4.07□□□□□ -1.76
PTCHD3Q3KNS1 SNORA11-201ENST00000408789 128 ntBASIC4.07□□□□□ -1.76
PTCHD3Q3KNS1 LINC00894-201ENST00000413076 403 ntTSL 3 BASIC4.07□□□□□ -1.76
PTCHD3Q3KNS1 AC104462.1-201ENST00000414565 447 ntTSL 2 BASIC4.07□□□□□ -1.76
PTCHD3Q3KNS1 AC092447.6-201ENST00000414578 210 ntBASIC4.07□□□□□ -1.76
PTCHD3Q3KNS1 RPS7P15-201ENST00000415804 584 ntBASIC4.07□□□□□ -1.76
PTCHD3Q3KNS1 CCDC58P2-201ENST00000417131 366 ntBASIC4.07□□□□□ -1.76
PTCHD3Q3KNS1 MTATP6P18-201ENST00000417994 673 ntBASIC4.07□□□□□ -1.76
PTCHD3Q3KNS1 AC002465.1-201ENST00000436097 349 ntTSL 2 BASIC4.07□□□□□ -1.76
PTCHD3Q3KNS1 AL138799.2-201ENST00000439024 343 ntTSL 2 BASIC4.07□□□□□ -1.76
PTCHD3Q3KNS1 AC079781.2-201ENST00000446424 169 ntBASIC4.07□□□□□ -1.76
PTCHD3Q3KNS1 TPT1P14-201ENST00000448018 505 ntBASIC4.07□□□□□ -1.76
PTCHD3Q3KNS1 ZEB1-AS1-204ENST00000450834 576 ntTSL 3 BASIC4.07□□□□□ -1.76
PTCHD3Q3KNS1 AC022364.2-201ENST00000457963 554 ntBASIC4.07□□□□□ -1.76
PTCHD3Q3KNS1 AC096554.1-201ENST00000458182 529 ntTSL 5 BASIC4.07□□□□□ -1.76
PTCHD3Q3KNS1 RN7SL585P-201ENST00000470538 280 ntBASIC4.07□□□□□ -1.76
PTCHD3Q3KNS1 ATP5J2-209ENST00000488775 306 ntTSL 2 BASIC4.07□□□□□ -1.76
PTCHD3Q3KNS1 C4orf33-204ENST00000502887 1126 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
PTCHD3Q3KNS1 LINC02101-201ENST00000505861 725 ntTSL 4 BASIC4.07□□□□□ -1.76
PTCHD3Q3KNS1 RPS3A-208ENST00000509736 576 ntTSL 2 BASIC4.07□□□□□ -1.76
PTCHD3Q3KNS1 LINC02149-201ENST00000511443 558 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
PTCHD3Q3KNS1 RNU6-1095P-201ENST00000516148 108 ntBASIC4.07□□□□□ -1.76
PTCHD3Q3KNS1 MIR2116-201ENST00000517221 80 ntBASIC4.07□□□□□ -1.76
PTCHD3Q3KNS1 AC090572.1-201ENST00000519251 160 ntBASIC4.07□□□□□ -1.76
PTCHD3Q3KNS1 HMGN1P28-201ENST00000521340 364 ntBASIC4.07□□□□□ -1.76
PTCHD3Q3KNS1 AC113145.1-201ENST00000522408 412 ntTSL 5 BASIC4.07□□□□□ -1.76
PTCHD3Q3KNS1 AP002833.1-201ENST00000530572 566 ntTSL 3 BASIC4.07□□□□□ -1.76
PTCHD3Q3KNS1 AC118273.2-201ENST00000532092 465 ntBASIC4.07□□□□□ -1.76
PTCHD3Q3KNS1 AC046130.2-201ENST00000537655 794 ntTSL 3 BASIC4.07□□□□□ -1.76
PTCHD3Q3KNS1 LINC02459-201ENST00000551761 474 ntTSL 3 BASIC4.07□□□□□ -1.76
PTCHD3Q3KNS1 AL512360.1-201ENST00000555346 234 ntBASIC4.07□□□□□ -1.76
PTCHD3Q3KNS1 SUB1P2-201ENST00000556401 297 ntBASIC4.07□□□□□ -1.76
PTCHD3Q3KNS1 AL359212.1-201ENST00000556608 614 ntBASIC4.07□□□□□ -1.76
PTCHD3Q3KNS1 AC027514.2-201ENST00000591014 637 ntTSL 3 BASIC4.07□□□□□ -1.76
PTCHD3Q3KNS1 BNIP3P33-201ENST00000598912 569 ntBASIC4.07□□□□□ -1.76
PTCHD3Q3KNS1 VN1R85P-201ENST00000601587 426 ntBASIC4.07□□□□□ -1.76
PTCHD3Q3KNS1 AL161729.3-201ENST00000603533 673 ntBASIC4.07□□□□□ -1.76
PTCHD3Q3KNS1 TUG1_1.1-201ENST00000610654 145 ntBASIC4.07□□□□□ -1.76
PTCHD3Q3KNS1 AC093838.1-201ENST00000613014 469 ntBASIC4.07□□□□□ -1.76
PTCHD3Q3KNS1 AC139792.3-201ENST00000623525 224 ntBASIC4.07□□□□□ -1.76
PTCHD3Q3KNS1 AC008785.1-201ENST00000624475 456 ntBASIC4.07□□□□□ -1.76
PTCHD3Q3KNS1 AL591441.1-201ENST00000618108 2247 ntTSL 2 BASIC4.07□□□□□ -1.76
PTCHD3Q3KNS1 ANO3-204ENST00000531568 3117 ntAPPRIS ALT2 TSL 2 BASIC4.07□□□□□ -1.76
PTCHD3Q3KNS1 AC015813.1-202ENST00000577267 4056 ntTSL 2 BASIC4.07□□□□□ -1.76
PTCHD3Q3KNS1 MYNN-202ENST00000356716 2833 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
PTCHD3Q3KNS1 WDR72-204ENST00000559418 3602 ntTSL 5 BASIC4.07□□□□□ -1.76
PTCHD3Q3KNS1 PNISR-201ENST00000369239 5112 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
PTCHD3Q3KNS1 CHORDC1-206ENST00000529987 1698 ntTSL 3 BASIC4.06□□□□□ -1.76
PTCHD3Q3KNS1 DTNA-208ENST00000554864 1680 ntAPPRIS ALT2 TSL 1 (best) BASIC4.06□□□□□ -1.76
PTCHD3Q3KNS1 NLGN1-206ENST00000457714 8242 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
PTCHD3Q3KNS1 BRCA2-201ENST00000380152 11986 ntAPPRIS P1 TSL 5 BASIC4.06□□□□□ -1.76
PTCHD3Q3KNS1 PHEX-201ENST00000379374 6172 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
PTCHD3Q3KNS1 MTCO1P9-201ENST00000505577 1534 ntBASIC4.06□□□□□ -1.76
PTCHD3Q3KNS1 RAP1GDS1-205ENST00000408927 3681 ntAPPRIS P3 TSL 2 BASIC4.06□□□□□ -1.76
PTCHD3Q3KNS1 SPRR2C-201ENST00000290702 219 ntBASIC4.06□□□□□ -1.76
PTCHD3Q3KNS1 OR1S2-201ENST00000302592 978 ntBASIC4.06□□□□□ -1.76
PTCHD3Q3KNS1 HSFY1-202ENST00000309834 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC4.06□□□□□ -1.76
PTCHD3Q3KNS1 HSFY2-202ENST00000344884 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC4.06□□□□□ -1.76
PTCHD3Q3KNS1 RNA5SP388-201ENST00000362584 119 ntBASIC4.06□□□□□ -1.76
PTCHD3Q3KNS1 RNU6-223P-201ENST00000362830 107 ntBASIC4.06□□□□□ -1.76
PTCHD3Q3KNS1 WFDC6-202ENST00000372670 620 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
PTCHD3Q3KNS1 RNU1-39P-201ENST00000383897 165 ntBASIC4.06□□□□□ -1.76
PTCHD3Q3KNS1 RNU1-13P-201ENST00000384499 162 ntBASIC4.06□□□□□ -1.76
PTCHD3Q3KNS1 AL603766.1-201ENST00000407763 664 ntBASIC4.06□□□□□ -1.76
PTCHD3Q3KNS1 RNU4-78P-201ENST00000410940 126 ntBASIC4.06□□□□□ -1.76
PTCHD3Q3KNS1 RNU6-516P-201ENST00000411381 104 ntBASIC4.06□□□□□ -1.76
PTCHD3Q3KNS1 COX6B1P7-201ENST00000430845 235 ntBASIC4.06□□□□□ -1.76
PTCHD3Q3KNS1 GPR143P-201ENST00000434155 205 ntBASIC4.06□□□□□ -1.76
PTCHD3Q3KNS1 AC010655.1-201ENST00000449336 292 ntBASIC4.06□□□□□ -1.76
PTCHD3Q3KNS1 NANOGP10-201ENST00000453325 895 ntBASIC4.06□□□□□ -1.76
PTCHD3Q3KNS1 RAD23BP3-201ENST00000454157 1152 ntBASIC4.06□□□□□ -1.76
PTCHD3Q3KNS1 RPL29-203ENST00000475248 551 ntAPPRIS P1 TSL 3 BASIC4.06□□□□□ -1.76
PTCHD3Q3KNS1 AC006517.1-201ENST00000480485 328 ntBASIC4.06□□□□□ -1.76
PTCHD3Q3KNS1 AF213884.1-201ENST00000488102 463 ntBASIC4.06□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 82.2 ms