Protein–RNA interactions for Protein: Q06945

SOX4, Transcription factor SOX-4, humanhuman

Predicted RBP Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX4Q06945 PCNPP5-201ENST00000452246 481 ntBASIC5.2□□□□□ -1.58
SOX4Q06945 AL133481.3-201ENST00000456546 333 ntTSL 3 BASIC5.2□□□□□ -1.58
SOX4Q06945 AC117465.1-201ENST00000457125 522 ntTSL 3 BASIC5.2□□□□□ -1.58
SOX4Q06945 LINC01206-203ENST00000476815 482 ntTSL 3 BASIC5.2□□□□□ -1.58
SOX4Q06945 RN7SL459P-201ENST00000481078 302 ntBASIC5.2□□□□□ -1.58
SOX4Q06945 AC106892.1-201ENST00000491608 406 ntTSL 3 BASIC5.2□□□□□ -1.58
SOX4Q06945 MRPS33-209ENST00000496958 688 ntAPPRIS P1 TSL 3 BASIC5.2□□□□□ -1.58
SOX4Q06945 KRTAP5-14P-201ENST00000502328 121 ntBASIC5.2□□□□□ -1.58
SOX4Q06945 COX7A2P2-201ENST00000505291 250 ntBASIC5.2□□□□□ -1.58
SOX4Q06945 TBCAP3-201ENST00000512475 312 ntBASIC5.2□□□□□ -1.58
SOX4Q06945 SNORD116.3-201ENST00000517176 78 ntBASIC5.2□□□□□ -1.58
SOX4Q06945 AC022915.1-201ENST00000521660 289 ntTSL 3 BASIC5.2□□□□□ -1.58
SOX4Q06945 AP000827.1-201ENST00000527814 258 ntBASIC5.2□□□□□ -1.58
SOX4Q06945 AC244502.1-203ENST00000541008 576 ntTSL 4 BASIC5.2□□□□□ -1.58
SOX4Q06945 GAPLINC-202ENST00000579007 643 ntTSL 3 BASIC5.2□□□□□ -1.58
SOX4Q06945 RN7SL52P-201ENST00000584271 284 ntBASIC5.2□□□□□ -1.58
SOX4Q06945 AC234771.5-201ENST00000600161 514 ntBASIC5.2□□□□□ -1.58
SOX4Q06945 AC006363.1-201ENST00000603806 463 ntBASIC5.2□□□□□ -1.58
SOX4Q06945 AC005191.1-201ENST00000603950 358 ntBASIC5.2□□□□□ -1.58
SOX4Q06945 AC018462.2-201ENST00000605375 395 ntBASIC5.2□□□□□ -1.58
SOX4Q06945 LAMTOR5-AS1-217ENST00000608152 407 ntTSL 5 BASIC5.2□□□□□ -1.58
SOX4Q06945 AC020634.1-201ENST00000608701 549 ntBASIC5.2□□□□□ -1.58
SOX4Q06945 RN7SL722P-201ENST00000617780 284 ntBASIC5.2□□□□□ -1.58
SOX4Q06945 RN7SL565P-201ENST00000618246 284 ntBASIC5.2□□□□□ -1.58
SOX4Q06945 AC078938.1-201ENST00000620993 318 ntBASIC5.2□□□□□ -1.58
SOX4Q06945 RYR3-212ENST00000634891 15591 ntAPPRIS P3 TSL 1 (best) BASIC5.2□□□□□ -1.58
SOX4Q06945 RABL3-201ENST00000273375 3883 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
SOX4Q06945 PRTG-201ENST00000389286 11967 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
SOX4Q06945 DAZ1-205ENST00000540248 3268 ntTSL 5 BASIC5.2□□□□□ -1.58
SOX4Q06945 PTPRD-202ENST00000356435 9472 ntAPPRIS P1 TSL 5 BASIC5.2□□□□□ -1.58
SOX4Q06945 EXPH5-201ENST00000265843 10187 ntAPPRIS P3 TSL 1 (best) BASIC5.2□□□□□ -1.58
SOX4Q06945 FAM111A-201ENST00000361723 3592 ntAPPRIS P1 TSL 2 BASIC5.2□□□□□ -1.58
SOX4Q06945 DNM3OS-201ENST00000417354 4358 ntTSL 4 BASIC5.2□□□□□ -1.58
SOX4Q06945 RIMS2-205ENST00000436393 4384 ntTSL 2 BASIC5.2□□□□□ -1.58
SOX4Q06945 ELAVL2-202ENST00000380110 3691 ntTSL 5 BASIC5.19□□□□□ -1.58
SOX4Q06945 CALN1-204ENST00000405452 8571 ntTSL 2 BASIC5.19□□□□□ -1.58
SOX4Q06945 Z94721.2-201ENST00000609590 5310 ntTSL 2 BASIC5.19□□□□□ -1.58
SOX4Q06945 C1orf112-201ENST00000286031 4355 ntAPPRIS P3 TSL 1 (best) BASIC5.19□□□□□ -1.58
SOX4Q06945 AC009313.2-201ENST00000417893 1941 ntBASIC5.19□□□□□ -1.58
SOX4Q06945 MLH3-210ENST00000556257 4229 ntTSL 5 BASIC5.19□□□□□ -1.58
SOX4Q06945 RNU1-115P-201ENST00000365329 160 ntBASIC5.19□□□□□ -1.58
SOX4Q06945 Y_RNA.428-201ENST00000384078 102 ntBASIC5.19□□□□□ -1.58
SOX4Q06945 Y_RNA.512-201ENST00000384518 102 ntBASIC5.19□□□□□ -1.58
SOX4Q06945 RNU2-50P-201ENST00000410494 143 ntBASIC5.19□□□□□ -1.58
SOX4Q06945 GNG5P5-201ENST00000420444 220 ntBASIC5.19□□□□□ -1.58
SOX4Q06945 AC236972.1-201ENST00000433225 199 ntBASIC5.19□□□□□ -1.58
SOX4Q06945 RPS5P7-201ENST00000456664 608 ntBASIC5.19□□□□□ -1.58
SOX4Q06945 AC245028.2-201ENST00000458673 253 ntBASIC5.19□□□□□ -1.58
SOX4Q06945 SNORD97-201ENST00000459187 142 ntBASIC5.19□□□□□ -1.58
SOX4Q06945 snoU13.7-201ENST00000459220 104 ntBASIC5.19□□□□□ -1.58
SOX4Q06945 AC104472.2-201ENST00000469035 601 ntBASIC5.19□□□□□ -1.58
SOX4Q06945 RN7SL558P-201ENST00000497468 299 ntBASIC5.19□□□□□ -1.58
SOX4Q06945 AC091868.1-201ENST00000508746 304 ntBASIC5.19□□□□□ -1.58
SOX4Q06945 AC108078.2-201ENST00000510750 236 ntBASIC5.19□□□□□ -1.58
SOX4Q06945 AC073429.1-201ENST00000511749 503 ntTSL 3 BASIC5.19□□□□□ -1.58
SOX4Q06945 RNU6-1143P-201ENST00000516125 104 ntBASIC5.19□□□□□ -1.58
SOX4Q06945 RNU6-1092P-201ENST00000516955 87 ntBASIC5.19□□□□□ -1.58
SOX4Q06945 RNU4ATAC10P-201ENST00000516967 122 ntBASIC5.19□□□□□ -1.58
SOX4Q06945 RNU1-54P-201ENST00000517181 120 ntBASIC5.19□□□□□ -1.58
SOX4Q06945 MAL2-201ENST00000522112 573 ntTSL 4 BASIC5.19□□□□□ -1.58
SOX4Q06945 AC084880.2-201ENST00000536009 501 ntTSL 3 BASIC5.19□□□□□ -1.58
SOX4Q06945 FAM222A-AS1-202ENST00000541460 751 ntTSL 4 BASIC5.19□□□□□ -1.58
SOX4Q06945 AC133555.2-201ENST00000550213 292 ntBASIC5.19□□□□□ -1.58
SOX4Q06945 AC018552.1-201ENST00000562099 811 ntBASIC5.19□□□□□ -1.58
SOX4Q06945 AC093249.4-201ENST00000564755 259 ntBASIC5.19□□□□□ -1.58
SOX4Q06945 AC106782.4-201ENST00000568264 210 ntBASIC5.19□□□□□ -1.58
SOX4Q06945 AC087500.2-201ENST00000575056 498 ntTSL 5 BASIC5.19□□□□□ -1.58
SOX4Q06945 MIR5699-201ENST00000578903 90 ntBASIC5.19□□□□□ -1.58
SOX4Q06945 AC009271.1-202ENST00000588803 492 ntTSL 3 BASIC5.19□□□□□ -1.58
SOX4Q06945 AL121932.1-201ENST00000605542 214 ntBASIC5.19□□□□□ -1.58
SOX4Q06945 WISP3-211ENST00000639360 1026 ntTSL 5 BASIC5.19□□□□□ -1.58
SOX4Q06945 BRIP1-202ENST00000577598 3969 ntAPPRIS ALT2 TSL 5 BASIC5.19□□□□□ -1.58
SOX4Q06945 MYB-213ENST00000525369 2866 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
SOX4Q06945 SGIP1-203ENST00000371037 7768 ntAPPRIS P3 TSL 1 (best) BASIC5.19□□□□□ -1.58
SOX4Q06945 AC093775.1-201ENST00000624154 1868 ntBASIC5.19□□□□□ -1.58
SOX4Q06945 ASB14-202ENST00000487349 3179 ntAPPRIS P2 TSL 1 (best) BASIC5.19□□□□□ -1.58
SOX4Q06945 STAU2-225ENST00000523558 1603 ntTSL 2 BASIC5.19□□□□□ -1.58
SOX4Q06945 ZNF567-203ENST00000585696 3734 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
SOX4Q06945 ZEB1-202ENST00000361642 5990 ntAPPRIS ALT2 TSL 1 (best) BASIC5.19□□□□□ -1.58
SOX4Q06945 USP28-213ENST00000544967 3498 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
SOX4Q06945 OR8J2-201ENST00000641465 2883 ntAPPRIS P1 BASIC5.18□□□□□ -1.58
SOX4Q06945 RAD51AP1-202ENST00000352618 2113 ntAPPRIS P3 TSL 1 (best) BASIC5.18□□□□□ -1.58
SOX4Q06945 DICER1-212ENST00000541352 5621 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
SOX4Q06945 LIPI-201ENST00000344577 1652 ntAPPRIS P2 TSL 1 (best) BASIC5.18□□□□□ -1.58
SOX4Q06945 ZNF85-201ENST00000300540 1531 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
SOX4Q06945 AL121839.2-201ENST00000565058 6943 ntBASIC5.18□□□□□ -1.58
SOX4Q06945 LINC00550-201ENST00000629293 3434 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
SOX4Q06945 DPY19L2P2-203ENST00000435536 1858 ntBASIC5.18□□□□□ -1.58
SOX4Q06945 HYKK-206ENST00000569878 4097 ntAPPRIS P1 TSL 5 BASIC5.18□□□□□ -1.58
SOX4Q06945 SLC9B1-202ENST00000394789 1735 ntAPPRIS ALT2 TSL 1 (best) BASIC5.18□□□□□ -1.58
SOX4Q06945 HIST1H2BD-201ENST00000289316 789 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
SOX4Q06945 RNU1-130P-201ENST00000363930 160 ntBASIC5.18□□□□□ -1.58
SOX4Q06945 SNORA5.1-201ENST00000384275 131 ntBASIC5.18□□□□□ -1.58
SOX4Q06945 Y_RNA.493-201ENST00000384422 102 ntBASIC5.18□□□□□ -1.58
SOX4Q06945 AL049697.2-201ENST00000403708 294 ntBASIC5.18□□□□□ -1.58
SOX4Q06945 AL031674.1-202ENST00000413070 465 ntTSL 3 BASIC5.18□□□□□ -1.58
SOX4Q06945 AF241725.1-201ENST00000416182 480 ntTSL 3 BASIC5.18□□□□□ -1.58
SOX4Q06945 AC069213.2-201ENST00000420238 366 ntBASIC5.18□□□□□ -1.58
SOX4Q06945 AC092013.1-201ENST00000438795 332 ntBASIC5.18□□□□□ -1.58
SOX4Q06945 AC127537.2-201ENST00000439258 465 ntBASIC5.18□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 91.9 ms