Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 RNU6-1160P-201ENST00000384546 104 ntBASIC5.18□□□□□ -1.58
LIG3P49916 RNU6ATAC7P-201ENST00000408111 127 ntBASIC5.18□□□□□ -1.58
LIG3P49916 RNA5SP146-201ENST00000410743 123 ntBASIC5.18□□□□□ -1.58
LIG3P49916 AL590705.3-201ENST00000416066 474 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
LIG3P49916 MOBP-206ENST00000428261 561 ntAPPRIS ALT2 TSL 4 BASIC5.18□□□□□ -1.58
LIG3P49916 LINC01208-202ENST00000434969 827 ntTSL 2 BASIC5.18□□□□□ -1.58
LIG3P49916 AC005019.1-201ENST00000436455 431 ntBASIC5.18□□□□□ -1.58
LIG3P49916 PRPF38AP2-201ENST00000438179 851 ntBASIC5.18□□□□□ -1.58
LIG3P49916 RPL7AP61-201ENST00000443410 636 ntBASIC5.18□□□□□ -1.58
LIG3P49916 AL590399.6-201ENST00000446396 307 ntBASIC5.18□□□□□ -1.58
LIG3P49916 AC116533.1-201ENST00000459748 321 ntBASIC5.18□□□□□ -1.58
LIG3P49916 AC108161.1-201ENST00000461060 402 ntBASIC5.18□□□□□ -1.58
LIG3P49916 RN7SL610P-201ENST00000463845 291 ntBASIC5.18□□□□□ -1.58
LIG3P49916 AC010631.1-201ENST00000474150 156 ntBASIC5.18□□□□□ -1.58
LIG3P49916 MGC32805-203ENST00000506053 652 ntTSL 3 BASIC5.18□□□□□ -1.58
LIG3P49916 LIAS-206ENST00000513731 826 ntTSL 5 BASIC5.18□□□□□ -1.58
LIG3P49916 AC093689.1-201ENST00000514737 246 ntTSL 5 BASIC5.18□□□□□ -1.58
LIG3P49916 RN7SKP24-201ENST00000515888 284 ntBASIC5.18□□□□□ -1.58
LIG3P49916 RNU6ATAC24P-201ENST00000516811 135 ntBASIC5.18□□□□□ -1.58
LIG3P49916 IGHVII-44-2-201ENST00000517728 250 ntBASIC5.18□□□□□ -1.58
LIG3P49916 AP000442.2-202ENST00000531311 601 ntTSL 3 BASIC5.18□□□□□ -1.58
LIG3P49916 AC008250.1-201ENST00000539874 522 ntTSL 3 BASIC5.18□□□□□ -1.58
LIG3P49916 AC093012.1-202ENST00000549403 582 ntBASIC5.18□□□□□ -1.58
LIG3P49916 AL161713.1-201ENST00000555538 145 ntBASIC5.18□□□□□ -1.58
LIG3P49916 AC023824.4-201ENST00000562572 476 ntTSL 3 BASIC5.18□□□□□ -1.58
LIG3P49916 AC008521.1-201ENST00000587471 187 ntBASIC5.18□□□□□ -1.58
LIG3P49916 Z98949.1-211ENST00000596813 773 ntTSL 5 BASIC5.18□□□□□ -1.58
LIG3P49916 AC104662.1-201ENST00000604448 511 ntBASIC5.18□□□□□ -1.58
LIG3P49916 AC068870.2-201ENST00000620635 389 ntBASIC5.18□□□□□ -1.58
LIG3P49916 AP002799.1-201ENST00000623552 423 ntBASIC5.18□□□□□ -1.58
LIG3P49916 AC092435.4-201ENST00000623012 4159 ntBASIC5.18□□□□□ -1.58
LIG3P49916 PDE10A-201ENST00000366882 8233 ntAPPRIS P3 TSL 5 BASIC5.18□□□□□ -1.58
LIG3P49916 EIF4EBP2-201ENST00000373218 7257 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
LIG3P49916 MTCO1P12-201ENST00000414273 1543 ntBASIC5.18□□□□□ -1.58
LIG3P49916 WDR63-201ENST00000294664 2995 ntAPPRIS P3 TSL 1 (best) BASIC5.17□□□□□ -1.58
LIG3P49916 FUT9-201ENST00000302103 12783 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
LIG3P49916 STON1-GTF2A1L-201ENST00000394751 3534 ntTSL 2 BASIC5.17□□□□□ -1.58
LIG3P49916 RNMT-209ENST00000592764 4108 ntTSL 2 BASIC5.17□□□□□ -1.58
LIG3P49916 FAM184A-212ENST00000522284 2721 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
LIG3P49916 XIRP2-207ENST00000628543 12182 ntTSL 5 BASIC5.17□□□□□ -1.58
LIG3P49916 SNURFL-201ENST00000309296 343 ntBASIC5.17□□□□□ -1.58
LIG3P49916 SNORA63C-201ENST00000364578 129 ntBASIC5.17□□□□□ -1.58
LIG3P49916 RCAN3-201ENST00000374393 382 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
LIG3P49916 C2orf73-203ENST00000405749 576 ntTSL 4 BASIC5.17□□□□□ -1.58
LIG3P49916 U3.32-201ENST00000408116 212 ntBASIC5.17□□□□□ -1.58
LIG3P49916 ACTR3BP6-201ENST00000422332 1241 ntBASIC5.17□□□□□ -1.58
LIG3P49916 Z82205.1-201ENST00000428456 297 ntBASIC5.17□□□□□ -1.58
LIG3P49916 ZFY-AS1-202ENST00000431145 419 ntTSL 3 BASIC5.17□□□□□ -1.58
LIG3P49916 AL450992.2-201ENST00000434182 506 ntTSL 5 BASIC5.17□□□□□ -1.58
LIG3P49916 AL451139.1-201ENST00000434718 346 ntBASIC5.17□□□□□ -1.58
LIG3P49916 AL589765.3-201ENST00000446084 462 ntBASIC5.17□□□□□ -1.58
LIG3P49916 GAPDHP27-201ENST00000447427 1020 ntBASIC5.17□□□□□ -1.58
LIG3P49916 RPL29P29-201ENST00000448725 423 ntBASIC5.17□□□□□ -1.58
LIG3P49916 RPS15AP27-201ENST00000449183 343 ntBASIC5.17□□□□□ -1.58
LIG3P49916 FABP5P13-201ENST00000452144 328 ntBASIC5.17□□□□□ -1.58
LIG3P49916 GAS5-223ENST00000452197 483 ntTSL 3 BASIC5.17□□□□□ -1.58
LIG3P49916 LINC01077-201ENST00000452288 413 ntTSL 3 BASIC5.17□□□□□ -1.58
LIG3P49916 AC097484.1-201ENST00000471148 389 ntBASIC5.17□□□□□ -1.58
LIG3P49916 AC106872.2-201ENST00000494303 480 ntBASIC5.17□□□□□ -1.58
LIG3P49916 AC010350.1-201ENST00000504908 231 ntBASIC5.17□□□□□ -1.58
LIG3P49916 RBBP4P6-201ENST00000508098 202 ntBASIC5.17□□□□□ -1.58
LIG3P49916 AC109464.3-201ENST00000509456 204 ntTSL 5 BASIC5.17□□□□□ -1.58
LIG3P49916 HIGD1AP13-201ENST00000509878 289 ntBASIC5.17□□□□□ -1.58
LIG3P49916 RNU6-1095P-201ENST00000516148 108 ntBASIC5.17□□□□□ -1.58
LIG3P49916 Y_RNA.711-201ENST00000516993 102 ntBASIC5.17□□□□□ -1.58
LIG3P49916 RNA5SP454-201ENST00000517231 127 ntBASIC5.17□□□□□ -1.58
LIG3P49916 MS4A4E-206ENST00000528394 555 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
LIG3P49916 AC107918.3-201ENST00000533272 382 ntBASIC5.17□□□□□ -1.58
LIG3P49916 APOOP3-201ENST00000536787 586 ntBASIC5.17□□□□□ -1.58
LIG3P49916 AC011611.2-201ENST00000549888 358 ntTSL 3 BASIC5.17□□□□□ -1.58
LIG3P49916 AL121576.1-201ENST00000556055 276 ntBASIC5.17□□□□□ -1.58
LIG3P49916 ZNF230-204ENST00000585632 579 ntTSL 2 BASIC5.17□□□□□ -1.58
LIG3P49916 AC020910.1-201ENST00000599404 413 ntTSL 5 BASIC5.17□□□□□ -1.58
LIG3P49916 AL138889.2-201ENST00000603883 242 ntBASIC5.17□□□□□ -1.58
LIG3P49916 CYP2C61P-201ENST00000604072 290 ntBASIC5.17□□□□□ -1.58
LIG3P49916 AC012409.4-201ENST00000612923 249 ntBASIC5.17□□□□□ -1.58
LIG3P49916 AC244093.3-201ENST00000615419 411 ntTSL 3 BASIC5.17□□□□□ -1.58
LIG3P49916 AC090510.2-201ENST00000617465 629 ntBASIC5.17□□□□□ -1.58
LIG3P49916 AC118658.2-201ENST00000618697 459 ntBASIC5.17□□□□□ -1.58
LIG3P49916 AC103705.1-201ENST00000619013 241 ntBASIC5.17□□□□□ -1.58
LIG3P49916 AL445363.3-201ENST00000623080 671 ntBASIC5.17□□□□□ -1.58
LIG3P49916 AC243312.2-201ENST00000623340 601 ntBASIC5.17□□□□□ -1.58
LIG3P49916 OR52H1-202ENST00000641796 1061 ntBASIC5.17□□□□□ -1.58
LIG3P49916 TRIQK-211ENST00000520430 1829 ntAPPRIS P1 TSL 2 BASIC5.17□□□□□ -1.58
LIG3P49916 HDAC9-204ENST00000406451 9705 ntAPPRIS ALT1 TSL 1 (best) BASIC5.17□□□□□ -1.58
LIG3P49916 SCN1A-202ENST00000375405 8097 ntAPPRIS P3 TSL 5 BASIC5.17□□□□□ -1.58
LIG3P49916 LRRC39-201ENST00000342895 1881 ntAPPRIS P1 TSL 5 BASIC5.17□□□□□ -1.58
LIG3P49916 PPP1R9A-201ENST00000289495 3983 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
LIG3P49916 OR2T7-202ENST00000641557 3409 ntAPPRIS P1 BASIC5.17□□□□□ -1.58
LIG3P49916 EDIL3-202ENST00000380138 4244 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
LIG3P49916 LINC01630-206ENST00000635103 4292 ntTSL 5 BASIC5.17□□□□□ -1.58
LIG3P49916 OR5AU1-203ENST00000641697 7755 ntAPPRIS P1 BASIC5.17□□□□□ -1.58
LIG3P49916 PREPL-205ENST00000409411 4725 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
LIG3P49916 ATXN3L-201ENST00000380622 2164 ntAPPRIS P1 BASIC5.16□□□□□ -1.58
LIG3P49916 C1orf141-208ENST00000621590 4179 ntAPPRIS ALT2 TSL 5 BASIC5.16□□□□□ -1.58
LIG3P49916 GPR34-201ENST00000378138 1815 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
LIG3P49916 MAPK10-235ENST00000638225 8941 ntAPPRIS P2 TSL 1 (best) BASIC5.16□□□□□ -1.58
LIG3P49916 CLCA1-201ENST00000234701 3310 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
LIG3P49916 PUS7L-203ENST00000431332 1873 ntTSL 2 BASIC5.16□□□□□ -1.58
LIG3P49916 CASC19-201ENST00000500112 5735 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 116.6 ms