Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 AL391097.2-201ENST00000435057 485 ntTSL 3 BASIC5.05□□□□□ -1.6
COL8A1P27658 AL157937.1-201ENST00000435092 443 ntTSL 3 BASIC5.05□□□□□ -1.6
COL8A1P27658 RPS17P13-201ENST00000448974 407 ntBASIC5.05□□□□□ -1.6
COL8A1P27658 AL353691.1-201ENST00000451332 387 ntBASIC5.05□□□□□ -1.6
COL8A1P27658 AL136126.1-201ENST00000473603 402 ntBASIC5.05□□□□□ -1.6
COL8A1P27658 RN7SL459P-201ENST00000481078 302 ntBASIC5.05□□□□□ -1.6
COL8A1P27658 LINC02046-202ENST00000481334 390 ntTSL 3 BASIC5.05□□□□□ -1.6
COL8A1P27658 AC009120.1-201ENST00000493458 473 ntBASIC5.05□□□□□ -1.6
COL8A1P27658 AC135721.1-201ENST00000497954 479 ntBASIC5.05□□□□□ -1.6
COL8A1P27658 AC113155.1-201ENST00000511141 769 ntBASIC5.05□□□□□ -1.6
COL8A1P27658 LINC01217-201ENST00000514427 562 ntTSL 4 BASIC5.05□□□□□ -1.6
COL8A1P27658 RNU6-1333P-201ENST00000516162 93 ntBASIC5.05□□□□□ -1.6
COL8A1P27658 AC090568.2-205ENST00000518631 576 ntTSL 4 BASIC5.05□□□□□ -1.6
COL8A1P27658 AC107958.3-201ENST00000553410 431 ntTSL 3 BASIC5.05□□□□□ -1.6
COL8A1P27658 AC138907.7-201ENST00000568972 358 ntTSL 5 BASIC5.05□□□□□ -1.6
COL8A1P27658 MIR5696-201ENST00000578474 85 ntBASIC5.05□□□□□ -1.6
COL8A1P27658 AC107926.1-201ENST00000581673 621 ntTSL 3 BASIC5.05□□□□□ -1.6
COL8A1P27658 LINC01835-202ENST00000589345 450 ntTSL 3 BASIC5.05□□□□□ -1.6
COL8A1P27658 SOX9-AS1-216ENST00000602213 821 ntTSL 5 BASIC5.05□□□□□ -1.6
COL8A1P27658 AC174048.1-201ENST00000603389 144 ntBASIC5.05□□□□□ -1.6
COL8A1P27658 AC007566.2-201ENST00000603642 413 ntBASIC5.05□□□□□ -1.6
COL8A1P27658 MIR3976-201ENST00000606807 139 ntBASIC5.05□□□□□ -1.6
COL8A1P27658 Metazoa_SRP.43-201ENST00000616394 271 ntBASIC5.05□□□□□ -1.6
COL8A1P27658 AC007998.5-201ENST00000622938 237 ntBASIC5.05□□□□□ -1.6
COL8A1P27658 LINC01002-236ENST00000634022 378 ntTSL 5 BASIC5.05□□□□□ -1.6
COL8A1P27658 GYPB-216ENST00000638448 363 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
COL8A1P27658 ZNF81-202ENST00000338637 7859 ntAPPRIS P1 TSL 3 BASIC5.05□□□□□ -1.6
COL8A1P27658 ANKS1B-216ENST00000549558 2268 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
COL8A1P27658 AASDH-203ENST00000502617 3004 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
COL8A1P27658 MECOM-217ENST00000494292 3939 ntAPPRIS ALT2 TSL 5 BASIC5.05□□□□□ -1.6
COL8A1P27658 RABGAP1L-208ENST00000392064 6282 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
COL8A1P27658 NXF3-201ENST00000395065 1938 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
COL8A1P27658 AC018809.2-201ENST00000602436 3823 ntBASIC5.05□□□□□ -1.6
COL8A1P27658 AL606537.1-201ENST00000607258 2011 ntBASIC5.04□□□□□ -1.6
COL8A1P27658 RYR3-201ENST00000389232 15552 ntAPPRIS ALT2 TSL 5 BASIC5.04□□□□□ -1.6
COL8A1P27658 AC093849.1-201ENST00000563631 2209 ntBASIC5.04□□□□□ -1.6
COL8A1P27658 PPFIA2-203ENST00000443686 3782 ntTSL 2 BASIC5.04□□□□□ -1.6
COL8A1P27658 IL1RAP-205ENST00000412504 4875 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
COL8A1P27658 PCGF5-205ENST00000614189 7037 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
COL8A1P27658 MUC17-201ENST00000306151 14247 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
COL8A1P27658 PLEKHA1-201ENST00000368988 3872 ntTSL 5 BASIC5.04□□□□□ -1.6
COL8A1P27658 WFDC9-201ENST00000326000 659 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
COL8A1P27658 RNA5SP305-201ENST00000362665 119 ntBASIC5.04□□□□□ -1.6
COL8A1P27658 Y_RNA.82-201ENST00000363000 102 ntBASIC5.04□□□□□ -1.6
COL8A1P27658 Y_RNA.92-201ENST00000363043 102 ntBASIC5.04□□□□□ -1.6
COL8A1P27658 Y_RNA.235-201ENST00000364412 102 ntBASIC5.04□□□□□ -1.6
COL8A1P27658 Y_RNA.306-201ENST00000365015 102 ntBASIC5.04□□□□□ -1.6
COL8A1P27658 Y_RNA.312-201ENST00000365089 102 ntBASIC5.04□□□□□ -1.6
COL8A1P27658 Y_RNA.322-201ENST00000365151 102 ntBASIC5.04□□□□□ -1.6
COL8A1P27658 IGLV5-48-201ENST00000390293 369 ntAPPRIS P1 BASIC5.04□□□□□ -1.6
COL8A1P27658 RPL21P75-201ENST00000396599 483 ntBASIC5.04□□□□□ -1.6
COL8A1P27658 RPL21P28-201ENST00000401418 483 ntBASIC5.04□□□□□ -1.6
COL8A1P27658 RNU6-516P-201ENST00000411381 104 ntBASIC5.04□□□□□ -1.6
COL8A1P27658 AC116036.1-201ENST00000412199 367 ntBASIC5.04□□□□□ -1.6
COL8A1P27658 AC017078.1-201ENST00000416146 368 ntBASIC5.04□□□□□ -1.6
COL8A1P27658 DPPA2P2-201ENST00000418220 897 ntBASIC5.04□□□□□ -1.6
COL8A1P27658 AC078960.1-201ENST00000422160 177 ntTSL 5 BASIC5.04□□□□□ -1.6
COL8A1P27658 AL590556.1-201ENST00000423231 483 ntBASIC5.04□□□□□ -1.6
COL8A1P27658 LINC02264-201ENST00000442020 576 ntTSL 3 BASIC5.04□□□□□ -1.6
COL8A1P27658 RBMY2TP-201ENST00000451162 947 ntBASIC5.04□□□□□ -1.6
COL8A1P27658 Y_RNA.650-201ENST00000459002 102 ntBASIC5.04□□□□□ -1.6
COL8A1P27658 AC104164.1-201ENST00000460282 590 ntBASIC5.04□□□□□ -1.6
COL8A1P27658 RPL21P11-201ENST00000461458 483 ntBASIC5.04□□□□□ -1.6
COL8A1P27658 RPL21P39-201ENST00000463605 483 ntBASIC5.04□□□□□ -1.6
COL8A1P27658 AC022034.3-201ENST00000471393 478 ntBASIC5.04□□□□□ -1.6
COL8A1P27658 AC132942.1-201ENST00000486753 483 ntBASIC5.04□□□□□ -1.6
COL8A1P27658 AC010409.1-201ENST00000487382 476 ntBASIC5.04□□□□□ -1.6
COL8A1P27658 AC093591.1-201ENST00000491435 481 ntBASIC5.04□□□□□ -1.6
COL8A1P27658 RPL21P16-201ENST00000495531 483 ntBASIC5.04□□□□□ -1.6
COL8A1P27658 CYCTP-201ENST00000504253 315 ntBASIC5.04□□□□□ -1.6
COL8A1P27658 AC109927.1-202ENST00000511951 282 ntTSL 3 BASIC5.04□□□□□ -1.6
COL8A1P27658 OR7H2P-201ENST00000513483 306 ntBASIC5.04□□□□□ -1.6
COL8A1P27658 RNU6-426P-201ENST00000516464 97 ntBASIC5.04□□□□□ -1.6
COL8A1P27658 Y_RNA.777-201ENST00000516982 102 ntBASIC5.04□□□□□ -1.6
COL8A1P27658 AC103796.1-201ENST00000530663 358 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
COL8A1P27658 AC010177.1-201ENST00000547819 366 ntTSL 3 BASIC5.04□□□□□ -1.6
COL8A1P27658 H3F3AP1-201ENST00000559984 334 ntBASIC5.04□□□□□ -1.6
COL8A1P27658 TXNP4-201ENST00000575018 310 ntBASIC5.04□□□□□ -1.6
COL8A1P27658 AC022809.1-201ENST00000579247 428 ntTSL 3 BASIC5.04□□□□□ -1.6
COL8A1P27658 MIR4433B-201ENST00000581329 102 ntBASIC5.04□□□□□ -1.6
COL8A1P27658 OR1M4P-201ENST00000589199 287 ntBASIC5.04□□□□□ -1.6
COL8A1P27658 SRD5A3-AS1-204ENST00000592823 542 ntTSL 5 BASIC5.04□□□□□ -1.6
COL8A1P27658 Y_RNA.771-201ENST00000598668 102 ntBASIC5.04□□□□□ -1.6
COL8A1P27658 AC006254.2-201ENST00000603259 279 ntBASIC5.04□□□□□ -1.6
COL8A1P27658 AL352984.2-202ENST00000613699 155 ntBASIC5.04□□□□□ -1.6
COL8A1P27658 AL161637.1-201ENST00000622380 412 ntBASIC5.04□□□□□ -1.6
COL8A1P27658 Y_RNA.789-201ENST00000622480 102 ntBASIC5.04□□□□□ -1.6
COL8A1P27658 KIAA1328-201ENST00000280020 4853 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
COL8A1P27658 KIF27-202ENST00000334204 4400 ntAPPRIS ALT2 TSL 1 (best) BASIC5.04□□□□□ -1.6
COL8A1P27658 PDE4B-203ENST00000371045 3982 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
COL8A1P27658 FSCB-201ENST00000340446 2938 ntAPPRIS P1 BASIC5.04□□□□□ -1.6
COL8A1P27658 ESRRG-224ENST00000616180 5194 ntAPPRIS P1 TSL 5 BASIC5.04□□□□□ -1.6
COL8A1P27658 MCMDC2-204ENST00000422365 5096 ntAPPRIS P1 TSL 2 BASIC5.04□□□□□ -1.6
COL8A1P27658 FNIP1-202ENST00000307968 6388 ntAPPRIS ALT2 TSL 5 BASIC5.04□□□□□ -1.6
COL8A1P27658 PROM1-201ENST00000447510 3977 ntAPPRIS P3 TSL 1 (best) BASIC5.04□□□□□ -1.6
COL8A1P27658 RPL23AP82-206ENST00000480246 2987 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
COL8A1P27658 ERVH48-1-201ENST00000447535 2790 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
COL8A1P27658 KIN-201ENST00000379562 6348 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
COL8A1P27658 ECT2L-201ENST00000367682 4343 ntAPPRIS P1 TSL 5 BASIC5.04□□□□□ -1.6
COL8A1P27658 SOX5-216ENST00000546136 6975 ntAPPRIS P3 TSL 5 BASIC5.03□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 83 ms