Protein–RNA interactions for Protein: O15551

CLDN3, Claudin-3, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN3O15551 GCNT4-201ENST00000322348 5554 ntAPPRIS P1 BASIC3.18□□□□□ -1.9
CLDN3O15551 AGTR1-206ENST00000474935 1795 ntAPPRIS P1 TSL 3 BASIC3.17□□□□□ -1.9
CLDN3O15551 AC092435.3-201ENST00000565538 3654 ntBASIC3.17□□□□□ -1.9
CLDN3O15551 AC009487.2-201ENST00000420969 6821 ntBASIC3.17□□□□□ -1.9
CLDN3O15551 YWHAZ-219ENST00000522542 1394 ntTSL 2 BASIC3.17□□□□□ -1.9
CLDN3O15551 EXOC6-203ENST00000371552 3564 ntTSL 5 BASIC3.17□□□□□ -1.9
CLDN3O15551 RNU6-1122P-201ENST00000384449 107 ntBASIC3.17□□□□□ -1.9
CLDN3O15551 SNORA1.3-201ENST00000384676 136 ntBASIC3.17□□□□□ -1.9
CLDN3O15551 RPS20P5-201ENST00000434808 360 ntBASIC3.17□□□□□ -1.9
CLDN3O15551 AC009969.1-201ENST00000438726 172 ntBASIC3.17□□□□□ -1.9
CLDN3O15551 THAP5P1-201ENST00000439089 262 ntBASIC3.17□□□□□ -1.9
CLDN3O15551 AC020743.3-201ENST00000440351 360 ntTSL 3 BASIC3.17□□□□□ -1.9
CLDN3O15551 AL353691.1-201ENST00000451332 387 ntBASIC3.17□□□□□ -1.9
CLDN3O15551 RPL21P41-201ENST00000459863 264 ntBASIC3.17□□□□□ -1.9
CLDN3O15551 AC104164.3-201ENST00000467363 1258 ntBASIC3.17□□□□□ -1.9
CLDN3O15551 AC022861.1-201ENST00000522981 663 ntBASIC3.17□□□□□ -1.9
CLDN3O15551 AP003181.1-201ENST00000528811 445 ntTSL 3 BASIC3.17□□□□□ -1.9
CLDN3O15551 AC008083.3-201ENST00000547777 329 ntTSL 3 BASIC3.17□□□□□ -1.9
CLDN3O15551 LINC01899-203ENST00000584810 337 ntTSL 2 BASIC3.17□□□□□ -1.9
CLDN3O15551 AC011471.1-201ENST00000585766 187 ntBASIC3.17□□□□□ -1.9
CLDN3O15551 AC096947.1-201ENST00000603233 470 ntBASIC3.17□□□□□ -1.9
CLDN3O15551 BNIP3P31-201ENST00000604515 566 ntBASIC3.17□□□□□ -1.9
CLDN3O15551 AC004832.5-201ENST00000608677 401 ntBASIC3.17□□□□□ -1.9
CLDN3O15551 AC243773.3-201ENST00000613270 256 ntBASIC3.17□□□□□ -1.9
CLDN3O15551 AC025588.4-201ENST00000615802 908 ntBASIC3.17□□□□□ -1.9
CLDN3O15551 AL137790.1-201ENST00000634283 177 ntBASIC3.17□□□□□ -1.9
CLDN3O15551 NEDD4-208ENST00000508342 7235 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
CLDN3O15551 OXR1-205ENST00000442977 2956 ntTSL 2 BASIC3.17□□□□□ -1.9
CLDN3O15551 AC008264.2-201ENST00000610193 3731 ntBASIC3.17□□□□□ -1.9
CLDN3O15551 AC109315.1-201ENST00000584143 1347 ntBASIC3.17□□□□□ -1.9
CLDN3O15551 AC096644.4-201ENST00000563417 2912 ntBASIC3.16□□□□□ -1.9
CLDN3O15551 ATF2-204ENST00000409437 3697 ntTSL 5 BASIC3.16□□□□□ -1.9
CLDN3O15551 HERC5-203ENST00000508159 2243 ntTSL 2 BASIC3.16□□□□□ -1.9
CLDN3O15551 ATP2B1-201ENST00000261173 6777 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
CLDN3O15551 SNORA14A-201ENST00000364773 135 ntBASIC3.16□□□□□ -1.9
CLDN3O15551 RNU6-1257P-201ENST00000384625 110 ntBASIC3.16□□□□□ -1.9
CLDN3O15551 RNU6-1000P-201ENST00000391066 106 ntBASIC3.16□□□□□ -1.9
CLDN3O15551 RPL27AP8-201ENST00000424277 446 ntBASIC3.16□□□□□ -1.9
CLDN3O15551 GTF2IP3-201ENST00000433887 494 ntBASIC3.16□□□□□ -1.9
CLDN3O15551 AC244505.4-201ENST00000434905 287 ntBASIC3.16□□□□□ -1.9
CLDN3O15551 ACBD3-AS1-201ENST00000440540 535 ntTSL 5 BASIC3.16□□□□□ -1.9
CLDN3O15551 SSXP5-201ENST00000443473 287 ntBASIC3.16□□□□□ -1.9
CLDN3O15551 LINC01683-201ENST00000443479 412 ntTSL 3 BASIC3.16□□□□□ -1.9
CLDN3O15551 DIAPH2-AS1-202ENST00000445414 606 ntTSL 2 BASIC3.16□□□□□ -1.9
CLDN3O15551 AC018643.1-201ENST00000445459 414 ntTSL 5 BASIC3.16□□□□□ -1.9
CLDN3O15551 AL592447.1-201ENST00000447592 540 ntBASIC3.16□□□□□ -1.9
CLDN3O15551 RPL37P4-201ENST00000448908 268 ntBASIC3.16□□□□□ -1.9
CLDN3O15551 AC093392.2-201ENST00000450682 337 ntBASIC3.16□□□□□ -1.9
CLDN3O15551 AL031183.1-201ENST00000457667 207 ntBASIC3.16□□□□□ -1.9
CLDN3O15551 RC3H2-207ENST00000471874 749 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
CLDN3O15551 AP004217.1-201ENST00000480579 346 ntBASIC3.16□□□□□ -1.9
CLDN3O15551 AC114322.1-201ENST00000506771 926 ntBASIC3.16□□□□□ -1.9
CLDN3O15551 AC111000.2-201ENST00000507775 550 ntBASIC3.16□□□□□ -1.9
CLDN3O15551 HMGB1P28-201ENST00000507778 552 ntBASIC3.16□□□□□ -1.9
CLDN3O15551 NDST1-AS1-201ENST00000519040 368 ntTSL 2 BASIC3.16□□□□□ -1.9
CLDN3O15551 AP003102.1-201ENST00000525638 661 ntBASIC3.16□□□□□ -1.9
CLDN3O15551 AC022509.2-201ENST00000540392 699 ntTSL 3 BASIC3.16□□□□□ -1.9
CLDN3O15551 TRAV37-201ENST00000553906 342 ntBASIC3.16□□□□□ -1.9
CLDN3O15551 HIGD1AP17-201ENST00000554576 276 ntBASIC3.16□□□□□ -1.9
CLDN3O15551 AC034105.3-201ENST00000565294 442 ntBASIC3.16□□□□□ -1.9
CLDN3O15551 AC024257.5-201ENST00000612739 531 ntBASIC3.16□□□□□ -1.9
CLDN3O15551 AC074099.1-201ENST00000634100 679 ntTSL 5 BASIC3.16□□□□□ -1.9
CLDN3O15551 AC009812.4-201ENST00000569134 1805 ntBASIC3.16□□□□□ -1.9
CLDN3O15551 ASPN-201ENST00000375543 2237 ntTSL 2 BASIC3.16□□□□□ -1.9
CLDN3O15551 SLC30A6-202ENST00000357055 4758 ntTSL 2 BASIC3.16□□□□□ -1.9
CLDN3O15551 PIK3C2G-202ENST00000433979 4840 ntAPPRIS P1 TSL 5 BASIC3.16□□□□□ -1.9
CLDN3O15551 AGTR1-208ENST00000475347 1669 ntAPPRIS P1 TSL 3 BASIC3.15□□□□□ -1.9
CLDN3O15551 CD24P4-201ENST00000382840 243 ntBASIC3.15□□□□□ -1.91
CLDN3O15551 DHFRP6-201ENST00000401776 268 ntBASIC3.15□□□□□ -1.91
CLDN3O15551 Z75741.2-201ENST00000417272 1167 ntBASIC3.15□□□□□ -1.91
CLDN3O15551 AL449283.1-202ENST00000418249 604 ntBASIC3.15□□□□□ -1.91
CLDN3O15551 COTL1P1-201ENST00000422309 375 ntBASIC3.15□□□□□ -1.91
CLDN3O15551 AL590783.1-201ENST00000424138 456 ntTSL 2 BASIC3.15□□□□□ -1.91
CLDN3O15551 AL080248.1-201ENST00000428954 388 ntTSL 3 BASIC3.15□□□□□ -1.91
CLDN3O15551 AC106053.1-201ENST00000431697 368 ntTSL 3 BASIC3.15□□□□□ -1.91
CLDN3O15551 ZMYM4-AS1-201ENST00000432683 459 ntTSL 2 BASIC3.15□□□□□ -1.91
CLDN3O15551 LINC01052-201ENST00000437777 496 ntTSL 3 BASIC3.15□□□□□ -1.91
CLDN3O15551 TMEM212-IT1-201ENST00000456146 470 ntTSL 3 BASIC3.15□□□□□ -1.91
CLDN3O15551 AC121764.2-201ENST00000469806 587 ntTSL 2 BASIC3.15□□□□□ -1.91
CLDN3O15551 AL359273.1-203ENST00000506295 602 ntTSL 1 (best) BASIC3.15□□□□□ -1.91
CLDN3O15551 AC113420.1-201ENST00000507903 571 ntBASIC3.15□□□□□ -1.91
CLDN3O15551 AL359273.1-201ENST00000510918 627 ntBASIC3.15□□□□□ -1.91
CLDN3O15551 GMPSP1-201ENST00000514075 579 ntBASIC3.15□□□□□ -1.91
CLDN3O15551 RNU6-276P-201ENST00000516114 96 ntBASIC3.15□□□□□ -1.91
CLDN3O15551 SNORA19.3-201ENST00000516165 130 ntBASIC3.15□□□□□ -1.91
CLDN3O15551 RN7SKP31-201ENST00000516354 278 ntBASIC3.15□□□□□ -1.91
CLDN3O15551 HSPA8P13-201ENST00000523715 472 ntBASIC3.15□□□□□ -1.91
CLDN3O15551 AC013509.1-201ENST00000524269 339 ntTSL 3 BASIC3.15□□□□□ -1.91
CLDN3O15551 LINC02300-201ENST00000549742 665 ntTSL 4 BASIC3.15□□□□□ -1.91
CLDN3O15551 LARP7P3-201ENST00000579888 337 ntBASIC3.15□□□□□ -1.91
CLDN3O15551 AL022067.1-201ENST00000602426 454 ntBASIC3.15□□□□□ -1.91
CLDN3O15551 AL606834.3-201ENST00000602615 496 ntBASIC3.15□□□□□ -1.91
CLDN3O15551 AC004853.1-201ENST00000604902 698 ntBASIC3.15□□□□□ -1.91
CLDN3O15551 AC024060.1-201ENST00000607052 494 ntBASIC3.15□□□□□ -1.91
CLDN3O15551 AC123767.1-202ENST00000620407 817 ntBASIC3.15□□□□□ -1.91
CLDN3O15551 OR1S1-201ENST00000624470 978 ntBASIC3.15□□□□□ -1.91
CLDN3O15551 AC009039.2-201ENST00000624524 529 ntBASIC3.15□□□□□ -1.91
CLDN3O15551 ZNF639-206ENST00000484866 1730 ntAPPRIS P1 TSL 2 BASIC3.15□□□□□ -1.91
CLDN3O15551 RNF128-202ENST00000324342 2654 ntTSL 1 (best) BASIC3.15□□□□□ -1.91
CLDN3O15551 NBPF20-202ENST00000392971 18450 ntAPPRIS P2 TSL 5 BASIC3.14□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 112 ms