Protein–RNA interactions for Protein: Q9Y4P1

ATG4B, Cysteine protease ATG4B, humanhuman

Predictions only

Length 393 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4BQ9Y4P1 AL953862.1-201ENST00000423016 168 ntBASIC3.13□□□□□ -1.91
ATG4BQ9Y4P1 LINC02238-201ENST00000424953 557 ntTSL 5 BASIC3.13□□□□□ -1.91
ATG4BQ9Y4P1 MTCYBP45-201ENST00000435243 565 ntBASIC3.13□□□□□ -1.91
ATG4BQ9Y4P1 LINC01052-201ENST00000437777 496 ntTSL 3 BASIC3.13□□□□□ -1.91
ATG4BQ9Y4P1 RABEPKP1-201ENST00000440529 1026 ntBASIC3.13□□□□□ -1.91
ATG4BQ9Y4P1 ATP5C1P1-201ENST00000441945 895 ntBASIC3.13□□□□□ -1.91
ATG4BQ9Y4P1 AC093422.2-201ENST00000452599 686 ntTSL 2 BASIC3.13□□□□□ -1.91
ATG4BQ9Y4P1 AC006539.3-201ENST00000454258 129 ntBASIC3.13□□□□□ -1.91
ATG4BQ9Y4P1 RPS23P3-201ENST00000470993 430 ntBASIC3.13□□□□□ -1.91
ATG4BQ9Y4P1 RN7SL601P-201ENST00000471221 293 ntBASIC3.13□□□□□ -1.91
ATG4BQ9Y4P1 AC017015.1-201ENST00000477387 286 ntBASIC3.13□□□□□ -1.91
ATG4BQ9Y4P1 AC012181.1-201ENST00000479895 423 ntBASIC3.13□□□□□ -1.91
ATG4BQ9Y4P1 RPL32P34-201ENST00000486380 400 ntBASIC3.13□□□□□ -1.91
ATG4BQ9Y4P1 AC021678.1-201ENST00000505195 936 ntBASIC3.13□□□□□ -1.91
ATG4BQ9Y4P1 APOOP4-201ENST00000513530 597 ntBASIC3.13□□□□□ -1.91
ATG4BQ9Y4P1 XIRP2-AS1-201ENST00000525330 776 ntTSL 3 BASIC3.13□□□□□ -1.91
ATG4BQ9Y4P1 AC087362.1-201ENST00000527912 434 ntTSL 5 BASIC3.13□□□□□ -1.91
ATG4BQ9Y4P1 MS4A13-204ENST00000527948 790 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
ATG4BQ9Y4P1 AC022509.2-201ENST00000540392 699 ntTSL 3 BASIC3.13□□□□□ -1.91
ATG4BQ9Y4P1 AL355097.1-201ENST00000555889 539 ntTSL 4 BASIC3.13□□□□□ -1.91
ATG4BQ9Y4P1 AC020891.3-201ENST00000560011 363 ntTSL 3 BASIC3.13□□□□□ -1.91
ATG4BQ9Y4P1 AC087465.1-201ENST00000560574 245 ntBASIC3.13□□□□□ -1.91
ATG4BQ9Y4P1 AC009097.3-201ENST00000563557 1018 ntBASIC3.13□□□□□ -1.91
ATG4BQ9Y4P1 AC099793.1-201ENST00000567538 285 ntTSL 3 BASIC3.13□□□□□ -1.91
ATG4BQ9Y4P1 AP005901.2-201ENST00000581690 525 ntTSL 3 BASIC3.13□□□□□ -1.91
ATG4BQ9Y4P1 AC022022.2-201ENST00000602989 360 ntBASIC3.13□□□□□ -1.91
ATG4BQ9Y4P1 AL109653.1-201ENST00000603091 248 ntBASIC3.13□□□□□ -1.91
ATG4BQ9Y4P1 AL355816.2-201ENST00000610049 647 ntBASIC3.13□□□□□ -1.91
ATG4BQ9Y4P1 uc_338.1-201ENST00000612113 180 ntBASIC3.13□□□□□ -1.91
ATG4BQ9Y4P1 DLEU1_1.1-201ENST00000618107 190 ntBASIC3.13□□□□□ -1.91
ATG4BQ9Y4P1 TTN-AS1-267ENST00000628826 662 ntTSL 5 BASIC3.13□□□□□ -1.91
ATG4BQ9Y4P1 ABBA01000935.2-201ENST00000637477 838 ntBASIC3.13□□□□□ -1.91
ATG4BQ9Y4P1 AC007496.3-201ENST00000624987 3443 ntBASIC3.13□□□□□ -1.91
ATG4BQ9Y4P1 PHF6-201ENST00000332070 4759 ntAPPRIS P2 TSL 1 (best) BASIC3.13□□□□□ -1.91
ATG4BQ9Y4P1 NBPF20-201ENST00000369373 18760 ntAPPRIS ALT2 TSL 5 BASIC3.12□□□□□ -1.91
ATG4BQ9Y4P1 LINC00890-202ENST00000569275 4595 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
ATG4BQ9Y4P1 DOPEY1-203ENST00000369739 7743 ntAPPRIS ALT1 TSL 1 (best) BASIC3.12□□□□□ -1.91
ATG4BQ9Y4P1 CNGA1-203ENST00000420489 2746 ntAPPRIS P3 TSL 2 BASIC3.12□□□□□ -1.91
ATG4BQ9Y4P1 OR13C4-201ENST00000277216 957 ntAPPRIS P1 BASIC3.12□□□□□ -1.91
ATG4BQ9Y4P1 SNORA4.1-201ENST00000364263 144 ntBASIC3.12□□□□□ -1.91
ATG4BQ9Y4P1 RNU6-359P-201ENST00000365466 108 ntBASIC3.12□□□□□ -1.91
ATG4BQ9Y4P1 RNU6-952P-201ENST00000391164 108 ntBASIC3.12□□□□□ -1.91
ATG4BQ9Y4P1 HMGN1P24-201ENST00000412282 298 ntBASIC3.12□□□□□ -1.91
ATG4BQ9Y4P1 LANCL1-AS1-201ENST00000416344 714 ntTSL 3 BASIC3.12□□□□□ -1.91
ATG4BQ9Y4P1 CCDC58P2-201ENST00000417131 366 ntBASIC3.12□□□□□ -1.91
ATG4BQ9Y4P1 AP000550.2-201ENST00000417463 774 ntTSL 5 BASIC3.12□□□□□ -1.91
ATG4BQ9Y4P1 XKRYP1-201ENST00000423438 492 ntBASIC3.12□□□□□ -1.91
ATG4BQ9Y4P1 AC233728.2-201ENST00000425348 757 ntBASIC3.12□□□□□ -1.91
ATG4BQ9Y4P1 AC245052.1-201ENST00000426213 410 ntTSL 3 BASIC3.12□□□□□ -1.91
ATG4BQ9Y4P1 XKRYP2-201ENST00000432915 492 ntBASIC3.12□□□□□ -1.91
ATG4BQ9Y4P1 AL138900.2-201ENST00000434098 156 ntTSL 3 BASIC3.12□□□□□ -1.91
ATG4BQ9Y4P1 AP000552.3-201ENST00000434730 775 ntTSL 5 BASIC3.12□□□□□ -1.91
ATG4BQ9Y4P1 LINC00353-201ENST00000435401 685 ntTSL 5 BASIC3.12□□□□□ -1.91
ATG4BQ9Y4P1 HMGB3P11-201ENST00000440127 604 ntBASIC3.12□□□□□ -1.91
ATG4BQ9Y4P1 AL035701.1-201ENST00000444038 462 ntTSL 3 BASIC3.12□□□□□ -1.91
ATG4BQ9Y4P1 AC005008.2-202ENST00000447776 439 ntTSL 3 BASIC3.12□□□□□ -1.91
ATG4BQ9Y4P1 AC104978.1-201ENST00000449387 391 ntBASIC3.12□□□□□ -1.91
ATG4BQ9Y4P1 ANKRD26P4-201ENST00000455755 950 ntBASIC3.12□□□□□ -1.91
ATG4BQ9Y4P1 MEMO1P3-201ENST00000459811 302 ntBASIC3.12□□□□□ -1.91
ATG4BQ9Y4P1 RPL31P50-201ENST00000471002 296 ntBASIC3.12□□□□□ -1.91
ATG4BQ9Y4P1 TXNP6-201ENST00000510190 310 ntBASIC3.12□□□□□ -1.91
ATG4BQ9Y4P1 RNU4ATAC3P-201ENST00000516699 126 ntBASIC3.12□□□□□ -1.91
ATG4BQ9Y4P1 EEF1A1P37-201ENST00000522748 715 ntBASIC3.12□□□□□ -1.91
ATG4BQ9Y4P1 AC084819.1-201ENST00000537293 424 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
ATG4BQ9Y4P1 AC023824.4-201ENST00000562572 476 ntTSL 3 BASIC3.12□□□□□ -1.91
ATG4BQ9Y4P1 AC233702.6-201ENST00000584594 396 ntTSL 3 BASIC3.12□□□□□ -1.91
ATG4BQ9Y4P1 AC002546.2-201ENST00000585537 584 ntTSL 3 BASIC3.12□□□□□ -1.91
ATG4BQ9Y4P1 AL353997.4-201ENST00000586196 166 ntBASIC3.12□□□□□ -1.91
ATG4BQ9Y4P1 SOX2-OT-224ENST00000595313 716 ntTSL 5 BASIC3.12□□□□□ -1.91
ATG4BQ9Y4P1 AL031985.2-201ENST00000600955 480 ntBASIC3.12□□□□□ -1.91
ATG4BQ9Y4P1 AL031281.1-201ENST00000604049 488 ntBASIC3.12□□□□□ -1.91
ATG4BQ9Y4P1 AL592221.1-201ENST00000605266 382 ntBASIC3.12□□□□□ -1.91
ATG4BQ9Y4P1 AC013244.3-201ENST00000605614 388 ntBASIC3.12□□□□□ -1.91
ATG4BQ9Y4P1 MIR6130-201ENST00000619419 109 ntBASIC3.12□□□□□ -1.91
ATG4BQ9Y4P1 SNORD39.4-201ENST00000620099 78 ntBASIC3.12□□□□□ -1.91
ATG4BQ9Y4P1 AC104971.4-201ENST00000622763 249 ntTSL 5 BASIC3.12□□□□□ -1.91
ATG4BQ9Y4P1 AC079228.1-201ENST00000624774 1049 ntBASIC3.12□□□□□ -1.91
ATG4BQ9Y4P1 AC012593.1-211ENST00000625996 799 ntTSL 5 BASIC3.12□□□□□ -1.91
ATG4BQ9Y4P1 LINC02246-205ENST00000627623 417 ntTSL 5 BASIC3.12□□□□□ -1.91
ATG4BQ9Y4P1 MGAT4C-202ENST00000548651 2159 ntAPPRIS P1 TSL 5 BASIC3.12□□□□□ -1.91
ATG4BQ9Y4P1 AC005183.1-201ENST00000603687 1979 ntBASIC3.12□□□□□ -1.91
ATG4BQ9Y4P1 RASA1-202ENST00000456692 3776 ntAPPRIS ALT2 TSL 1 (best) BASIC3.12□□□□□ -1.91
ATG4BQ9Y4P1 KNTC1-205ENST00000450485 3655 ntTSL 2 BASIC3.12□□□□□ -1.91
ATG4BQ9Y4P1 AC100800.1-201ENST00000524252 2054 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
ATG4BQ9Y4P1 SLC35A1-201ENST00000369552 1851 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
ATG4BQ9Y4P1 PRB2-201ENST00000389362 1429 ntAPPRIS P2 TSL 5 BASIC3.11□□□□□ -1.91
ATG4BQ9Y4P1 ADAM5-201ENST00000359790 1663 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
ATG4BQ9Y4P1 LINC01376-202ENST00000424895 1949 ntTSL 2 BASIC3.11□□□□□ -1.91
ATG4BQ9Y4P1 Z83843.1-201ENST00000604070 3685 ntBASIC3.11□□□□□ -1.91
ATG4BQ9Y4P1 AP000568.1-201ENST00000282964 442 ntBASIC3.11□□□□□ -1.91
ATG4BQ9Y4P1 DEFB108F-201ENST00000344638 222 ntBASIC3.11□□□□□ -1.91
ATG4BQ9Y4P1 MIR135A2-201ENST00000384854 100 ntBASIC3.11□□□□□ -1.91
ATG4BQ9Y4P1 SNORA11.1-201ENST00000408133 129 ntBASIC3.11□□□□□ -1.91
ATG4BQ9Y4P1 RNU2-43P-201ENST00000410306 190 ntBASIC3.11□□□□□ -1.91
ATG4BQ9Y4P1 RNA5SP31-201ENST00000411144 127 ntBASIC3.11□□□□□ -1.91
ATG4BQ9Y4P1 AL024509.3-201ENST00000413898 745 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
ATG4BQ9Y4P1 MTCYBP38-201ENST00000417160 1123 ntBASIC3.11□□□□□ -1.91
ATG4BQ9Y4P1 AC005326.1-201ENST00000429197 123 ntBASIC3.11□□□□□ -1.91
ATG4BQ9Y4P1 ZYG11AP1-201ENST00000430329 837 ntBASIC3.11□□□□□ -1.91
ATG4BQ9Y4P1 MTND1P32-201ENST00000433043 938 ntBASIC3.11□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 95.3 ms