Protein–RNA interactions for Protein: Q9Y3X0

CCDC9, Coiled-coil domain-containing protein 9, humanhuman

Known RBP Predictions only

Length 531 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC9Q9Y3X0 AL359634.1-202ENST00000404721 284 ntBASIC5.85□□□□□ -1.47
CCDC9Q9Y3X0 GSTA9P-201ENST00000406231 611 ntBASIC5.85□□□□□ -1.47
CCDC9Q9Y3X0 RNA5SP36-201ENST00000410197 133 ntBASIC5.85□□□□□ -1.47
CCDC9Q9Y3X0 AC084149.1-201ENST00000437233 284 ntTSL 5 BASIC5.85□□□□□ -1.47
CCDC9Q9Y3X0 AL138830.2-202ENST00000446358 786 ntTSL 2 BASIC5.85□□□□□ -1.47
CCDC9Q9Y3X0 AC104651.2-201ENST00000447549 528 ntBASIC5.85□□□□□ -1.47
CCDC9Q9Y3X0 FABP3P2-201ENST00000453169 399 ntBASIC5.85□□□□□ -1.47
CCDC9Q9Y3X0 AC005538.1-201ENST00000455991 594 ntTSL 3 BASIC5.85□□□□□ -1.47
CCDC9Q9Y3X0 AC106872.2-201ENST00000494303 480 ntBASIC5.85□□□□□ -1.47
CCDC9Q9Y3X0 AC091133.4-201ENST00000511142 308 ntBASIC5.85□□□□□ -1.47
CCDC9Q9Y3X0 AC008415.1-201ENST00000522189 734 ntTSL 5 BASIC5.85□□□□□ -1.47
CCDC9Q9Y3X0 AP001804.3-201ENST00000525146 880 ntBASIC5.85□□□□□ -1.47
CCDC9Q9Y3X0 AP000442.2-202ENST00000531311 601 ntTSL 3 BASIC5.85□□□□□ -1.47
CCDC9Q9Y3X0 AC006960.3-201ENST00000561845 705 ntBASIC5.85□□□□□ -1.47
CCDC9Q9Y3X0 AP001029.3-201ENST00000588063 596 ntBASIC5.85□□□□□ -1.47
CCDC9Q9Y3X0 LINC01905-202ENST00000588139 459 ntTSL 3 BASIC5.85□□□□□ -1.47
CCDC9Q9Y3X0 AC079587.1-201ENST00000603846 277 ntBASIC5.85□□□□□ -1.47
CCDC9Q9Y3X0 AL445584.2-201ENST00000614030 616 ntTSL 5 BASIC5.85□□□□□ -1.47
CCDC9Q9Y3X0 AL589740.1-204ENST00000634677 630 ntTSL 4 BASIC5.85□□□□□ -1.47
CCDC9Q9Y3X0 AC099654.12-201ENST00000639868 649 ntBASIC5.85□□□□□ -1.47
CCDC9Q9Y3X0 PCDH11X-207ENST00000406881 4156 ntAPPRIS ALT2 TSL 1 (best) BASIC5.85□□□□□ -1.47
CCDC9Q9Y3X0 AC100778.3-201ENST00000580060 1750 ntBASIC5.85□□□□□ -1.47
CCDC9Q9Y3X0 COPG2-201ENST00000330992 3073 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
CCDC9Q9Y3X0 SLC25A46-206ENST00000509432 1596 ntTSL 2 BASIC5.84□□□□□ -1.47
CCDC9Q9Y3X0 TRIQK-214ENST00000521988 3672 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
CCDC9Q9Y3X0 GABPAP-201ENST00000419271 1356 ntBASIC5.84□□□□□ -1.47
CCDC9Q9Y3X0 HSPE1P11-201ENST00000339579 310 ntBASIC5.84□□□□□ -1.47
CCDC9Q9Y3X0 RNA5SP502-201ENST00000362694 119 ntBASIC5.84□□□□□ -1.47
CCDC9Q9Y3X0 RN7SKP226-201ENST00000364912 300 ntBASIC5.84□□□□□ -1.47
CCDC9Q9Y3X0 RNU6-1215P-201ENST00000384441 102 ntBASIC5.84□□□□□ -1.47
CCDC9Q9Y3X0 Y_RNA.505-201ENST00000384489 102 ntBASIC5.84□□□□□ -1.47
CCDC9Q9Y3X0 TANK-204ENST00000403609 555 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
CCDC9Q9Y3X0 AC092941.1-201ENST00000415940 427 ntTSL 5 BASIC5.84□□□□□ -1.47
CCDC9Q9Y3X0 MTCO1P21-201ENST00000416634 589 ntBASIC5.84□□□□□ -1.47
CCDC9Q9Y3X0 AC004938.1-201ENST00000438468 308 ntBASIC5.84□□□□□ -1.47
CCDC9Q9Y3X0 MACC1-AS1-201ENST00000439285 639 ntTSL 3 BASIC5.84□□□□□ -1.47
CCDC9Q9Y3X0 CYCSP24-201ENST00000445119 316 ntBASIC5.84□□□□□ -1.47
CCDC9Q9Y3X0 AC006480.1-201ENST00000449887 378 ntBASIC5.84□□□□□ -1.47
CCDC9Q9Y3X0 AC004924.1-201ENST00000480160 781 ntBASIC5.84□□□□□ -1.47
CCDC9Q9Y3X0 AC078889.1-201ENST00000536412 523 ntTSL 2 BASIC5.84□□□□□ -1.47
CCDC9Q9Y3X0 AL352979.3-201ENST00000553515 247 ntBASIC5.84□□□□□ -1.47
CCDC9Q9Y3X0 AC024267.4-202ENST00000582631 436 ntTSL 2 BASIC5.84□□□□□ -1.47
CCDC9Q9Y3X0 AC013476.2-201ENST00000614456 459 ntBASIC5.84□□□□□ -1.47
CCDC9Q9Y3X0 MALAT1-210ENST00000617489 318 ntTSL 2 BASIC5.84□□□□□ -1.47
CCDC9Q9Y3X0 SATB1-AS1-269ENST00000630766 591 ntTSL 5 BASIC5.84□□□□□ -1.47
CCDC9Q9Y3X0 AP003481.1-201ENST00000637808 351 ntTSL 5 BASIC5.84□□□□□ -1.47
CCDC9Q9Y3X0 UGT2B4-207ENST00000639621 1154 ntTSL 5 BASIC5.84□□□□□ -1.47
CCDC9Q9Y3X0 FAM71D-211ENST00000612183 1790 ntAPPRIS P1 TSL 2 BASIC5.84□□□□□ -1.47
CCDC9Q9Y3X0 TCHHL1-201ENST00000368806 3603 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
CCDC9Q9Y3X0 AC105074.1-201ENST00000623380 3095 ntBASIC5.84□□□□□ -1.47
CCDC9Q9Y3X0 LINC00622-201ENST00000562811 1570 ntBASIC5.84□□□□□ -1.48
CCDC9Q9Y3X0 SEMA3D-201ENST00000284136 6265 ntAPPRIS P1 TSL 5 BASIC5.84□□□□□ -1.48
CCDC9Q9Y3X0 RIMS1-204ENST00000401910 3542 ntTSL 2 BASIC5.83□□□□□ -1.48
CCDC9Q9Y3X0 DNAH6-202ENST00000389394 12795 ntAPPRIS P1 TSL 5 BASIC5.83□□□□□ -1.48
CCDC9Q9Y3X0 OR56A3-205ENST00000641905 4595 ntAPPRIS P1 BASIC5.83□□□□□ -1.48
CCDC9Q9Y3X0 OR5J1P-201ENST00000313544 939 ntBASIC5.83□□□□□ -1.48
CCDC9Q9Y3X0 RNA5SP124-201ENST00000362739 110 ntBASIC5.83□□□□□ -1.48
CCDC9Q9Y3X0 AL590609.3-201ENST00000411815 210 ntTSL 3 BASIC5.83□□□□□ -1.48
CCDC9Q9Y3X0 AC010745.2-201ENST00000420404 839 ntTSL 3 BASIC5.83□□□□□ -1.48
CCDC9Q9Y3X0 AC005019.2-201ENST00000434321 359 ntTSL 5 BASIC5.83□□□□□ -1.48
CCDC9Q9Y3X0 LINC01208-202ENST00000434969 827 ntTSL 2 BASIC5.83□□□□□ -1.48
CCDC9Q9Y3X0 TXNP1-201ENST00000441872 371 ntBASIC5.83□□□□□ -1.48
CCDC9Q9Y3X0 MTND1P1-201ENST00000445453 368 ntBASIC5.83□□□□□ -1.48
CCDC9Q9Y3X0 AC105398.1-201ENST00000446073 402 ntTSL 5 BASIC5.83□□□□□ -1.48
CCDC9Q9Y3X0 RPL9P32-201ENST00000464118 620 ntBASIC5.83□□□□□ -1.48
CCDC9Q9Y3X0 AC022795.1-201ENST00000473808 480 ntBASIC5.83□□□□□ -1.48
CCDC9Q9Y3X0 THAP6-203ENST00000502620 582 ntTSL 3 BASIC5.83□□□□□ -1.48
CCDC9Q9Y3X0 AC004053.1-201ENST00000515127 575 ntTSL 5 BASIC5.83□□□□□ -1.48
CCDC9Q9Y3X0 SNORA74D-201ENST00000516404 141 ntBASIC5.83□□□□□ -1.48
CCDC9Q9Y3X0 IFITM8P-201ENST00000522529 394 ntBASIC5.83□□□□□ -1.48
CCDC9Q9Y3X0 ARL2BPP2-201ENST00000550907 489 ntBASIC5.83□□□□□ -1.48
CCDC9Q9Y3X0 LINC02277-201ENST00000553386 453 ntTSL 2 BASIC5.83□□□□□ -1.48
CCDC9Q9Y3X0 RN7SL435P-201ENST00000584418 282 ntBASIC5.83□□□□□ -1.48
CCDC9Q9Y3X0 AC022150.3-201ENST00000599143 880 ntTSL 5 BASIC5.83□□□□□ -1.48
CCDC9Q9Y3X0 AL022154.1-201ENST00000604698 785 ntBASIC5.83□□□□□ -1.48
CCDC9Q9Y3X0 AC106900.2-201ENST00000604994 317 ntBASIC5.83□□□□□ -1.48
CCDC9Q9Y3X0 AC004696.1-201ENST00000614345 607 ntBASIC5.83□□□□□ -1.48
CCDC9Q9Y3X0 PLCB4-204ENST00000378501 5833 ntAPPRIS P4 TSL 5 BASIC5.83□□□□□ -1.48
CCDC9Q9Y3X0 NCOA1-201ENST00000288599 6952 ntAPPRIS ALT2 TSL 1 (best) BASIC5.83□□□□□ -1.48
CCDC9Q9Y3X0 MAPK10-206ENST00000395161 4186 ntTSL 5 BASIC5.83□□□□□ -1.48
CCDC9Q9Y3X0 LINC00158-201ENST00000332587 1476 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
CCDC9Q9Y3X0 AC104662.3-202ENST00000507794 4055 ntTSL 2 BASIC5.83□□□□□ -1.48
CCDC9Q9Y3X0 LINC00862-201ENST00000367355 1417 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
CCDC9Q9Y3X0 ABI3BP-201ENST00000284322 4498 ntAPPRIS P2 TSL 1 (best) BASIC5.82□□□□□ -1.48
CCDC9Q9Y3X0 OR6C2-203ENST00000641516 1682 ntAPPRIS P1 BASIC5.82□□□□□ -1.48
CCDC9Q9Y3X0 AC005550.3-201ENST00000451240 3743 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
CCDC9Q9Y3X0 LAP3P1-201ENST00000403648 294 ntBASIC5.82□□□□□ -1.48
CCDC9Q9Y3X0 RNU2-36P-201ENST00000410361 191 ntBASIC5.82□□□□□ -1.48
CCDC9Q9Y3X0 AC005062.1-206ENST00000424516 710 ntTSL 3 BASIC5.82□□□□□ -1.48
CCDC9Q9Y3X0 AL356867.1-201ENST00000429623 299 ntBASIC5.82□□□□□ -1.48
CCDC9Q9Y3X0 TNKS2-AS1-201ENST00000432246 609 ntTSL 2 BASIC5.82□□□□□ -1.48
CCDC9Q9Y3X0 AC025428.1-201ENST00000444137 403 ntTSL 3 BASIC5.82□□□□□ -1.48
CCDC9Q9Y3X0 SNRPGP6-201ENST00000451124 220 ntBASIC5.82□□□□□ -1.48
CCDC9Q9Y3X0 PLS1-AS1-201ENST00000485338 346 ntTSL 3 BASIC5.82□□□□□ -1.48
CCDC9Q9Y3X0 AC108078.1-201ENST00000508073 725 ntBASIC5.82□□□□□ -1.48
CCDC9Q9Y3X0 AC110768.1-201ENST00000509222 400 ntBASIC5.82□□□□□ -1.48
CCDC9Q9Y3X0 SNORA70.24-201ENST00000517233 118 ntBASIC5.82□□□□□ -1.48
CCDC9Q9Y3X0 AC113145.1-201ENST00000522408 412 ntTSL 5 BASIC5.82□□□□□ -1.48
CCDC9Q9Y3X0 AC100763.1-201ENST00000532735 522 ntTSL 3 BASIC5.82□□□□□ -1.48
CCDC9Q9Y3X0 HOMER1-205ENST00000535690 642 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 106.2 ms